From 8bcf9b7964be96213423b2eb9fad688befed939b Mon Sep 17 00:00:00 2001 From: Jürgen Knödlseder Date: Wed, 7 Jun 2017 23:39:32 +0200 Subject: [PATCH] Integrate code --- cscripts/csresmap.py | 23 ++++++++++++----------- doc/source/users/reference_manual/cscaldb.rst | 10 +++++----- doc/source/users/reference_manual/csebins.rst | 10 +++++----- doc/source/users/reference_manual/csfindobs.rst | 12 ++++++------ doc/source/users/reference_manual/csiactcopy.rst | 12 ++++++------ doc/source/users/reference_manual/csiactdata.rst | 12 ++++++------ doc/source/users/reference_manual/csiactobs.rst | 12 ++++++------ doc/source/users/reference_manual/cslightcrv.rst | 10 +++++----- doc/source/users/reference_manual/csmodelinfo.rst | 10 +++++----- doc/source/users/reference_manual/csmodelmerge.rst | 12 ++++++------ doc/source/users/reference_manual/csmodelselect.rst | 10 +++++----- doc/source/users/reference_manual/csobs2caldb.rst | 10 +++++----- doc/source/users/reference_manual/csobsdef.rst | 10 +++++----- doc/source/users/reference_manual/csobsinfo.rst | 10 +++++----- doc/source/users/reference_manual/csobsselect.rst | 10 +++++----- doc/source/users/reference_manual/csphasecrv.rst | 10 +++++----- doc/source/users/reference_manual/cspull.rst | 10 +++++----- doc/source/users/reference_manual/csresmap.rst | 25 +++++++++++++------------ doc/source/users/reference_manual/cssens.rst | 10 +++++----- doc/source/users/reference_manual/csspec.rst | 10 +++++----- doc/source/users/reference_manual/cssrcdetect.rst | 10 +++++----- doc/source/users/reference_manual/cstsdist.rst | 10 +++++----- doc/source/users/reference_manual/cstsmapmerge.rst | 10 +++++----- doc/source/users/reference_manual/cstsmapsplit.rst | 10 +++++----- doc/source/users/reference_manual/csviscube.rst | 10 +++++----- doc/source/users/reference_manual/ctbin.rst | 10 +++++----- doc/source/users/reference_manual/ctbkgcube.rst | 10 +++++----- doc/source/users/reference_manual/ctbutterfly.rst | 10 +++++----- doc/source/users/reference_manual/ctcubemask.rst | 10 +++++----- doc/source/users/reference_manual/ctedispcube.rst | 10 +++++----- doc/source/users/reference_manual/cterror.rst | 10 +++++----- doc/source/users/reference_manual/ctexpcube.rst | 10 +++++----- doc/source/users/reference_manual/ctlike.rst | 10 +++++----- doc/source/users/reference_manual/ctmapcube.rst | 10 +++++----- doc/source/users/reference_manual/ctmodel.rst | 10 +++++----- doc/source/users/reference_manual/ctobssim.rst | 10 +++++----- doc/source/users/reference_manual/ctphase.rst | 10 +++++----- doc/source/users/reference_manual/ctprob.rst | 10 +++++----- doc/source/users/reference_manual/ctpsfcube.rst | 10 +++++----- doc/source/users/reference_manual/ctselect.rst | 10 +++++----- doc/source/users/reference_manual/ctskymap.rst | 10 +++++----- doc/source/users/reference_manual/cttsmap.rst | 10 +++++----- doc/source/users/reference_manual/ctulimit.rst | 10 +++++----- 43 files changed, 235 insertions(+), 233 deletions(-) diff --git a/cscripts/csresmap.py b/cscripts/csresmap.py index a72ca50..6acbb9e 100755 --- a/cscripts/csresmap.py +++ b/cscripts/csresmap.py @@ -19,6 +19,7 @@ # # ========================================================================== import sys +import math import gammalib import ctools @@ -241,21 +242,21 @@ class csresmap(ctools.cscript): # Calculate significance from Li&Ma derivation elif algorithm == 'SIGNIFICANCE': + + # Compute sign map signmap = (self._resmap - modelmap).sign() + + # Compute logarithm of map. For that we mask pixels logmap = self._resmap/modelmap - # Masking pixels with zero counts. Put a small value >0 for log - # calculation and restore the zero value afterwards - mask = [] for i in range(logmap.npix()): - # Testing pixel i and map 0 (there is one map only after stacking) - if logmap[i,0] == 0: - mask.append(i) - logmap[i,0] = 1e-10 - logmap = logmap.log() - for i in mask: - logmap[i,0] = 0. + if logmap[i] > 0.0: + logmap[i] = math.log(logmap[i]) + else: + logmap[i] = 0.0 + + # Compute significance map signif_squared_map = (self._resmap*logmap) + modelmap - self._resmap - signif_squared_map *= 2. + signif_squared_map *= 2.0 unsigned_resmap = signif_squared_map.sqrt() self._resmap = unsigned_resmap * signmap diff --git a/doc/source/users/reference_manual/cscaldb.rst b/doc/source/users/reference_manual/cscaldb.rst index acb70de..e5ed2f1 100644 --- a/doc/source/users/reference_manual/cscaldb.rst +++ b/doc/source/users/reference_manual/cscaldb.rst @@ -25,15 +25,15 @@ Standard parameters ``(chatter = 2) [integer]`` Verbosity of the executable: - chatter = 0: no information will be logged + ``chatter = 0``: no information will be logged - chatter = 1: only errors will be logged + ``chatter = 1``: only errors will be logged - chatter = 2: errors and actions will be logged + ``chatter = 2``: errors and actions will be logged - chatter = 3: report about the task execution + ``chatter = 3``: report about the task execution - chatter = 4: detailed report about the task execution + ``chatter = 4``: detailed report about the task execution ``(clobber = yes) [boolean]`` Specifies whether an existing output file should be overwritten. diff --git a/doc/source/users/reference_manual/csebins.rst b/doc/source/users/reference_manual/csebins.rst index 7a2ca11..872db86 100644 --- a/doc/source/users/reference_manual/csebins.rst +++ b/doc/source/users/reference_manual/csebins.rst @@ -52,15 +52,15 @@ Standard parameters ``(chatter = 2) [integer]`` Verbosity of the executable: - chatter = 0: no information will be logged + ``chatter = 0``: no information will be logged - chatter = 1: only errors will be logged + ``chatter = 1``: only errors will be logged - chatter = 2: errors and actions will be logged + ``chatter = 2``: errors and