Johan Bregeon / ctools

Commit 03b0aa5ac5a16707ac131b95fafb16187b249c20

Authored by Jürgen Knödlseder
1 parent ecd46cb4

Add more example scripts to unit test

Inline Side-by-side
Showing 12 changed files with 463 additions and 137 deletions
.gitignore
  View file @03b0aa5
@@ -81,6 +81,7 @@ test/*.xml @@ -81,6 +81,7 @@ test/*.xml
81 test/*.reg 81 test/*.reg
82 test/*.trs 82 test/*.trs
83 test/*.txt 83 test/*.txt
  84 +test/*.eps
84 test/test_cscripts.sh 85 test/test_cscripts.sh
85 test/test_examples.sh 86 test/test_examples.sh
86 test/reports/*.xml 87 test/reports/*.xml
examples/make_spectrum.py
  View file @03b0aa5
@@ -94,14 +94,14 @@ def make_spectrum(): @@ -94,14 +94,14 @@ def make_spectrum():
94 # ============= # 94 # ============= #
95 def plot_spectrum(spectrum, file=False): 95 def plot_spectrum(spectrum, file=False):
96 """ 96 """
97 - Plot spectrum. 97 + Plot spectrum
98 98
99 Parameters 99 Parameters
100 ---------- 100 ----------
101 spectrum : `~gammalib.GFits` 101 spectrum : `~gammalib.GFits`
102 Spectrum FITS file 102 Spectrum FITS file
103 - type : str, optional  
104 - Plot type (blank means display on screen) 103 + file : bool, optional
  104 + Plot into a file
105 """ 105 """
106 # Extract columns from spectrum file 106 # Extract columns from spectrum file
107 table = spectrum.table(1) 107 table = spectrum.table(1)
examples/show_butterfly.py
  View file @03b0aa5
1 #! /usr/bin/env python 1 #! /usr/bin/env python
2 # ========================================================================== 2 # ==========================================================================
3 -# This script shows how to plot a butterfly created with ctbutterfly 3 +# Shows butterfly diagram created with ctbutterfly
4 # 4 #
5 -# Copyright (C) 2014-2015 Michael Mayer 5 +# Copyright (C) 2014-2016 Michael Mayer
6 # 6 #
7 # This program is free software: you can redistribute it and/or modify 7 # This program is free software: you can redistribute it and/or modify
8 # it under the terms of the GNU General Public License as published by 8 # it under the terms of the GNU General Public License as published by
@@ -18,12 +18,12 @@ @@ -18,12 +18,12 @@
18 # along with this program. If not, see <http://www.gnu.org/licenses/>. 18 # along with this program. If not, see <http://www.gnu.org/licenses/>.
19 # 19 #
20 # ========================================================================== 20 # ==========================================================================
21 -import gammalib  
22 import sys 21 import sys
  22 +import gammalib
23 try: 23 try:
24 import matplotlib.pyplot as plt 24 import matplotlib.pyplot as plt
25 except: 25 except:
26 - sys.exit("This script needs matplotlib") 26 + sys.exit('This script needs the "matplotlib" module')
27 27
28 28
29 # ============ # 29 # ============ #
@@ -32,8 +32,13 @@ except: @@ -32,8 +32,13 @@ except:
32 if __name__ == "__main__": 32 if __name__ == "__main__":
33 33
34 # Check for given butterfly file 34 # Check for given butterfly file
35 - if not len(sys.argv) == 2:  
36 - sys.exit("Usage: show_butterfly.py butterfly.txt") 35 + if len(sys.argv) < 2:
  36 + sys.exit('Usage: show_butterfly.py butterfly.txt [file]')
  37 +
  38 + # Check if plotting in file is requested
  39 + plotfile = ''
  40 + if len(sys.argv) == 3:
  41 + plotfile = sys.argv[2]
37 42
