#! /usr/bin/env python
# ==========================================================================
# This script generates CALDB compliant performance tables from MC ROOT
# files.
#
# Note that the effective area given in the ASCII file is the full effective
# area (i.e. the area before applying any theta cut). This is required by
# GammaLib as the maximum likelihood analysis does not imply any theta cut.
#
# Copyright (C) 2014 Juergen Knoedlseder
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
#
# This program is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# GNU General Public License for more details.
#
# You should have received a copy of the GNU General Public License
# along with this program. If not, see .
#
# ==========================================================================
from ROOT import TFile, TH1F, TH2F
from datetime import datetime
import gammalib
import math
import sys
import glob
import os
# =========== #
# CalDB class #
# =========== #
class caldb():
"""
"""
def __init__(self, inst, path=""):
"""
CALDB constructor. The constructor will create one CALDB entry for
an observation.
Parameters:
inst - Instrument string.
Keywords:
path - CALDB Root path.
"""
# Store root path
self.path = path
# Initialise some members
self.cif = None
self.irf = None
self.ea = None
self.psf = None
self.edisp = None
self.bgd = None
self.hdu_cif = None
# Store UTC date of job execution
self.utc = datetime.utcnow().isoformat()[:19]
# Set CALDB information
self.cal_tel = "CTA"
self.cal_inst = inst.upper()
self.cal_det = "NONE"
self.cal_flt = "NONE"
self.cal_class = "BCF"
self.cal_type = "DATA"
self.cal_qual = 0 # 0=good, 1=bad, 2=dubious, ...
self.cal_date = "14/01/01"
self.val_date = "2014-01-01"
self.val_time = "00:00:00"
self.ref_time = 51544.0
self.cal_name = "NAME()"
self.cal_version = "VERSION(Prod1)"
self.cal_cut = "CLASS(BEST)"
self.cal_analysis = "ANALYSIS(MPIK)"
#
self.ea_name = "EFF_AREA"
self.ea_doc = "???"
self.ea_bounds = [self.cal_name, self.cal_version, self.cal_cut, self.cal_analysis]
self.ea_desc = "CTA effective area"
#
self.psf_name = "RPSF"
self.psf_doc = "???"
self.psf_bounds = [self.cal_name, self.cal_version, self.cal_cut, self.cal_analysis]
self.psf_desc = "CTA point spread function"
#
self.edisp_name = "EDISP"
self.edisp_doc = "???"
self.edisp_bounds = [self.cal_name, self.cal_version, self.cal_cut, self.cal_analysis]
self.edisp_desc = "CTA energy dispersion"
#
self.bgd_name = "BGD"
self.bgd_doc = "???"
self.bgd_bounds = [self.cal_name, self.cal_version, self.cal_cut, self.cal_analysis]
self.bgd_desc = "CTA background"
# Create directory structure
self.make_dirs()
# Return
return
def __del__(self):
"""
Destructor. Close all FITS files.
"""
# Close calibration
self.close()
# Return
return
def make_dirs(self):
"""
Generate CALDB directory structure for one observation identifier.
The structure is given by
data///bcf/
where is "cta" and is the instrument specified in the
CALDB constructor (the instrument may be used for different array
configurations).
Parameters:
None
Keywords:
None
"""
# Set base path
self.base_dir = "data"
self.base_dir += "/"+self.cal_tel.lower()
self.base_dir += "/"+self.cal_inst.lower()
# Set directory names
self.bcf_dir = self.base_dir+"/bcf"
# Optionally prefix path
if len(self.path) > 0:
self.base_path = self.path+"/"+self.base_dir
self.bcf_path = self.path+"/"+self.bcf_dir
else:
self.base_path = self.base_dir
self.bcf_path = self.bcf_dir
# Create directory structure
if not os.path.isdir(self.bcf_path):
os.makedirs(self.bcf_path)
# Return
return
def add(self, rspname, split=False, clobber=True):
"""
Add new calibration. The actual version will put
all calibrations in the same file, although each part of the response
function will have its own logical name. We can thus easily modify
the script to put each calibration information in a separate file.
Parameters:
rspname - Response name
Keywords:
split - Split IRF over several files?
clobber - Overwrite existing files?