actions will be logged - chatter = 3: report about the task execution + ``chatter = 3``: report about the task execution - chatter = 4: detailed report about the task execution + ``chatter = 4``: detailed report about the task execution ``(clobber = yes) [boolean]`` Specifies whether an existing energy boundaries output file should be overwritten. diff --git a/doc/source/users/reference_manual/csfindobs.rst b/doc/source/users/reference_manual/csfindobs.rst index a3ba7a8..e70cf70 100644 --- a/doc/source/users/reference_manual/csfindobs.rst +++ b/doc/source/users/reference_manual/csfindobs.rst @@ -69,15 +69,15 @@ Standard parameters ``(chatter = 2) [integer]`` Verbosity of the executable: - chatter = 0: no information will be logged + ``chatter = 0``: no information will be logged - chatter = 1: only errors will be logged + ``chatter = 1``: only errors will be logged - chatter = 2: errors and actions will be logged + ``chatter = 2``: errors and actions will be logged - chatter = 3: report about the task execution + ``chatter = 3``: report about the task execution - chatter = 4: detailed report about the task execution + ``chatter = 4``: detailed report about the task execution ``(clobber = yes) [boolean]`` Specifies whether an existing output runlist should be overwritten. @@ -95,4 +95,4 @@ Standard parameters Related tools or scripts ------------------------ -:doc:`csiactobs` \ No newline at end of file +:doc:`csiactobs` diff --git a/doc/source/users/reference_manual/csiactcopy.rst b/doc/source/users/reference_manual/csiactcopy.rst index 6d0cf23..437305a 100644 --- a/doc/source/users/reference_manual/csiactcopy.rst +++ b/doc/source/users/reference_manual/csiactcopy.rst @@ -49,15 +49,15 @@ Standard parameters ``(chatter = 2) [integer]`` Verbosity of the executable: - chatter = 0: no information will be logged + ``chatter = 0``: no information will be logged - chatter = 1: only errors will be logged + ``chatter = 1``: only errors will be logged - chatter = 2: errors and actions will be logged + ``chatter = 2``: errors and actions will be logged - chatter = 3: report about the task execution + ``chatter = 3``: report about the task execution - chatter = 4: detailed report about the task execution + ``chatter = 4``: detailed report about the task execution ``(clobber = yes) [boolean]`` Specifies whether existing output files should be overwritten. @@ -75,4 +75,4 @@ Standard parameters Related tools or scripts ------------------------ -:doc:`csiactdata` \ No newline at end of file +:doc:`csiactdata` diff --git a/doc/source/users/reference_manual/csiactdata.rst b/doc/source/users/reference_manual/csiactdata.rst index 885281e..46046f9 100644 --- a/doc/source/users/reference_manual/csiactdata.rst +++ b/doc/source/users/reference_manual/csiactdata.rst @@ -33,15 +33,15 @@ Standard parameters ``(chatter = 2) [integer]`` Verbosity of the executable: - chatter = 0: no information will be logged + ``chatter = 0``: no information will be logged - chatter = 1: only errors will be logged + ``chatter = 1``: only errors will be logged - chatter = 2: errors and actions will be logged + ``chatter = 2``: errors and actions will be logged - chatter = 3: report about the task execution + ``chatter = 3``: report about the task execution - chatter = 4: detailed report about the task execution + ``chatter = 4``: detailed report about the task execution ``(clobber = yes) [boolean]`` Specifies whether existing output files should be overwritten. @@ -59,4 +59,4 @@ Standard parameters Related tools or scripts ------------------------ -:doc:`csfindobs` \ No newline at end of file +:doc:`csfindobs` diff --git a/doc/source/users/reference_manual/csiactobs.rst b/doc/source/users/reference_manual/csiactobs.rst index 900faf1..829b2b7 100644 --- a/doc/source/users/reference_manual/csiactobs.rst +++ b/doc/source/users/reference_manual/csiactobs.rst @@ -113,15 +113,15 @@ Standard parameters ``(chatter = 2) [integer]`` Verbosity of the executable: - chatter = 0: no information will be logged + ``chatter = 0``: no information will be logged - chatter = 1: only errors will be logged + ``chatter = 1``: only errors will be logged - chatter = 2: errors and actions will be logged + ``chatter = 2``: errors and actions will be logged - chatter = 3: report about the task execution + ``chatter = 3``: report about the task execution - chatter = 4: detailed report about the task execution + ``chatter = 4``: detailed report about the task execution ``(clobber = yes) [boolean]`` Specifies whether existing output files should be overwritten. @@ -139,4 +139,4 @@ Standard parameters Related tools or scripts ------------------------ -:doc:`csiactobs` \ No newline at end of file +:doc:`csiactobs` diff --git a/doc/source/users/reference_manual/cslightcrv.rst b/doc/source/users/reference_manual/cslightcrv.rst index d6a2f18..4031e81 100644 --- a/doc/source/users/reference_manual/cslightcrv.rst +++ b/doc/source/users/reference_manual/cslightcrv.rst @@ -114,15 +114,15 @@ Standard parameters ``(chatter = 2) [integer]`` Verbosity of the executable: - chatter = 0: no information will be logged + ``chatter = 0``: no information will be logged - chatter = 1: only errors will be logged + ``chatter = 1``: only errors will be logged - chatter = 2: errors and actions will be logged + ``chatter = 2``: errors and actions will be logged - chatter = 3: report about the task execution + ``chatter = 3``: report about the task execution - chatter = 4: detailed report about the task execution + ``chatter = 4``: detailed report about the task execution ``(clobber = yes) [boolean]`` Specifies whether an existing light curve output file should be overwritten. diff --git a/doc/source/users/reference_manual/csmodelinfo.rst