/***************************************************************************
* GCaldb.cpp - Calibration database class *
* ----------------------------------------------------------------------- *
* copyright (C) 2011-2016 by Juergen Knoedlseder *
* ----------------------------------------------------------------------- *
* *
* This program is free software: you can redistribute it and/or modify *
* it under the terms of the GNU General Public License as published by *
* the Free Software Foundation, either version 3 of the License, or *
* (at your option) any later version. *
* *
* This program is distributed in the hope that it will be useful, *
* but WITHOUT ANY WARRANTY; without even the implied warranty of *
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the *
* GNU General Public License for more details. *
* *
* You should have received a copy of the GNU General Public License *
* along with this program. If not, see . *
* *
***************************************************************************/
/**
* @file GCaldb.cpp
* @brief Calibration database class implementation
* @author Juergen Knoedlseder
*/
/* __ Includes ___________________________________________________________ */
#ifdef HAVE_CONFIG_H
#include
#endif
#include // access() function
#include // std::getenv() function
#include "GException.hpp"
#include "GTools.hpp"
#include "GCaldb.hpp"
/* __ Method name definitions ____________________________________________ */
#define G_GET_ROOTDIR "GCaldb::rootdir()"
#define G_SET_ROOTDIR "GCaldb::rootdir(std::string&)"
#define G_PATH "GCaldb::path(std::string&, std::string&)"
#define G_CIFNAME "GCaldb::cifname(std::string&, std::string&)"
/* __ Macros _____________________________________________________________ */
/* __ Coding definitions _________________________________________________ */
/* __ Debug definitions __________________________________________________ */
/*==========================================================================
= =
= Constructors/destructors =
= =
==========================================================================*/
/***********************************************************************//**
* @brief Void constructor
*
* Creates void instance of a calibration database.
***************************************************************************/
GCaldb::GCaldb(void)
{
// Initialise class members
init_members();
// Return
return;
}
/***********************************************************************//**
* @brief Copy constructor
*
* @param[in] caldb Calibration database.
***************************************************************************/
GCaldb::GCaldb(const GCaldb& caldb)
{
// Initialise class members for clean destruction
init_members();
// Copy members
copy_members(caldb);
// Return
return;
}
/***********************************************************************//**
* @brief Initalisation constructor
*
* @param[in] pathname Calibration database root directory.
*
* This constructor sets the calibration database using the specified root
* directory. Unless the specified pathname is not empty, any existing CALDB
* environment variables will be ignored.
***************************************************************************/
GCaldb::GCaldb(const std::string& pathname)
{
// Initialise members
init_members();
// If pathname is not empty then use it as root pathname
if (pathname.length() > 0) {
rootdir(gammalib::expand_env(pathname));
}
// Return
return;
}
/***********************************************************************//**
* @brief Calibration database constructor
*
* @param[in] mission Mission name (case insensitive).
* @param[in] instrument Instrument name (case insensitive).
*
* Constructs a calibration database instance by opening the calibration
* database for the specified @p mission and @p instrument. Opening consists
* of loading the Calibration Index File (CIF) in memory. Once opened,
* calibration information can be accessed.
*
* For more information about opening the database, refer to GCaldb::open.
***************************************************************************/
GCaldb::GCaldb(const std::string& mission, const std::string& instrument)
{
// Initialise members
init_members();
// Open database
open(mission, instrument);
// Return
return;
}
/***********************************************************************//**
* @brief Destructor
***************************************************************************/
GCaldb::~GCaldb(void)
{
// Free members
free_members();
// Return
return;
}
/*==========================================================================
= =
= Operators =
= =
==========================================================================*/
/***********************************************************************//**
* @brief Assignment operator
*
* @param[in] caldb Calibration database.
***************************************************************************/
GCaldb& GCaldb::operator= (const GCaldb& caldb)
{
// Execute only if object is not identical
if (this != &caldb) {
// Free members
free_members();
// Initialise private members
init_members();
// Copy members
copy_members(caldb);
} // endif: object was not identical
// Return this object
return *this;
}
/*==========================================================================
= =
= Public methods =
= =
==========================================================================*/
/***********************************************************************//**
* @brief Clear calibration database
***************************************************************************/
void GCaldb::clear(void)
{
// Free members
free_members();
// Initialise private members
init_members();
// Return
return;
}
/***********************************************************************//**
* @brief Clone calibration database
*
* Cloning provides a copy of the calibration database.
