diff --git a/Makefile.am b/Makefile.am
index 090e617..2199c6a 100644
--- a/Makefile.am
+++ b/Makefile.am
@@ -4,7 +4,7 @@
 ACLOCAL_AMFLAGS = -I m4
 
 # Subdirectories
-SUBDIRS = . src pyext test
+SUBDIRS = . src pyext test examples scripts
 
 #
 INCLUDES =
diff --git a/configure.ac b/configure.ac
index b44a1d4..ac506f7 100644
--- a/configure.ac
+++ b/configure.ac
@@ -331,6 +331,8 @@ AC_CONFIG_FILES([Makefile
                  test/Makefile
                  pyext/Makefile
                  pyext/setup.py
+                 examples/Makefile
+                 scripts/Makefile
                  ctatools.pc])
 AC_OUTPUT