b/doc/source/users/reference_manual/csmodelinfo.rst index 99eb69b..3592450 100644 --- a/doc/source/users/reference_manual/csmodelinfo.rst +++ b/doc/source/users/reference_manual/csmodelinfo.rst @@ -72,15 +72,15 @@ Standard parameters ``(chatter = 2) [integer]`` Verbosity of the executable: - chatter = 0: no information will be logged + ``chatter = 0``: no information will be logged - chatter = 1: only errors will be logged + ``chatter = 1``: only errors will be logged - chatter = 2: errors and actions will be logged + ``chatter = 2``: errors and actions will be logged - chatter = 3: report about the task execution + ``chatter = 3``: report about the task execution - chatter = 4: detailed report about the task execution + ``chatter = 4``: detailed report about the task execution ``(clobber = yes) [boolean]`` Specifies whether existing output files should be overwritten. diff --git a/doc/source/users/reference_manual/csmodelmerge.rst b/doc/source/users/reference_manual/csmodelmerge.rst index 61dc7ee..b639296 100644 --- a/doc/source/users/reference_manual/csmodelmerge.rst +++ b/doc/source/users/reference_manual/csmodelmerge.rst @@ -39,15 +39,15 @@ Standard parameters ``(chatter = 2) [integer]`` Verbosity of the executable: - chatter = 0: no information will be logged + ``chatter = 0``: no information will be logged - chatter = 1: only errors will be logged + ``chatter = 1``: only errors will be logged - chatter = 2: errors and actions will be logged + ``chatter = 2``: errors and actions will be logged - chatter = 3: report about the task execution + ``chatter = 3``: report about the task execution - chatter = 4: detailed report about the task execution + ``chatter = 4``: detailed report about the task execution ``(clobber = yes) [boolean]`` Specifies whether an existing output model file should be overwritten. @@ -65,4 +65,4 @@ Standard parameters Related tools or scripts ------------------------ -None \ No newline at end of file +None diff --git a/doc/source/users/reference_manual/csmodelselect.rst b/doc/source/users/reference_manual/csmodelselect.rst index 6a58f6c..ae8088e 100644 --- a/doc/source/users/reference_manual/csmodelselect.rst +++ b/doc/source/users/reference_manual/csmodelselect.rst @@ -56,15 +56,15 @@ Standard parameters ``(chatter = 2) [integer]`` Verbosity of the executable: - chatter = 0: no information will be logged + ``chatter = 0``: no information will be logged - chatter = 1: only errors will be logged + ``chatter = 1``: only errors will be logged - chatter = 2: errors and actions will be logged + ``chatter = 2``: errors and actions will be logged - chatter = 3: report about the task execution + ``chatter = 3``: report about the task execution - chatter = 4: detailed report about the task execution + ``chatter = 4``: detailed report about the task execution ``(clobber = yes) [boolean]`` Specifies whether an existing output model file should be overwritten. diff --git a/doc/source/users/reference_manual/csobs2caldb.rst b/doc/source/users/reference_manual/csobs2caldb.rst index e9b475d..de77e1c 100644 --- a/doc/source/users/reference_manual/csobs2caldb.rst +++ b/doc/source/users/reference_manual/csobs2caldb.rst @@ -49,15 +49,15 @@ Standard parameters ``(chatter = 2) [integer]`` Verbosity of the executable: - chatter = 0: no information will be logged + ``chatter = 0``: no information will be logged - chatter = 1: only errors will be logged + ``chatter = 1``: only errors will be logged - chatter = 2: errors and actions will be logged + ``chatter = 2``: errors and actions will be logged - chatter = 3: report about the task execution + ``chatter = 3``: report about the task execution - chatter = 4: detailed report about the task execution + ``chatter = 4``: detailed report about the task execution ``(clobber = yes) [boolean]`` Specifies whether an existing output file should be overwritten. diff --git a/doc/source/users/reference_manual/csobsdef.rst b/doc/source/users/reference_manual/csobsdef.rst index 732c7c6..2616476 100644 --- a/doc/source/users/reference_manual/csobsdef.rst +++ b/doc/source/users/reference_manual/csobsdef.rst @@ -89,15 +89,15 @@ Standard parameters ``(chatter = 2) [integer]`` Verbosity of the executable: - chatter = 0: no information will be logged + ``chatter = 0``: no information will be logged - chatter = 1: only errors will be logged + ``chatter = 1``: only errors will be logged - chatter = 2: errors and actions will be logged + ``chatter = 2``: errors and actions will be logged - chatter = 3: report about the task execution + ``chatter = 3``: report about the task execution - chatter = 4: detailed report about the task execution + ``chatter = 4``: detailed report about the task execution ``(clobber = yes) [boolean]`` Specifies whether an existing Observation Definition XML file should be overwritten. diff --git a/doc/source/users/reference_manual/csobsinfo.rst b/doc/source/users/reference_manual/csobsinfo.rst index 9374a6b..9240802 100644 --- a/doc/source/users/reference_manual/csobsinfo.rst +++ b/doc/source/users/reference_manual/csobsinfo.rst @@ -59,15 +59,15 @@ Standard parameters ``(chatter = 2) [integer]`` Verbosity of the executable: - chatter = 0: no information will be logged + ``chatter = 0``: no information will be logged - chatter = 1: only errors will be logged + ``chatter = 1``: only errors will be logged - chatter = 2: errors and actions will be logged + ``chatter = 2``: errors and actions will be logged - chatter = 3: report about the task execution + ``chatter = 3``: report about the task execution - chatter = 4: detailed report about the task execution + ``chatter = 4``: detailed report about the task execution ``(clobber = yes) [boolean]`` Specifies whether an existing output file should be overwritten. diff --git