38 # Read given butterfly file 43 # Read given butterfly file
39 filename = sys.argv[1] 44 filename = sys.argv[1]
@@ -74,6 +79,11 @@ if __name__ == &quot;__main__&quot;: @@ -74,6 +79,11 @@ if __name__ == &quot;__main__&quot;:
74 plt.grid() 79 plt.grid()
75 plt.plot(line_x,line_y,color='black',ls='-') 80 plt.plot(line_x,line_y,color='black',ls='-')
76 plt.fill(butterfly_x,butterfly_y,color='green',alpha=0.5) 81 plt.fill(butterfly_x,butterfly_y,color='green',alpha=0.5)
77 - plt.xlabel("Energy (MeV)")  
78 - plt.ylabel(r"E dN/dE (MeV$^{-1}$ s$^{-1}$ cm$^{-2}$)")  
79 - plt.show() 82 + plt.xlabel('Energy (MeV)')
  83 + plt.ylabel('E dN/dE (MeV$^{-1}$ s$^{-1}$ cm$^{-2}$)')
  84 +
  85 + # Show spectrum or save it into file
  86 + if len(plotfile) > 0:
  87 + plt.savefig(plotfile)
  88 + else:
  89 + plt.show()
examples/show_model.py
  View file @03b0aa5
1 #! /usr/bin/env python 1 #! /usr/bin/env python
2 # ========================================================================== 2 # ==========================================================================
3 -# This script shows a model 3 +# Shows the photon spectrum of a model
4 # 4 #
5 -# Copyright (C) 2015 Juergen Knoedlseder 5 +# Copyright (C) 2015-2016 Juergen Knoedlseder
6 # 6 #
7 # This program is free software: you can redistribute it and/or modify 7 # This program is free software: you can redistribute it and/or modify
8 # it under the terms of the GNU General Public License as published by 8 # it under the terms of the GNU General Public License as published by
@@ -18,27 +18,41 @@ @@ -18,27 +18,41 @@
18 # along with this program. If not, see <http://www.gnu.org/licenses/>. 18 # along with this program. If not, see <http://www.gnu.org/licenses/>.
19 # 19 #
20 # ========================================================================== 20 # ==========================================================================
21 -import gammalib  
22 import sys 21 import sys
23 import math 22 import math
  23 +import gammalib
24 try: 24 try:
25 import matplotlib.pyplot as plt 25 import matplotlib.pyplot as plt
26 except: 26 except:
27 - sys.exit("This script needs matplotlib") 27 + sys.exit('This script needs the "matplotlib" module')
28 28
29 29
30 # ======================= # 30 # ======================= #
31 # Plot spectral component # 31 # Plot spectral component #
32 # ======================= # 32 # ======================= #
33 -def plot_spectrum(model, emin=0.01, emax=100.0, enumbins=100): 33 +def plot_spectrum(model, emin=0.01, emax=100.0, enumbins=100, plotfile=''):
34 """ 34 """
  35 + Plot spectral model component
  36 +
  37 + Parameters
  38 + ----------
  39 + model : `~gammalib.GModel`
  40 + Model
  41 + emin : float, optional
  42 + Minimum energy (TeV)
  43 + emax : float, optional
  44 + Maximum energy (TeV)
  45 + enumbins : integer, optional
  46 + Number of energy bins
  47 + plotfile : str, optional
  48 + Name of plot file
35 """ 49 """
36 # Get spectral component 50 # Get spectral component
37 spectrum = model.spectral() 51 spectrum = model.spectral()
38 52
39 # Setup energy axis 53 # Setup energy axis
40 - e_min = gammalib.GEnergy(emin, "TeV")  
41 - e_max = gammalib.GEnergy(emax, "TeV") 54 + e_min = gammalib.GEnergy(emin, 'TeV')
  55 + e_max = gammalib.GEnergy(emax, 'TeV')
42 ebounds = gammalib.GEbounds(enumbins, e_min, e_max) 56 ebounds = gammalib.GEbounds(enumbins, e_min, e_max)
