#! /usr/bin/env python # ========================================================================== # This script displays pull histograms that have been generated using the # cspull script. The pull is defined by # # (fitted value - simulated value) / estimated error # # and the pull histogram allows to assess possible biases in the fit # parameters and errors. # # Required 3rd party modules: # - matplotlib # - numpy # # Copyright (C) 2011 Jurgen Knodlseder # # This program is free software: you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by # the Free Software Foundation, either version 3 of the License, or # (at your option) any later version. # # This program is distributed in the hope that it will be useful, # but WITHOUT ANY WARRANTY; without even the implied warranty of # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the # GNU General Public License for more details. # # You should have received a copy of the GNU General Public License # along with this program. If not, see . # # ========================================================================== import matplotlib.mlab as mlab import matplotlib.pyplot as plt import numpy as np import sys import csv # ====================== # # Read pull distribution # # ====================== # def read_pull(filename, parname): """ Read pull distribution. """ # Initialise list values = [] # Open reader reader = csv.reader(open(filename, 'r'), delimiter=',') # Read rows first = True index = -1 for row in reader: # Get column index if first row if first: try: index = row.index(parname) except: sys.stdout.write('ERROR: Parameter "'+parname+'" not found in list:\n') for p in row: sys.stdout.write(' "'+p+'"\n') raise NameError(parname) # Handle data rows else: values.append(float(row[index])) # Flag that first row has been passed first = False # Create numpy array a = np.array(values) # Return array return a # ======================== # # Main routine entry point # # ======================== # if __name__ == '__main__': """ Display pull histogram generated by cspull using matplotlib. """ # Print usage information usage = "Usage: show_pull_histogram filename parname [bins]" if len(sys.argv) < 3: sys.stdout.write(usage+"\n") sys.exit() # Extract parameters filename = sys.argv[1] parname = sys.argv[2] if len(sys.argv) > 3: nbins = int(sys.argv[3]) else: nbins = 50 # Read values from CSV file values = read_pull(filename, parname) # Create histogram n, bins, patches = plt.hist(values, nbins, range=[-4.0,4.0], normed=True, facecolor='green') # Create expected distribution y = mlab.normpdf(bins, 0.0, 1.0) l = plt.plot(bins, y, 'r-', linewidth=2) # Set parname for plotting name = parname # Set plot plt.xlabel('Pull ('+name+')') plt.ylabel('Arbitrary units') plt.title(name) plt.grid(True) # Show histogram plt.show()