a/doc/source/users/reference_manual/csobsselect.rst b/doc/source/users/reference_manual/csobsselect.rst index 997515b..2501eca 100644 --- a/doc/source/users/reference_manual/csobsselect.rst +++ b/doc/source/users/reference_manual/csobsselect.rst @@ -57,15 +57,15 @@ Standard parameters ``(chatter = 2) [integer]`` Verbosity of the executable: - chatter = 0: no information will be logged + ``chatter = 0``: no information will be logged - chatter = 1: only errors will be logged + ``chatter = 1``: only errors will be logged - chatter = 2: errors and actions will be logged + ``chatter = 2``: errors and actions will be logged - chatter = 3: report about the task execution + ``chatter = 3``: report about the task execution - chatter = 4: detailed report about the task execution + ``chatter = 4``: detailed report about the task execution ``(clobber = yes) [boolean]`` Specifies whether an existing output model file should be overwritten diff --git a/doc/source/users/reference_manual/csphasecrv.rst b/doc/source/users/reference_manual/csphasecrv.rst index 8c2d944..34bfba0 100644 --- a/doc/source/users/reference_manual/csphasecrv.rst +++ b/doc/source/users/reference_manual/csphasecrv.rst @@ -94,15 +94,15 @@ Standard parameters ``(chatter = 2) [integer]`` Verbosity of the executable: - chatter = 0: no information will be logged + ``chatter = 0``: no information will be logged - chatter = 1: only errors will be logged + ``chatter = 1``: only errors will be logged - chatter = 2: errors and actions will be logged + ``chatter = 2``: errors and actions will be logged - chatter = 3: report about the task execution + ``chatter = 3``: report about the task execution - chatter = 4: detailed report about the task execution + ``chatter = 4``: detailed report about the task execution ``(clobber = yes) [boolean]`` Specifies whether an existing light curve output file should be overwritten. diff --git a/doc/source/users/reference_manual/cspull.rst b/doc/source/users/reference_manual/cspull.rst index 15190b9..19853d1 100644 --- a/doc/source/users/reference_manual/cspull.rst +++ b/doc/source/users/reference_manual/cspull.rst @@ -110,15 +110,15 @@ Standard parameters ``(chatter = 2) [integer]`` Verbosity of the executable: - chatter = 0: no information will be logged + ``chatter = 0``: no information will be logged - chatter = 1: only errors will be logged + ``chatter = 1``: only errors will be logged - chatter = 2: errors and actions will be logged + ``chatter = 2``: errors and actions will be logged - chatter = 3: report about the task execution + ``chatter = 3``: report about the task execution - chatter = 4: detailed report about the task execution + ``chatter = 4``: detailed report about the task execution ``(clobber = yes) [boolean]`` Specifies whether an existing output file should be overwritten. diff --git a/doc/source/users/reference_manual/csresmap.rst b/doc/source/users/reference_manual/csresmap.rst index 2ed0619..5321ed6 100644 --- a/doc/source/users/reference_manual/csresmap.rst +++ b/doc/source/users/reference_manual/csresmap.rst @@ -16,11 +16,12 @@ be provided so that the script can bin the data internally. The model is then convolved with the instrumental response function for that binning and used for residual computation. Before residual computation, the counts and model cubes are collapsed into maps by summing over all -energies. Three options exist then for residual computation: +energies. Four options exist then for residual computation: * the subtraction of the model from the counts (SUB) * the subtraction and division by the model (SUBDIV) * the subtraction and division by the square root of the model (SUBDIVSQRT) +* the computation of the significance using Li & Ma (SIGNIFICANCE) The residual map is written into a FITS file. @@ -95,16 +96,16 @@ General parameters Cube bin size (in degrees/pixel). ``(algorithm = SUBDIV) [string]`` - Algorithm used to generate the residual map. + Algorithm used to generate the residual map: - SUB: DATA - MODEL + ``SUB``: :math:`DATA - MODEL` - SUBDIV: (DATA - MODEL)/MODEL + ``SUBDIV``: :math:`\frac{DATA - MODEL}{MODEL}` - SUBDIVSQRT: (DATA - MODEL)/sqrt(MODEL) + ``SUBDIVSQRT``: :math:`\frac{DATA - MODEL}{\sqrt{MODEL}}` + + ``SIGNIFICANCE``: :math:`{\rm sign}(DATA-MODEL) \times \sqrt{ 2 \times ( DATA \times \ln \left(\frac{DATA}{MODEL} \right) + MODEL - DATA ) }` - SIGNIF: sign(DATA-MODEL) * sqrt( 2*( DATA*log(DATA/MODEL) + MODEL - DATA ) ) - Standard parameters ------------------- @@ -114,15 +115,15 @@ Standard parameters ``(chatter = 2) [integer]`` Verbosity of the executable: - chatter = 0: no information will be logged + ``chatter = 0``: no information will be logged - chatter = 1: only errors will be logged + ``chatter = 1``: only errors will be logged - chatter = 2: errors and actions will be logged + ``chatter = 2``: errors and actions will be logged - chatter = 3: report about the task execution + ``chatter = 3``: report about the task execution - chatter = 4: detailed report about the task execution + ``chatter = 4``: detailed report about the task execution ``(clobber = yes) [boolean]`` Specifies whether an existing residual map file should be overwritten. diff --git a/doc/source/users/reference_manual/cssens.rst b/doc/source/users/reference_manual/cssens.rst index 2cec9c5..57be9a4 100644 --- a/doc/source/users/reference_manual/cssens.rst +++ b/doc/source/users/reference_manual/cssens.rst @@ -106,15 +106,15 @@ Standard parameters ``(chatter = 2) [integer]`` Verbosity of the executable: - chatter = 0: no information will be logged + ``chatter = 0``: no information will be logged - chatter = 1: only errors will be logged + ``chatter = 1``: only errors will be logged - chatter = 2: errors and actions will be logged + ``chatter = 2``: errors and actions will be logged - chatter = 3: report about the task execution + ``chatter = 3``: report about the task execution - chatter = 4: detailed report about the task execution + ``chatter = 4``: detailed report about the task execution ``(clobber = yes) [boolean]`` Specifies whether an existing output file should be overwritten. diff --git a/doc/source/users/reference_manual/csspec.rst b/doc/source/users/reference_manual/csspec.rst index 992f1eb..6d95f6a 100644 --- a/doc/source/users/reference_manual/csspec.rst +++ b/doc/source/users/reference_manual/csspec.rst @@ -115,15 +115,15 @@ Standard parameters ``(chatter = 2) [integer]`` Verbosity of the executable: - chatter = 0: no information will be logged + ``chatter = 0``: no information will be logged - chatter = 1: only errors will be logged + ``chatter = 1``: only errors will be logged - chatter = 2: errors and actions will be logged + ``chatter = 2``: errors and actions will be logged - chatter = 3: report about the task execution + ``chatter = 3``: report about the task execution - chatter = 4: detailed report about the task execution + ``chatter = 4``: detailed report about the task execution ``(clobber = yes) [boolean]`` Specifies whether an existing source spectrum output file should be overwritten. diff --git a/doc/source/users/reference_manual/cssrcdetect.rst b/doc/source/users/reference_manual/cssrcdetect.rst index 6c3035f..eb0dbd2 100644 --- a/doc/source/users/reference_manual/cssrcdetect.rst +++ b/doc/source/users/reference_manual/cssrcdetect.rst @@ -67,15 +67,15 @@ Standard parameters ``(chatter = 2) [integer]`` Verbosity of the executable: - chatter = 0: no information will be logged + ``chatter = 0``: no information will be logged - chatter = 1: only errors will be logged + ``chatter = 1``: only errors will be logged - chatter = 2: errors and actions will be logged + ``chatter = 2``: errors and actions will be logged - chatter = 3: report about the task execution + ``chatter = 3``: report about the task execution - chatter = 4: detailed report about the task execution + ``chatter = 4``: detailed report about the task execution ``(clobber = yes) [boolean]`` Specifies whether an existing output model file should be overwritten. diff --git a/doc/source/users/reference_manual/cstsdist.rst b/doc/source/users/reference_manual/cstsdist.rst index 90d37bd..c3b7db8 100644 --- a/doc/source/users/reference_manual/cstsdist.rst +++ b/doc/source/users/reference_manual/cstsdist.rst @@ -117,15 +117,15 @@ Standard parameters ``(chatter = 2) [integer]`` Verbosity of the executable: - chatter = 0: no information will be logged + ``chatter = 0``: no information will be logged - chatter = 1: only errors will be logged + ``chatter = 1``: only errors will be logged - chatter = 2: errors and actions will be logged + ``chatter = 2``: errors and actions will be logged - chatter = 3: report about the task execution + ``chatter = 3``: report about the task execution - chatter = 4: detailed report about the task execution + ``chatter = 4``: detailed report about the task execution ``(clobber = yes) [boolean]`` Specifies whether an existing output file should be overwritten. diff --git a/doc/source/users/reference_manual/cstsmapmerge.rst b/doc/source/users/reference_manual/cstsmapmerge.rst index 6b2256d..6b91c43 100644 --- a/doc/source/users/reference_manual/cstsmapmerge.rst +++ b/doc/source/users/reference_manual/cstsmapmerge.rst @@ -44,15 +44,15 @@ Standard parameters ``(chatter = 2) [integer]`` Verbosity of the executable: - chatter = 0: no information will be logged + ``chatter = 0``: no information will be logged - chatter = 1: only errors will be logged + ``chatter = 1``: only errors will be logged - chatter = 2: errors and actions will be logged + ``chatter = 2``: errors and actions will be logged - chatter = 3: report about the task execution + ``chatter = 3``: report about the task execution - chatter = 4: detailed report about the task execution + ``chatter = 4``: detailed report about the task execution ``(clobber = yes) [boolean]`` Specifies whether an existing output TS map file should be overwritten. diff --git a/doc/source/users/reference_manual/cstsmapsplit.rst b/doc/source/users/reference_manual/cstsmapsplit.rst index 0660311..b58c342 100644 --- a/doc/source/users/reference_manual/cstsmapsplit.rst +++ b/doc/source/users/reference_manual/cstsmapsplit.rst @@ -95,15 +95,15 @@ Standard parameters ``(chatter = 2) [integer]`` Verbosity of the executable: - chatter = 0: no information will be logged + ``chatter = 0``: no information will be logged - chatter = 1: only errors will be logged + ``chatter = 1``: only errors will be logged - chatter = 2: errors and actions will be logged + ``chatter = 2``: errors and actions will be logged - chatter = 3: report about the task execution + ``chatter = 3``: report about the task execution - chatter = 4: detailed report about the task execution + ``chatter = 4``: detailed report about the task execution ``(clobber = yes) [boolean]`` Specifies whether an existing output TS map file should be overwritten. diff --git a/doc/source/users/reference_manual/csviscube.rst b/doc/source/users/reference_manual/csviscube.rst index 9353145..7febc74 100644 --- a/doc/source/users/reference_manual/csviscube.rst +++ b/doc/source/users/reference_manual/csviscube.rst @@ -63,15 +63,15 @@ Standard parameters ``(chatter = 2) [integer]`` Verbosity of the executable: - chatter = 0: no information will be logged + ``chatter = 0``: no information will be logged - chatter = 1: only errors will be logged + ``chatter = 1``: only errors will be logged - chatter = 2: errors and actions will be logged + ``chatter = 2``: errors and actions will be logged - chatter = 3: report about the