43 57
44 # Setup model plot 58 # Setup model plot
@@ -48,7 +62,7 @@ def plot_spectrum(model, emin=0.01, emax=100.0, enumbins=100): @@ -48,7 +62,7 @@ def plot_spectrum(model, emin=0.01, emax=100.0, enumbins=100):
48 max = 0.0 62 max = 0.0
49 for i in range(enumbins): 63 for i in range(enumbins):
50 energy = ebounds.elogmean(i) 64 energy = ebounds.elogmean(i)
51 - value = spectrum.eval(energy, gammalib.GTime()) 65 + value = spectrum.eval(energy)
52 if value > max: 66 if value > max:
53 max = value 67 max = value
54 if value < min: 68 if value < min:
@@ -57,22 +71,27 @@ def plot_spectrum(model, emin=0.01, emax=100.0, enumbins=100): @@ -57,22 +71,27 @@ def plot_spectrum(model, emin=0.01, emax=100.0, enumbins=100):
57 y.append(value) 71 y.append(value)
58 72
59 # Set minimum and maximum 73 # Set minimum and maximum
60 - max = math.pow(10.0, math.log10(max)+1)  
61 - if min < 0.0001*max:  
62 - min = 0.0001*max  
63 - min = math.pow(10.0, math.log10(min)-1) 74 + #max = math.pow(10.0, math.log10(max)+1)
  75 + #if min < 0.0001*max:
  76 + # min = 0.0001*max
  77 + #min = math.pow(10.0, math.log10(min)-1)
64 78
65 79
66 # Show spectrum 80 # Show spectrum
67 plt.figure() 81 plt.figure()
68 - plt.title(model.name()+" ("+spectrum.type()+")") 82 + plt.title(model.name()+' ('+spectrum.type()+')')
69 plt.loglog() 83 plt.loglog()
70 plt.grid() 84 plt.grid()
71 plt.loglog(x, y, color='red') 85 plt.loglog(x, y, color='red')
72 - plt.xlabel("Energy [TeV]")  
73 - plt.ylabel(r"dN/dE [ph s$^{-1}$ cm$^{-2}$ MeV$^{-1}$]")  
74 - plt.ylim([min,max])  
75 - plt.show() 86 + plt.xlabel('Energy (TeV)')
  87 + plt.ylabel(r'dN/dE (ph s$^{-1}$ cm$^{-2}$ MeV$^{-1}$)')
  88 + #plt.ylim([min,max])
  89 +
  90 + # Show spectrum or save it into file
  91 + if len(plotfile) > 0:
  92 + plt.savefig(plotfile)
  93 + else:
  94 + plt.show()
76 95
77 # Return 96 # Return
78 return 97 return
@@ -85,20 +104,24 @@ if __name__ == &quot;__main__&quot;: @@ -85,20 +104,24 @@ if __name__ == &quot;__main__&quot;:
85 104
86 # Check for model filename 105 # Check for model filename
87 if len(sys.argv) < 2: 106 if len(sys.argv) < 2:
88 - sys.exit("Usage: show_model.py model.xml [index]") 107 + sys.exit('Usage: show_model.py model.xml [name] [file]')
89 108
90 # Get optional model index 109 # Get optional model index
91 - if len(sys.argv) == 3:  
92 - index = int(sys.argv[2]) 110 + if len(sys.argv) >= 3:
  111 + name = sys.argv[2]
  112 + else:
  113 + name = 0
  114 + if len(sys.argv) == 4:
  115 + plotfile = sys.argv[3]
93 else: 116 else:
94 - index = 0 117 + plotfile = ''
95 118
96 # Read models XML file 119 # Read models XML file
97 filename = sys.argv[1] 120 filename = sys.argv[1]
98 models = gammalib.GModels(filename) 121 models = gammalib.GModels(filename)
99 122
100 # Extract relevant model 123 # Extract relevant model
101 - model = models[index] 124 + model = models[name]
102 125
103 # Plot spectrum 126 # Plot spectrum
104 - plot_spectrum(model) 127 + plot_spectrum(model, plotfile=plotfile)
examples/show_pha.py
  View file @03b0aa5
1 #! /usr/bin/env python 1 #! /usr/bin/env python
2 # ========================================================================== 2 # ==========================================================================
3 -# This script displays a spectrum in PHA format. 3 +# Show a spectrum in PHA format.