"""
# Set calibrate file names
if split:
self.ea_file = "ea_"+rspname+".dat"
self.psf_file = "psf_"+rspname+".dat"
self.edisp_file = "edisp_"+rspname+".dat"
self.bgd_file = "bgd_"+rspname+".dat"
else:
self.ea_file = "irf_"+rspname+".dat"
self.psf_file = "irf_"+rspname+".dat"
self.edisp_file = "irf_"+rspname+".dat"
self.bgd_file = "irf_"+rspname+".dat"
# Open calibration database index
if self.cif == None:
self.cif = gammalib.GFits(self.base_path+"/caldb.indx", True)
# If file has no CIF extension than create it now
try:
self.hdu_cif = self.cif.table("CIF")
except:
self.create_cif()
self.hdu_cif = self.cif.table("CIF")
# Set response name
self.cal_name = "NAME("+rspname+")"
# Return
return
def close(self):
"""
Close calibration FITS files.
Parameters:
None
Keywords:
None
"""
# Add information to CIF. We do this now as before we did not
# necessarily have all the information at hand (in particular
# about the boundaries)
#self.add_cif_info()
# Close CIF
if self.cif != None:
self.cif.save(True)
self.cif.close()
self.cif = None
# Free
self.cif = None
# Return
return
def create_cif(self):
"""
Create Calibration Index File (CIF) extension in CIF FITS file.
Parameters:
None
Keywords:
None
"""
# Create binary table
table = gammalib.GFitsBinTable()
# Set boundary
# Attach columns. Reference: CAL/GEN/92-008
table.append(gammalib.GFitsTableStringCol("TELESCOP", 0, 10))
table.append(gammalib.GFitsTableStringCol("INSTRUME", 0, 10))
table.append(gammalib.GFitsTableStringCol("DETNAM", 0, 20))
table.append(gammalib.GFitsTableStringCol("FILTER", 0, 10))
table.append(gammalib.GFitsTableStringCol("CAL_DEV", 0, 20))
table.append(gammalib.GFitsTableStringCol("CAL_DIR", 0, 70))
table.append(gammalib.GFitsTableStringCol("CAL_FILE", 0, 40))
table.append(gammalib.GFitsTableStringCol("CAL_CLAS", 0, 3))
table.append(gammalib.GFitsTableStringCol("CAL_DTYP", 0, 4))
table.append(gammalib.GFitsTableStringCol("CAL_CNAM", 0, 20))
table.append(gammalib.GFitsTableStringCol("CAL_CBD", 0, 70, 9))
table.append(gammalib.GFitsTableShortCol("CAL_XNO", 0))
table.append(gammalib.GFitsTableStringCol("CAL_VSD", 0, 10))
table.append(gammalib.GFitsTableStringCol("CAL_VST", 0, 8))
table.append(gammalib.GFitsTableDoubleCol("REF_TIME", 0))
table.append(gammalib.GFitsTableShortCol("CAL_QUAL", 0))
table.append(gammalib.GFitsTableStringCol("CAL_DATE", 0, 8))
table.append(gammalib.GFitsTableStringCol("CAL_DESC", 0, 70))
# Set keywords. Reference: CAL/GEN/92-008
table.extname("CIF")
table.card("CIFVERSN", "1992a", "Version of CIF format")
# Attach table to FITS file. Note that at this moment the
# FITS table gets connected to the FITS file. Yet since
# nothing was yet written to the FITS file, we cannot read
# anything from it.
self.cif.append(table)
# Return
return
def add_cif_info(self):
"""
Add information to CIF extension.