task execution + ``chatter = 3``: report about the task execution - chatter = 4: detailed report about the task execution + ``chatter = 4``: detailed report about the task execution ``(clobber = yes) [boolean]`` Specifies whether an existing visibility cube file should be overwritten. diff --git a/doc/source/users/reference_manual/ctbin.rst b/doc/source/users/reference_manual/ctbin.rst index 7314bdb..f0d2a1a 100644 --- a/doc/source/users/reference_manual/ctbin.rst +++ b/doc/source/users/reference_manual/ctbin.rst @@ -83,15 +83,15 @@ Standard parameters ``(chatter = 2) [integer]`` Verbosity of the executable: - chatter = 0: no information will be logged + ``chatter = 0``: no information will be logged - chatter = 1: only errors will be logged + ``chatter = 1``: only errors will be logged - chatter = 2: errors and actions will be logged + ``chatter = 2``: errors and actions will be logged - chatter = 3: report about the task execution + ``chatter = 3``: report about the task execution - chatter = 4: detailed report about the task execution + ``chatter = 4``: detailed report about the task execution ``(clobber = yes) [boolean]`` Specifies whether an existing output counts cube file should be overwritten. diff --git a/doc/source/users/reference_manual/ctbkgcube.rst b/doc/source/users/reference_manual/ctbkgcube.rst index dc9e34a..1e992ed 100644 --- a/doc/source/users/reference_manual/ctbkgcube.rst +++ b/doc/source/users/reference_manual/ctbkgcube.rst @@ -123,15 +123,15 @@ Standard parameters ``(chatter = 2) [integer]`` Verbosity of the executable: - chatter = 0: no information will be logged + ``chatter = 0``: no information will be logged - chatter = 1: only errors will be logged + ``chatter = 1``: only errors will be logged - chatter = 2: errors and actions will be logged + ``chatter = 2``: errors and actions will be logged - chatter = 3: report about the task execution + ``chatter = 3``: report about the task execution - chatter = 4: detailed report about the task execution + ``chatter = 4``: detailed report about the task execution ``(clobber = yes) [boolean]`` Specifies whether an existing output background cube file should be overwritten. diff --git a/doc/source/users/reference_manual/ctbutterfly.rst b/doc/source/users/reference_manual/ctbutterfly.rst index b15314d..25db8cd 100644 --- a/doc/source/users/reference_manual/ctbutterfly.rst +++ b/doc/source/users/reference_manual/ctbutterfly.rst @@ -107,15 +107,15 @@ Standard parameters ``(chatter = 2) [integer]`` Verbosity of the executable: - chatter = 0: no information will be logged + ``chatter = 0``: no information will be logged - chatter = 1: only errors will be logged + ``chatter = 1``: only errors will be logged - chatter = 2: errors and actions will be logged + ``chatter = 2``: errors and actions will be logged - chatter = 3: report about the task execution + ``chatter = 3``: report about the task execution - chatter = 4: detailed report about the task execution + ``chatter = 4``: detailed report about the task execution ``(clobber = yes) [boolean]`` Specifies whether an existing output file should be overwritten. diff --git a/doc/source/users/reference_manual/ctcubemask.rst b/doc/source/users/reference_manual/ctcubemask.rst index 59fddd8..5e5c8f8 100644 --- a/doc/source/users/reference_manual/ctcubemask.rst +++ b/doc/source/users/reference_manual/ctcubemask.rst @@ -74,15 +74,15 @@ Standard parameters ``(chatter = 2) [integer]`` Verbosity of the executable: - chatter = 0: no information will be logged + ``chatter = 0``: no information will be logged - chatter = 1: only errors will be logged + ``chatter = 1``: only errors will be logged - chatter = 2: errors and actions will be logged + ``chatter = 2``: errors and actions will be logged - chatter = 3: report about the task execution + ``chatter = 3``: report about the task execution - chatter = 4: detailed report about the task execution + ``chatter = 4``: detailed report about the task execution ``(clobber = yes) [boolean]`` Specifies whether an existing output counts cube file should be overwritten. diff --git a/doc/source/users/reference_manual/ctedispcube.rst b/doc/source/users/reference_manual/ctedispcube.rst index 02f56c8..4866089 100644 --- a/doc/source/users/reference_manual/ctedispcube.rst +++ b/doc/source/users/reference_manual/ctedispcube.rst @@ -109,15 +109,15 @@ Standard parameters ``(chatter = 2) [integer]`` Verbosity of the executable: - chatter = 0: no information will be logged + ``chatter = 0``: no information will be logged - chatter = 1: only errors will be logged + ``chatter = 1``: only errors will be logged - chatter = 2: errors and actions will be logged + ``chatter = 2``: errors and actions will be logged - chatter = 3: report about the task execution + ``chatter = 3``: report about the task execution - chatter = 4: detailed report about the task execution + ``chatter = 4``: detailed report about the task execution ``(clobber = yes) [boolean]`` Specifies whether an existing output energy dispersion cube file should be overwritten. diff --git a/doc/source/users/reference_manual/cterror.rst b/doc/source/users/reference_manual/cterror.rst index ac1d520..a654bc5 100644 --- a/doc/source/users/reference_manual/cterror.rst +++ b/doc/source/users/reference_manual/cterror.rst @@ -74,15 +74,15 @@ Standard parameters ``(chatter = 2) [integer]`` Verbosity of the executable: - chatter = 0: no information will be logged + ``chatter = 0``: no information will be logged - chatter = 1: only errors will be logged + ``chatter = 1``: only errors will be logged - chatter = 2: errors and actions will be logged + ``chatter = 2``: errors and actions will be logged - chatter = 3: report about the task execution + ``chatter = 3``: report about the task