4 # 4 #
5 -# Required 3rd party modules:  
6 -# - matplotlib  
7 -# - numpy  
8 -#  
9 -# Copyright (C) 2013 Juergen Knoedlseder 5 +# Copyright (C) 2013-2016 Juergen Knoedlseder
10 # 6 #
11 # This program is free software: you can redistribute it and/or modify 7 # This program is free software: you can redistribute it and/or modify
12 # it under the terms of the GNU General Public License as published by 8 # it under the terms of the GNU General Public License as published by
@@ -25,17 +21,29 @@ @@ -25,17 +21,29 @@
25 import sys 21 import sys
26 import math 22 import math
27 import gammalib 23 import gammalib
  24 +try:
  25 + import matplotlib.pyplot as plt
  26 +except:
  27 + sys.exit('This script needs the "matplotlib" module')
28 28
29 29
30 # ================= # 30 # ================= #
31 # Show PHA spectrum # 31 # Show PHA spectrum #
32 # ================= # 32 # ================= #
33 -def show_pha(pha): 33 +def show_pha(pha, plotfile=''):
34 """ 34 """
  35 + Show PHA spectrum
  36 +
  37 + Parameters
  38 + ----------
  39 + spectrum : `~gammalib.GPha`
  40 + PHA file
  41 + plotfile : str, optional
  42 + Plot file name
35 """ 43 """
36 # Create figure 44 # Create figure
37 plt.figure(1) 45 plt.figure(1)
38 - plt.title("PHA spectrum (" + pha.filename() + ")") 46 + plt.title('PHA spectrum (' + pha.filename() + ')')
39 47
40 # Generate energy vector 48 # Generate energy vector
41 energy = [] 49 energy = []
@@ -63,16 +71,19 @@ def show_pha(pha): @@ -63,16 +71,19 @@ def show_pha(pha):
63 71
64 # Set axes 72 # Set axes
65 if channels: 73 if channels:
66 - plt.xlabel("Channels") 74 + plt.xlabel('Channels')
67 else: 75 else:
68 - plt.xlabel("Energy (TeV)")  
69 - plt.ylabel("Counts") 76 + plt.xlabel('Energy (TeV)')
  77 + plt.ylabel('Counts')
70 78
71 - # Show plot  
72 - plt.show() 79 + # Show spectrum or save it into file
  80 + if len(plotfile) > 0:
  81 + plt.savefig(plotfile)
  82 + else:
  83 + plt.show()
73 84
74 # Return 85 # Return
75 - #return 86 + return
76 87
77 88
78 # ======================== # 89 # ======================== #
@@ -81,27 +92,21 @@ def show_pha(pha): @@ -81,27 +92,21 @@ def show_pha(pha):
81 if __name__ == '__main__': 92 if __name__ == '__main__':
82 93
83 # Print usage information 94 # Print usage information
84 - usage = "Usage: show_pha filename" \  
85 - " [-n bins] [-c column] [-t title] [-p plot]" 95 + usage = 'Usage: show_pha filename [file]'
86 if len(sys.argv) < 2: 96 if len(sys.argv) < 2:
87 print(usage) 97 print(usage)
88 sys.exit() 98 sys.exit()
89 99
  100 + # Check if plotting in file is requested
  101 + plotfile = ''
  102 + if len(sys.argv) == 3:
  103 + plotfile = sys.argv[2]
  104 +
90 # Extract parameters 105 # Extract parameters
91 filename = sys.argv[1] 106 filename = sys.argv[1]
92 107
93 # Load PHA spectrum 108 # Load PHA spectrum
94 pha = gammalib.GPha(filename) 109 pha = gammalib.GPha(filename)
95 - #print(pha)  
96 -  
97 - # Try importing matplotlib  
98 - try:  
99 - import matplotlib.pyplot as plt  
100 - has_matplotlib = True  
101 - except ImportError:  
102 - print("Matplotlib is not (correctly) installed on your system.")  