***************************************************************************/
GCaldb* GCaldb::clone(void) const
{
// Clone this object
return (new GCaldb(*this));
}
/***********************************************************************//**
* @brief Returns number of entries in calibration database
*
* This method returns the number of entries that were found in an opened
* calibration database. An entry corresponds to one line in the Calibration
* Index File (CIF). If the index file is empty, or if no calibration
* database has been opened, the method returns 0.
***************************************************************************/
int GCaldb::size(void) const
{
// Initialise size
int size = 0;
// If CIF is open then determine number of entries
if (m_cif != NULL) {
size = m_cif->nrows();
}
// Return size
return size;
}
/***********************************************************************//**
* @brief Return path to CALDB root directory
*
* @exception GException::directory_not_found
* Calibration directory not found.
* @exception GException::directory_not_accessible
* No read permission granted to calibration directory.
*
* The calibration directory path is given by one of the following
*
* $CALDB/data/
* $CALDB/data//
*
* where \ is the name of the mission and \ is the
* optional instrument name (all lower case). The arguments provided to the
* method are transformed to lower case.
***************************************************************************/
std::string GCaldb::rootdir(void) const
{
// Initialise root directory to optional root directory name
std::string rootdir = m_opt_rootdir;
// If root directory is empty then get the directory name from the
// CALDB environment variable. Throw an exception if the environment
// variable has not been set
if (rootdir.empty()) {
// Get root directory from CALDB environment variables
char* ptr1 = std::getenv("CALDB");
// Throw an exception if non of the environment variables was set
if (ptr1 == NULL) {
throw GException::env_not_found(G_GET_ROOTDIR,
"CALDB",
"Please set the CALDB environment"
" variable to a valid calibration database root directory.");
}
// If CALDB was set then check whether the directory exists
if (ptr1 != NULL) {
if (access(ptr1, F_OK) == 0) {
rootdir = std::string(ptr1);
}
}
} // endif: no optional root directory has been set
// Return root directory
return rootdir;
}
/***********************************************************************//**
* @brief Set calibration database root directory
*
* @param[in] pathname Calibration database root directory.
*
* @exception GException::directory_not_found
* Calibration database root directory not found.
* @exception GException::directory_not_accessible
* No read permission granted for calibration database root
* directory.
*
* Sets the calibration database root directory to a specific path. The
* method verifies the existence of the root directory prior to setting.
***************************************************************************/
void GCaldb::rootdir(const std::string& pathname)
{
// Expand pathname
std::string rootdir = gammalib::expand_env(pathname);
// Verify that specified root directory exists
if (!gammalib::dir_exists(rootdir)) {
throw GException::directory_not_found(G_SET_ROOTDIR, rootdir);
}
// Verify that specified root directory allows read access
if (access(rootdir.c_str(), R_OK) != 0) {
throw GException::directory_not_accessible(G_SET_ROOTDIR, rootdir,
"Requested read permission not granted.");
}
// Set calibration database root directory
m_opt_rootdir = rootdir;
// Return
return;
}
/***********************************************************************//**
* @brief Return path to calibration directory
*
* @param[in] mission Mission name (case insensitive).
* @param[in] instrument Instrument name (case insensitive; optional).
*
* @exception GException::directory_not_found
* Calibration directory not found.
* @exception GException::directory_not_accessible
* No read permission granted to calibration directory.
*
* The calibration directory path is given by one of the following
*
* $CALDB/data/
* $CALDB/data//
*
* where \ is the name of the mission and \ is the
* optional instrument name (all lower case). The arguments provided to the
* method are transformed to lower case.
***************************************************************************/
std::string GCaldb::path(const std::string& mission, const std::string& instrument)
{
// Verify that mission name is valid and directory is accessible
std::string path = rootdir() + "/data/" + gammalib::tolower(mission);
if (!gammalib::dir_exists(path)) {
throw GException::directory_not_found(G_PATH, path,
"Requested mission \""+gammalib::toupper(mission)+"\" not found in"
" calibration database.");
}
if (access(path.c_str(), R_OK) != 0) {
throw GException::directory_not_accessible(G_PATH, path,
"Requested read permission not granted for mission \""+
gammalib::toupper(mission)+"\".");
}
// If an instrument has been specified, verify that instrument name is
// valid and directory is accessible
if (instrument.length() > 0) {
// Add instrument to path
path += "/" + gammalib::tolower(instrument);
// Verify path
if (!gammalib::dir_exists(path)) {
throw GException::directory_not_found(G_PATH, path,
"Requested instrument \""+gammalib::toupper(instrument)+"\" on"
" mission \""+gammalib::toupper(mission)+"\" not found in"
" calibration database.");
}
if (access(path.c_str(), R_OK) != 0) {
throw GException::directory_not_accessible(G_PATH, path,
"Requested read permission not granted for instrument \""+
gammalib::toupper(instrument)+"\" on mission \""+gammalib::toupper(mission)+
"\".");
}
} // endif: instrument has been specified
// Return path
return path;
}
/***********************************************************************//**
* @brief Return absolute CIF filename
*
* @param[in] mission Mission name (case insensitive).