Parameters:
None
Keywords:
None
"""
# Set boundaries
self.ea_bounds = [self.cal_name, self.cal_version, self.cal_cut, self.cal_analysis]
self.psf_bounds = [self.cal_name, self.cal_version, self.cal_cut, self.cal_analysis]
self.edisp_bounds = [self.cal_name, self.cal_version, self.cal_cut, self.cal_analysis]
self.bgd_bounds = [self.cal_name, self.cal_version, self.cal_cut, self.cal_analysis]
# Append 4 rows to CIF extension
self.hdu_cif.append_rows(4)
# Add generic information for these 4 rows
for i in range(4):
# Set row number
row = i+self.hdu_cif.nrows()-4
# Set element
self.hdu_cif["TELESCOP"][row] = self.cal_tel
self.hdu_cif["INSTRUME"][row] = self.cal_inst
self.hdu_cif["DETNAM"][row] = self.cal_det
self.hdu_cif["FILTER"][row] = self.cal_flt
self.hdu_cif["CAL_DEV"][row] = "ONLINE"
self.hdu_cif["CAL_CLAS"][row] = self.cal_class
self.hdu_cif["CAL_DTYP"][row] = self.cal_type
self.hdu_cif["CAL_VSD"][row] = self.val_date
self.hdu_cif["CAL_VST"][row] = self.val_time
self.hdu_cif["REF_TIME"][row] = self.ref_time
self.hdu_cif["CAL_QUAL"][row] = self.cal_qual
self.hdu_cif["CAL_DATE"][row] = self.cal_date
# Add effective area information
row = self.hdu_cif.nrows()-4
self.hdu_cif["CAL_DIR"][row] = self.bcf_dir
self.hdu_cif["CAL_FILE"][row] = self.ea_file
self.hdu_cif["CAL_CNAM"][row] = self.ea_name
self.hdu_cif["CAL_DESC"][row] = self.ea_desc
self.hdu_cif["CAL_XNO"][row] = 1
for n in range(9):
if n >= len(self.ea_bounds):
self.hdu_cif["CAL_CBD"][row, n] = "NONE"
else:
self.hdu_cif["CAL_CBD"][row, n] = self.ea_bounds[n]
# Add point spread function information
row = self.hdu_cif.nrows()-3
self.hdu_cif["CAL_DIR"][row] = self.bcf_dir
self.hdu_cif["CAL_FILE"][row] = self.psf_file
self.hdu_cif["CAL_CNAM"][row] = self.psf_name
self.hdu_cif["CAL_DESC"][row] = self.psf_desc
self.hdu_cif["CAL_XNO"][row] = 1
for n in range(9):
if n >= len(self.psf_bounds):
self.hdu_cif["CAL_CBD"][row, n] = "NONE"
else:
self.hdu_cif["CAL_CBD"][row, n] = self.psf_bounds[n]
# Add energy dispersion information
row = self.hdu_cif.nrows()-2
self.hdu_cif["CAL_DIR"][row] = self.bcf_dir
self.hdu_cif["CAL_FILE"][row] = self.edisp_file
self.hdu_cif["CAL_CNAM"][row] = self.edisp_name
self.hdu_cif["CAL_DESC"][row] = self.edisp_desc
self.hdu_cif["CAL_XNO"][row] = 1
for n in range(9):
if n >= len(self.edisp_bounds):
self.hdu_cif["CAL_CBD"][row, n] = "NONE"
else:
self.hdu_cif["CAL_CBD"][row, n] = self.edisp_bounds[n]
# Add background information
row = self.hdu_cif.nrows()-1
self.hdu_cif["CAL_DIR"][row] = self.bcf_dir
self.hdu_cif["CAL_FILE"][row] = self.bgd_file
self.hdu_cif["CAL_CNAM"][row] = self.bgd_name
self.hdu_cif["CAL_DESC"][row] = self.bgd_desc
self.hdu_cif["CAL_XNO"][row] = 1
for n in range(9):
if n >= len(self.bgd_bounds):
self.hdu_cif["CAL_CBD"][row, n] = "NONE"
else:
self.hdu_cif["CAL_CBD"][row, n] = self.bgd_bounds[n]
# Return
return
def root2caldb(self, filename):
"""
Generate files.
Parameters:
filename - Performance file name
"""
# Open ROOT performance file
rootfile = TFile(filename)
# Set filenames
ea_filename = self.bcf_path+"/"+self.ea_file
psf_filename = self.bcf_path+"/"+self.psf_file
edisp_filename = self.bcf_path+"/"+self.edisp_file
bgd_filename = self.bcf_path+"/"+self.bgd_file
# Open ASCII performance tables
if self.ea_file == self.psf_file and \
self.ea_file == self.edisp_file and \
self.ea_file == self.bgd_file :
split = False
fprf = open(ea_filename, "w")
files = [fprf]
else:
split = True
fea = open(ea_filename, "w")
fpsf = open(psf_filename, "w")
fedisp = open(edisp_filename, "w")
fbgd = open(bgd_filename, "w")
files = [fea, fpsf, fedisp, fbgd]
# Write header
for file in files:
file.write("log(E) Area r68 r80 ERes. BG Rate Diff Sens\n")