103 - has_matplotlib = False  
104 110
105 # Show PHA spectrum 111 # Show PHA spectrum
106 - if has_matplotlib:  
107 - show_pha(pha) 112 + show_pha(pha, plotfile=plotfile)
examples/show_pull_evolution.py
  View file @03b0aa5
1 #! /usr/bin/env python 1 #! /usr/bin/env python
2 # ========================================================================== 2 # ==========================================================================
3 -# This script displays the evolution of the pull distributions as function  
4 -# of the number of samples. The pull distributions are generated using the  
5 -# cspull script. The pull is defined by 3 +# Shows the evolution of the mean and rms pull
6 # 4 #
7 -# (fitted value - simulated value) / estimated error  
8 -#  
9 -# and the pull histogram allows to assess possible biases in the fit  
10 -# parameters and errors.  
11 -#  
12 -# Required 3rd party modules:  
13 -# - matplotlib  
14 -# - numpy  
15 -#  
16 -# Copyright (C) 2015 Juergen Knoedlseder 5 +# Copyright (C) 2015-2016 Juergen Knoedlseder
17 # 6 #
18 # This program is free software: you can redistribute it and/or modify 7 # This program is free software: you can redistribute it and/or modify
19 # it under the terms of the GNU General Public License as published by 8 # it under the terms of the GNU General Public License as published by
@@ -29,10 +18,16 @@ @@ -29,10 +18,16 @@
29 # along with this program. If not, see <http://www.gnu.org/licenses/>. 18 # along with this program. If not, see <http://www.gnu.org/licenses/>.
30 # 19 #
31 # ========================================================================== 20 # ==========================================================================
32 -import matplotlib.pyplot as plt  
33 -import numpy as np  
34 import sys 21 import sys
35 import csv 22 import csv
  23 +try:
  24 + import matplotlib.pyplot as plt
  25 +except:
  26 + sys.exit('This script needs the "matplotlib" module')
  27 +try:
  28 + import numpy as np
  29 +except:
  30 + sys.exit('This script needs the "numpy" module')
36 31
37 32
38 # ====================== # 33 # ====================== #
@@ -40,7 +35,14 @@ import csv @@ -40,7 +35,14 @@ import csv
40 # ====================== # 35 # ====================== #
41 def read_pull(filename, parname): 36 def read_pull(filename, parname):
42 """ 37 """
43 - Read pull distribution. 38 + Read pull distribution
  39 +
  40 + Parameters
  41 + ----------
  42 + filename : str
  43 + Pull distribution ASCII file
  44 + parname : str
  45 + Parameter
44 """ 46 """
45 # Initialise list 47 # Initialise list
46 values = [] 48 values = []
@@ -58,9 +60,9 @@ def read_pull(filename, parname): @@ -58,9 +60,9 @@ def read_pull(filename, parname):
58 try: 60 try:
59 index = row.index(parname) 61 index = row.index(parname)
60 except: 62 except:
61 - sys.stdout.write('ERROR: Parameter "'+parname+'" not found in list:\n') 63 + print('ERROR: Parameter "'+parname+'" not found in list:')
62 for p in row: 64 for p in row:
63 - sys.stdout.write(' "'+p+'"\n') 65 + print(' "'+p+'"')
64 raise NameError(parname) 66 raise NameError(parname)