* @param[in] instrument Instrument name (case insensitive; optional).
*
* @exception GException::file_error
* Calibration Index File not found.
*
* The calibration directory path is given by one of the following
*
* $CALDB/data//caldb.indx
* $CALDB/data///caldb.indx
*
* where \ is the name of the mission and \ is the
* optional instrument name (all lower case). The arguments provided to the
* method are transformed to lower case.
***************************************************************************/
std::string GCaldb::cifname(const std::string& mission, const std::string& instrument)
{
// Set calibration index filename
std::string cif = path(mission, instrument) + "/caldb.indx";
// Check if file exists
GFilename filename(cif);
if (!filename.exists()) {
std::string msg = "Calibration Index File (CIF) \""+
cif+"\" not found.";
throw GException::file_error(G_CIFNAME, msg);
}
// Return cif
return cif;
}
/***********************************************************************//**
* @brief Open calibration database
*
* @param[in] mission Mission name (case insensitive).
* @param[in] instrument Instrument name (case insensitive; optional).
*
* Opens the calibration database for a given mission and instrument. Opening
* consists of loading the Calibration Index File (CIF) in memory. Once
* opened, calibration information can be accessed.
***************************************************************************/
void GCaldb::open(const std::string& mission, const std::string& instrument)
{
// Close any open database
close();
// Set full CIF filename (this also validates the mission and
// instrument names)
m_cifname = cifname(mission, instrument);
// Store mission and instrument
m_mission = mission;
m_instrument = instrument;
// Open CIF FITS file
m_fits.open(m_cifname);
// Store pointer to first extension which holds the CIF table
m_cif = m_fits.table(1);
// Return
return;
}
/***********************************************************************//**
* @brief Close calibration database
*
* Close any previously opened calibration database.
***************************************************************************/
void GCaldb::close(void)
{
// Reset database parameters
m_mission.clear();
m_instrument.clear();
m_cifname.clear();
// Close CIF FITS file
m_fits.close();
// Reset CIF table pointer
m_cif = NULL;
// Return
return;
}
/***********************************************************************//**
* @brief Return calibration file name based on selection parameters
*
* @param[in] detector Detector name (not used if empty).
* @param[in] filter Filter name (not used if empty).
* @param[in] codename Code name (not used if empty).
* @param[in] date Date in yyyy-mm-dd format (not used if empty).
* @param[in] time Time in hh:mm:ss format (not used if empty).
* @param[in] expr Boolean selection expression (not used if empty).
* @return Calibration filename (empty if not found).
*
* Returns a calibration file name based on selection parameters. If more
* files satisfy the specified selection parameters, the first file will
* be returned.
*
* @todo data should support "now" and probably be implemented using < condition.
* @todo time should support "now" and probably be implemented using < condition.
* @todo expr should support arbitrary Boolean expressions.