execution - chatter = 4: detailed report about the task execution + ``chatter = 4``: detailed report about the task execution ``(clobber = yes) [boolean]`` Specifies whether an existing output file should be overwritten. diff --git a/doc/source/users/reference_manual/ctexpcube.rst b/doc/source/users/reference_manual/ctexpcube.rst index cbabc3d..9241397 100644 --- a/doc/source/users/reference_manual/ctexpcube.rst +++ b/doc/source/users/reference_manual/ctexpcube.rst @@ -113,15 +113,15 @@ Standard parameters ``(chatter = 2) [integer]`` Verbosity of the executable: - chatter = 0: no information will be logged + ``chatter = 0``: no information will be logged - chatter = 1: only errors will be logged + ``chatter = 1``: only errors will be logged - chatter = 2: errors and actions will be logged + ``chatter = 2``: errors and actions will be logged - chatter = 3: report about the task execution + ``chatter = 3``: report about the task execution - chatter = 4: detailed report about the task execution + ``chatter = 4``: detailed report about the task execution ``(clobber = yes) [boolean]`` Specifies whether an existing output exposure cube file should be overwritten. diff --git a/doc/source/users/reference_manual/ctlike.rst b/doc/source/users/reference_manual/ctlike.rst index dcdcd4e..1f8e251 100644 --- a/doc/source/users/reference_manual/ctlike.rst +++ b/doc/source/users/reference_manual/ctlike.rst @@ -106,15 +106,15 @@ Standard parameters ``(chatter = 2) [integer]`` Verbosity of the executable: - chatter = 0: no information will be logged + ``chatter = 0``: no information will be logged - chatter = 1: only errors will be logged + ``chatter = 1``: only errors will be logged - chatter = 2: errors and actions will be logged + ``chatter = 2``: errors and actions will be logged - chatter = 3: report about the task execution + ``chatter = 3``: report about the task execution - chatter = 4: detailed report about the task execution + ``chatter = 4``: detailed report about the task execution ``(clobber = yes) [boolean]`` Specifies whether an existing output model file should be overwritten. diff --git a/doc/source/users/reference_manual/ctmapcube.rst b/doc/source/users/reference_manual/ctmapcube.rst index 5ef17ec..e94f81e 100644 --- a/doc/source/users/reference_manual/ctmapcube.rst +++ b/doc/source/users/reference_manual/ctmapcube.rst @@ -79,15 +79,15 @@ Standard parameters ``(chatter = 2) [integer]`` Verbosity of the executable: - chatter = 0: no information will be logged + ``chatter = 0``: no information will be logged - chatter = 1: only errors will be logged + ``chatter = 1``: only errors will be logged - chatter = 2: errors and actions will be logged + ``chatter = 2``: errors and actions will be logged - chatter = 3: report about the task execution + ``chatter = 3``: report about the task execution - chatter = 4: detailed report about the task execution + ``chatter = 4``: detailed report about the task execution ``(clobber = yes) [boolean]`` Specifies whether an existing output counts cube file should be overwritten. diff --git a/doc/source/users/reference_manual/ctmodel.rst b/doc/source/users/reference_manual/ctmodel.rst index bdf3e76..3301746 100644 --- a/doc/source/users/reference_manual/ctmodel.rst +++ b/doc/source/users/reference_manual/ctmodel.rst @@ -143,15 +143,15 @@ Standard parameters ``(chatter = 2) [integer]`` Verbosity of the executable: - chatter = 0: no information will be logged + ``chatter = 0``: no information will be logged - chatter = 1: only errors will be logged + ``chatter = 1``: only errors will be logged - chatter = 2: errors and actions will be logged + ``chatter = 2``: errors and actions will be logged - chatter = 3: report about the task execution + ``chatter = 3``: report about the task execution - chatter = 4: detailed report about the task execution + ``chatter = 4``: detailed report about the task execution ``(clobber = yes) [boolean]`` Specifies whether an existing output model cube file should be overwritten. diff --git a/doc/source/users/reference_manual/ctobssim.rst b/doc/source/users/reference_manual/ctobssim.rst index 75b6d3d..5135dca 100644 --- a/doc/source/users/reference_manual/ctobssim.rst +++ b/doc/source/users/reference_manual/ctobssim.rst @@ -114,15 +114,15 @@ Standard parameters ``(chatter = 2) [integer]`` Verbosity of the executable: - chatter = 0: no information will be logged + ``chatter = 0``: no information will be logged - chatter = 1: only errors will be logged + ``chatter = 1``: only errors will be logged - chatter = 2: errors and actions will be logged + ``chatter = 2``: errors and actions will be logged - chatter = 3: report about the task execution + ``chatter = 3``: report about the task execution - chatter = 4: detailed report about the task execution + ``chatter = 4``: detailed report about the task execution ``(clobber = yes) [boolean]`` Specifies whether existing files should be overwritten. diff --git a/doc/source/users/reference_manual/ctphase.rst b/doc/source/users/reference_manual/ctphase.rst index 9d97668..6d712c3 100644 --- a/doc/source/users/reference_manual/ctphase.rst +++ b/doc/source/users/reference_manual/ctphase.rst @@ -63,15 +63,15 @@ Standard parameters ``(chatter = 2) [integer]`` Verbosity of the executable: - chatter = 0: no information will be logged + ``chatter = 0``: no information will be logged - chatter = 1: only errors will be logged + ``chatter = 1``: only errors will be logged - chatter = 2: errors and actions will be logged + ``chatter = 2``: errors and actions will be logged - chatter = 3: report about the task execution + ``chatter = 3``: report about the task execution - chatter = 4: detailed report about the task execution + ``chatter = 4``: detailed report about the task