65 67
66 # Handle data rows 68 # Handle data rows
@@ -83,11 +85,16 @@ def read_pull(filename, parname): @@ -83,11 +85,16 @@ def read_pull(filename, parname):
83 if __name__ == '__main__': 85 if __name__ == '__main__':
84 86
85 # Print usage information 87 # Print usage information
86 - usage = "Usage: show_pull_evolution filename parname" 88 + usage = 'Usage: show_pull_evolution filename parname [file]'
87 if len(sys.argv) < 3: 89 if len(sys.argv) < 3:
88 - sys.stdout.write(usage+"\n") 90 + print(usage)
89 sys.exit() 91 sys.exit()
90 92
  93 + # Check if plotting in file is requested
  94 + plotfile = ''
  95 + if len(sys.argv) == 4:
  96 + plotfile = sys.argv[3]
  97 +
91 # Extract parameters 98 # Extract parameters
92 filename = sys.argv[1] 99 filename = sys.argv[1]
93 parname = sys.argv[2] 100 parname = sys.argv[2]
@@ -106,17 +113,20 @@ if __name__ == &#39;__main__&#39;: @@ -106,17 +113,20 @@ if __name__ == &#39;__main__&#39;:
106 rms.append(np.std(values[0:i])) 113 rms.append(np.std(values[0:i]))
107 114
108 # Plot mean and rms evolution 115 # Plot mean and rms evolution
109 - plt.semilogx(samples, mean, 'r-', label="Mean")  
110 - plt.semilogx(samples, rms, 'b-', label="Std. deviation") 116 + plt.semilogx(samples, mean, 'r-', label='Mean')
  117 + plt.semilogx(samples, rms, 'b-', label='Std. deviation')
111 118
112 # Set plot 119 # Set plot
113 - plt.xlabel("Samples")  
114 - plt.ylabel("Value") 120 + plt.xlabel('Samples')
  121 + plt.ylabel('Value')
115 plt.title(parname) 122 plt.title(parname)
116 plt.grid(True) 123 plt.grid(True)
117 124
118 # Set legend 125 # Set legend
119 - plt.legend(loc="upper left") 126 + plt.legend(loc='upper left')
120 127
121 - # Show histogram  
122 - plt.show() 128 + # Show figure
  129 + if len(plotfile) > 0:
  130 + plt.savefig(plotfile)
  131 + else:
  132 + plt.show()
examples/show_pull_histogram.py
  View file @03b0aa5
1 #! /usr/bin/env python 1 #! /usr/bin/env python
2 # ========================================================================== 2 # ==========================================================================
3 -# This script displays pull histograms that have been generated using the  
4 -# cspull script. The pull is defined by 3 +# Shows the pull histogram
5 # 4 #
6 -# (fitted value - simulated value) / estimated error  
7 -#  
8 -# and the pull histogram allows to assess possible biases in the fit  
9 -# parameters and errors.  
10 -#  
11 -# Required 3rd party modules:  
12 -# - matplotlib  
13 -# - numpy  
14 -#  
15 -# Copyright (C) 2011 Jurgen Knodlseder 5 +# Copyright (C) 2011-2016 Juergen Knoedlseder
16 # 6 #
17 # This program is free software: you can redistribute it and/or modify 7 # This program is free software: you can redistribute it and/or modify
18 # it under the terms of the GNU General Public License as published by 8 # it under the terms of the GNU General Public License as published by
@@ -28,11 +18,17 @@ @@ -28,11 +18,17 @@
28 # along with this program. If not, see <http://www.gnu.org/licenses/>. 18 # along with this program. If not, see <http://www.gnu.org/licenses/>.