# Get histograms. Konrad's root files do not have an EffectiveArea80
# histogram, but his effective area is for 80% containment radius
# anyways, so we simply read this histogram into aeff80.
sens = TH1F()
bgrate = TH1F()
bgratesqdeg = TH1F()
aeff = TH1F()
aeff80 = TH1F()
angres = TH1F()
angres80 = TH1F()
eres = TH1F()
rootfile.GetObject("DiffSens", sens)
rootfile.GetObject("BGRate", bgrate)
rootfile.GetObject("BGRatePerSqDeg", bgratesqdeg)
rootfile.GetObject("EffectiveArea", aeff)
try:
rootfile.GetObject("EffectiveArea80", aeff80)
except:
rootfile.GetObject("EffectiveArea", aeff80)
rootfile.GetObject("AngRes", angres)
rootfile.GetObject("AngRes80", angres80)
rootfile.GetObject("ERes", eres)
# Setup vectors
energies = bgrate.GetXaxis()
nbins_eng = energies.GetNbins()
for i in range(nbins_eng):
# Get logE and background rate per squared degree
logE = energies.GetBinCenter(i+1)
bgd = bgrate.GetBinContent(i+1,1)
bgdsq = bgratesqdeg.GetBinContent(i+1,1)
area = aeff.GetBinContent(i+1,1)
area80 = aeff80.GetBinContent(i+1,1)
r68 = angres.GetBinContent(i+1,1)
r80 = angres80.GetBinContent(i+1,1)
dE = eres.GetBinContent(i+1,1)
diffs = sens.GetBinContent(i+1,1)
# Skip any NaNs
if math.isnan(area80):
continue
# Compute energy (in MeV)
energy = math.pow(10.0, logE)*1.0e6
emin = math.pow(10.0, logE-0.1)*1.0e6
emax = math.pow(10.0, logE+0.1)*1.0e6
ewidth = emax-emin
# Convert into background rate per steradian and MeV
bkg_rate = bgdsq / (0.01745329*0.01745329) / ewidth
# Compute control background rate (this only works for KB files
# as they are for 80% containment radius). But we don't use this
# anyways, it's just for control on display ...
omega = 2.0 * math.pi * (1.0 - math.cos(math.radians(r80)))
if omega > 0.0:
bkg_rate2 = bgd / omega / ewidth
else:
bkg_rate2 = 0.0
# Compute full effective area by dividing area80/0.80
area = area80/0.80
# Write results in file
line = "%.1f %.1f %.4f %.4f %.4f %.5e %.5e" % \
(logE, area, r68, r80, dE, bgd, diffs)
for file in files:
file.write(line+"\n")
#fbkg.write(str(energy)+" "+str(bkg_rate)+"\n")
# Write trailer
for file in files:
file.write("---------------------------------------------\n")
file.write("Notes\n")
file.write(" 1) log(E) = log10(E/TeV) - bin centre\n")
file.write(" 2) Eff Area - in square metres after background cut (no theta cut)\n")
file.write(" 3) Ang. Res - 68% containment radius of gamma-ray PSF post cuts - in degrees\n")
file.write(" 4) Ang. Res - 80% containment radius of gamma-ray PSF post cuts - in degrees\n")
file.write(" 5) Fractional Energy Resolution (rms)\n")
file.write(" 6) BG Rate - inside point-source selection region - post call cuts - in Hz\n")
file.write(" 7) Diff Sens - differential sensitivity for this bin expressed as E^2 dN/dE\n")
file.write(" - in erg cm^-2 s^-1 - for a 50 hours exposure - 5 sigma significance including\n")
file.write(" systematics and statistics and at least 10 photons.\n")
# Close files
for file in files:
file.close()
# Close ROOT performance file
rootfile.Close()
# Add information to CIF. We do this now as before we did not
# necessarily have all the information at hand (in particular
# about the boundaries)
self.add_cif_info()
# Return
return
#==========================#
# Main routine entry point #
#==========================#
if __name__ == '__main__':
"""
"""
# Get ROOT filename from command line argument
if (len(sys.argv) > 1):
filename = sys.argv[1]
else:
db = "/Users/jurgen/Documents/Travail/Projects/CTA/WP-MC/root/Kb_all_20deg_root"
#db = "/Users/jurgen/Documents/Travail/Projects/CTA/WP-MC/root/Kb_all_50deg_root"
# Get list of all performance files
files = glob.glob(db+"/*.root")
files.sort()
# Allocate caldb
irf = caldb("kb")
# Loop over all files
for file in files:
# Get filename
head, tail = os.path.split(file)
# Build name
name = tail.strip(".root")
if name.find("kb_") != -1:
name = name.replace("_20deg", "")
elif name.find("IFAE_") != -1:
name = name.replace("Subarray", "")
name = name.replace("IFAE_", "")
name = "IFAE_"+name
i = name.find("hours")
if i != -1:
name = name[0:i+1]
print(tail)
# Open calibration file
irf.add(name)
# Translate ROOT to CALDB information
irf.root2caldb(file)