execution ``(clobber = yes) [boolean]`` Specifies whether existing output files should be overwritten. diff --git a/doc/source/users/reference_manual/ctprob.rst b/doc/source/users/reference_manual/ctprob.rst index e611607..67c0455 100644 --- a/doc/source/users/reference_manual/ctprob.rst +++ b/doc/source/users/reference_manual/ctprob.rst @@ -50,15 +50,15 @@ Standard parameters ``(chatter = 2) [integer]`` Verbosity of the executable: - chatter = 0: no information will be logged + ``chatter = 0``: no information will be logged - chatter = 1: only errors will be logged + ``chatter = 1``: only errors will be logged - chatter = 2: errors and actions will be logged + ``chatter = 2``: errors and actions will be logged - chatter = 3: report about the task execution + ``chatter = 3``: report about the task execution - chatter = 4: detailed report about the task execution + ``chatter = 4``: detailed report about the task execution ``(clobber = yes) [boolean]`` Specifies whether existing output files should be overwritten. diff --git a/doc/source/users/reference_manual/ctpsfcube.rst b/doc/source/users/reference_manual/ctpsfcube.rst index e3da02e..59c3464 100644 --- a/doc/source/users/reference_manual/ctpsfcube.rst +++ b/doc/source/users/reference_manual/ctpsfcube.rst @@ -109,15 +109,15 @@ Standard parameters ``(chatter = 2) [integer]`` Verbosity of the executable: - chatter = 0: no information will be logged + ``chatter = 0``: no information will be logged - chatter = 1: only errors will be logged + ``chatter = 1``: only errors will be logged - chatter = 2: errors and actions will be logged + ``chatter = 2``: errors and actions will be logged - chatter = 3: report about the task execution + ``chatter = 3``: report about the task execution - chatter = 4: detailed report about the task execution + ``chatter = 4``: detailed report about the task execution ``(clobber = yes) [boolean]`` Specifies whether an existing output point spread function cube file should be overwritten. diff --git a/doc/source/users/reference_manual/ctselect.rst b/doc/source/users/reference_manual/ctselect.rst index f9d94ae..82e0334 100644 --- a/doc/source/users/reference_manual/ctselect.rst +++ b/doc/source/users/reference_manual/ctselect.rst @@ -109,15 +109,15 @@ Standard parameters ``(chatter = 2) [integer]`` Verbosity of the executable: - chatter = 0: no information will be logged + ``chatter = 0``: no information will be logged - chatter = 1: only errors will be logged + ``chatter = 1``: only errors will be logged - chatter = 2: errors and actions will be logged + ``chatter = 2``: errors and actions will be logged - chatter = 3: report about the task execution + ``chatter = 3``: report about the task execution - chatter = 4: detailed report about the task execution + ``chatter = 4``: detailed report about the task execution ``(clobber = yes) [boolean]`` Specifies whether existing output files should be overwritten. diff --git a/doc/source/users/reference_manual/ctskymap.rst b/doc/source/users/reference_manual/ctskymap.rst index 0c90583..077332c 100644 --- a/doc/source/users/reference_manual/ctskymap.rst +++ b/doc/source/users/reference_manual/ctskymap.rst @@ -86,15 +86,15 @@ Standard parameters ``(chatter = 2) [integer]`` Verbosity of the executable: - chatter = 0: no information will be logged + ``chatter = 0``: no information will be logged - chatter = 1: only errors will be logged + ``chatter = 1``: only errors will be logged - chatter = 2: errors and actions will be logged + ``chatter = 2``: errors and actions will be logged - chatter = 3: report about the task execution + ``chatter = 3``: report about the task execution - chatter = 4: detailed report about the task execution + ``chatter = 4``: detailed report about the task execution ``(clobber = yes) [boolean]`` Specifies whether an existing output sky map file should be overwritten. diff --git a/doc/source/users/reference_manual/cttsmap.rst b/doc/source/users/reference_manual/cttsmap.rst index 4a74e4b..6af414d 100644 --- a/doc/source/users/reference_manual/cttsmap.rst +++ b/doc/source/users/reference_manual/cttsmap.rst @@ -105,15 +105,15 @@ Standard parameters ``(chatter = 2) [integer]`` Verbosity of the executable: - chatter = 0: no information will be logged + ``chatter = 0``: no information will be logged - chatter = 1: only errors will be logged + ``chatter = 1``: only errors will be logged - chatter = 2: errors and actions will be logged + ``chatter = 2``: errors and actions will be logged - chatter = 3: report about the task execution + ``chatter = 3``: report about the task execution - chatter = 4: detailed report about the task execution + ``chatter = 4``: detailed report about the task execution ``(clobber = yes) [boolean]`` Specifies whether an existing output TS map file should be overwritten. diff --git a/doc/source/users/reference_manual/ctulimit.rst b/doc/source/users/reference_manual/ctulimit.rst index 4ef7f43..2be65c6 100644 --- a/doc/source/users/reference_manual/ctulimit.rst +++ b/doc/source/users/reference_manual/ctulimit.rst @@ -86,15 +86,15 @@ Standard parameters ``(chatter = 2) [integer]`` Verbosity of the executable: - chatter = 0: no information will be logged + ``chatter = 0``: no information will be logged - chatter = 1: only errors will be logged + ``chatter = 1``: only errors will be logged - chatter = 2: errors and actions will be logged + ``chatter = 2``: errors and actions will be logged - chatter = 3: report about the task execution + ``chatter = 3``: report about the task execution - chatter = 4: detailed report about the task execution + ``chatter = 4``: detailed report about the task execution ``(clobber = yes) [boolean]`` Specifies whether an existing output file should be overwritten. -- libgit2 0.21.4