***************************************************************************/
GFilename GCaldb::filename(const std::string& detector,
const std::string& filter,
const std::string& codename,
const std::string& date,
const std::string& time,
const std::string& expr)
{
// Initialise empty filename
GFilename filename;
// Continue only if CIF is opened
if (m_cif != NULL) {
// Loop over all CIF entries
for (int i = 0; i < size(); ++i) {
// Initialise selection flags
bool match_detector = false;
bool match_filter = false;
bool match_codename = false;
bool match_date = false;
bool match_time = false;
bool match_expr = false;
// Check for detector
if (detector.length() > 0) {
const GFitsTableCol* column = (*m_cif)["DETNAM"];
if (gammalib::toupper(detector) ==
gammalib::toupper(column->string(i))) {
match_detector = true;
}
}
else {
match_detector = true;
}
// Check for filter
if (filter.length() > 0) {
const GFitsTableCol* column = (*m_cif)["FILTER"];
if (gammalib::toupper(filter) ==
gammalib::toupper(column->string(i))) {
match_filter = true;
}
}
else {
match_filter = true;
}
// Check for code name
if (codename.length() > 0) {
const GFitsTableCol* column = (*m_cif)["CAL_CNAM"];
if (gammalib::toupper(codename) ==
gammalib::toupper(column->string(i))) {
match_codename = true;
}
}
else {
match_codename = true;
}
// Check for date
if (date.length() > 0) {
const GFitsTableCol* column = (*m_cif)["CAL_VSD"];
if (gammalib::toupper(date) ==
gammalib::toupper(column->string(i))) {
match_date = true;
}
}
else {
match_date = true;
}
// Check for time
if (time.length() > 0) {
const GFitsTableCol* column = (*m_cif)["CAL_VST"];
if (gammalib::toupper(time) ==
gammalib::toupper(column->string(i))) {
match_time = true;
}
}
else {
match_time = true;
}
// Check for expression
if (expr.length() > 0) {
const GFitsTableCol* column = (*m_cif)["CAL_CBD"];
int num_columns = column->elements(i);
for (int k = 0; k < num_columns; ++k) {
if (gammalib::toupper(expr) ==
gammalib::toupper(column->string(i,k))) {
match_expr = true;
break;
}
}
}
else {
match_expr = true;
}
// Select file if all selection match
if (match_detector && match_filter && match_codename &&
match_date && match_time && match_expr) {
const GFitsTableCol* cal_dir = (*m_cif)["CAL_DIR"];
const GFitsTableCol* cal_file = (*m_cif)["CAL_FILE"];
std::string path = rootdir();
if (path.empty()) {
filename = cal_dir->string(i) + "/" +
cal_file->string(i);
}
else {
filename = path + "/" +
cal_dir->string(i) + "/" +
cal_file->string(i);
}
break;
}
} // endfor: looped over all CIF entries
} // endif: CIF has been opened
// Return filename
return filename;
}
/***********************************************************************//**
* @brief Print calibration database information
*
* @param[in] chatter Chattiness (defaults to NORMAL).
* @return String containing calibration database information.
***************************************************************************/
std::string GCaldb::print(const GChatter& chatter) const
{
// Initialise result string
std::string result;
// Continue only if chatter is not silent
if (chatter != SILENT) {
// Append Header
result.append("=== GCaldb ===");
// Append information
result.append("\n"+gammalib::parformat("Database root"));
try {
result.append(rootdir());
}
catch (std::exception& e) {
result.append("undefined");
}
// Append information about opened database
if (m_cif != NULL) {
result.append("\n"+gammalib::parformat("Selected Mission"));
result.append(gammalib::toupper(m_mission));
result.append("\n"+gammalib::parformat("Selected Instrument"));
result.append(gammalib::toupper(m_instrument));
result.append("\n"+gammalib::parformat("Calibration Index File"));
result.append(m_cifname);
result.append("\n"+gammalib::parformat("Number of entries"));
result.append(gammalib::str(size()));
}
} // endif: chatter was not silent
// Return
return result;
}
/*==========================================================================
= =
= Private methods =
= =
==========================================================================*/
/***********************************************************************//**
* @brief Initialise class members
***************************************************************************/
void GCaldb::init_members(void)
{
// Initialise members
m_opt_rootdir.clear();
m_mission.clear();
m_instrument.clear();
m_cifname.clear();
m_fits.clear();
m_cif = NULL;
// Return
return;
}
/***********************************************************************//**
* @brief Copy class members
*
* @param[in] caldb Calibration database.
***************************************************************************/
void GCaldb::copy_members(const GCaldb& caldb)
{
// Copy attributes
m_opt_rootdir = caldb.m_opt_rootdir;
m_mission = caldb.m_mission;
m_instrument = caldb.m_instrument;
m_cifname = caldb.m_cifname;
m_fits = caldb.m_fits;
// Set CIF table pointer. We do not copy over the pointer as the FITS
// file has been copied here.
if (caldb.m_cif != NULL) {
m_cif = m_fits.table(1);
}
else {
m_cif = NULL;
}
// Return
return;
}
/***********************************************************************//**
* @brief Delete class members
***************************************************************************/
void GCaldb::free_members(void)
{
// Close any open database
close();
// Return
return;
}