29 # 19 #
30 # ========================================================================== 20 # ==========================================================================
31 -import matplotlib.mlab as mlab  
32 -import matplotlib.pyplot as plt  
33 -import numpy as np  
34 import sys 21 import sys
35 import csv 22 import csv
  23 +try:
  24 + import matplotlib.pyplot as plt
  25 + import matplotlib.mlab as mlab
  26 +except:
  27 + sys.exit('This script needs the "matplotlib" module')
  28 +try:
  29 + import numpy as np
  30 +except:
  31 + sys.exit('This script needs the "numpy" module')
36 32
37 33
38 # ====================== # 34 # ====================== #
@@ -40,7 +36,14 @@ import csv @@ -40,7 +36,14 @@ import csv
40 # ====================== # 36 # ====================== #
41 def read_pull(filename, parname): 37 def read_pull(filename, parname):
42 """ 38 """
43 - Read pull distribution. 39 + Read pull distribution
  40 +
  41 + Parameters
  42 + ----------
  43 + filename : str
  44 + Pull distribution ASCII file
  45 + parname : str
  46 + Parameter
44 """ 47 """
45 # Initialise list 48 # Initialise list
46 values = [] 49 values = []
@@ -58,9 +61,9 @@ def read_pull(filename, parname): @@ -58,9 +61,9 @@ def read_pull(filename, parname):
58 try: 61 try:
59 index = row.index(parname) 62 index = row.index(parname)
60 except: 63 except:
61 - sys.stdout.write('ERROR: Parameter "'+parname+'" not found in list:\n') 64 + print('ERROR: Parameter "'+parname+'" not found in list:')
62 for p in row: 65 for p in row:
63 - sys.stdout.write(' "'+p+'"\n') 66 + print(' "'+p+'"')
64 raise NameError(parname) 67 raise NameError(parname)
65 68
66 # Handle data rows 69 # Handle data rows
@@ -83,9 +86,9 @@ def read_pull(filename, parname): @@ -83,9 +86,9 @@ def read_pull(filename, parname):
83 if __name__ == '__main__': 86 if __name__ == '__main__':
84 87
85 # Print usage information 88 # Print usage information
86 - usage = "Usage: show_pull_histogram filename parname [bins]" 89 + usage = 'Usage: show_pull_histogram filename parname [bins] [file]'
87 if len(sys.argv) < 3: 90 if len(sys.argv) < 3:
88 - sys.stdout.write(usage+"\n") 91 + print(usage)
89 sys.exit() 92 sys.exit()
90 93
91 # Extract parameters 94 # Extract parameters
@@ -95,13 +98,17 @@ if __name__ == &#39;__main__&#39;: @@ -95,13 +98,17 @@ if __name__ == &#39;__main__&#39;:
95 nbins = int(sys.argv[3]) 98 nbins = int(sys.argv[3])
96 else: 99 else:
97 nbins = 50 100 nbins = 50
  101 + if len(sys.argv) == 5:
  102 + plotfile = sys.argv[4]
  103 + else:
  104 + plotfile = ''
98 105
99 # Read values from CSV file 106 # Read values from CSV file
100 values = read_pull(filename, parname) 107 values = read_pull(filename, parname)
101 108
102 # Create histogram 109 # Create histogram
103 n, bins, patches = plt.hist(values, nbins, range=[-4.0,4.0], 110 n, bins, patches = plt.hist(values, nbins, range=[-4.0,4.0],
104 - normed=True, facecolor='green') 111 + normed=True, facecolor='green')
105 112
106 # Create expected distribution 113 # Create expected distribution
107 y = mlab.normpdf(bins, 0.0, 1.0) 114 y = mlab.normpdf(bins, 0.0, 1.0)
@@ -116,5 +123,8 @@ if __name__ == &#39;__main__&#39;: @@ -116,5 +123,8 @@ if __name__ == &#39;__main__&#39;:
116 plt.title(name) 123 plt.title(name)
117 plt.grid(True) 124 plt.grid(True)
118 125
119 - # Show histogram  
120 - plt.show() 126 + # Show figure
  127 + if len(plotfile) > 0:
  128 + plt.savefig(plotfile)
  129 + else:
  130 + plt.show()
test/data/butterfly.txt 0 → 100644
  View file @03b0aa5
  1 +103514 7.97876e-15 7.61983e-15 8.34788e-15
  2 +110917 6.72257e-15 6.4272e-15 7.02571e-15
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test/data/pha.fits 0 → 100644
View file @03b0aa5
No preview for this file type
test/data/pull.dat 0 → 100644
  View file @03b0aa5
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  84 +104225.27879959819,14900.0,14900.00000050222,5.199590965611082e-16,-1.9135528494747858,2.615078201400422e-17,-2.4556855368707633,0.8170335145337638,0.02975944400899101,1.0386428710542701,1.615496590731249,0.0239201192227701,0.018544221167335707,1.4217032000742367,0.01304366563032804
  85 +102786.34653474073,14809.0,14808.997062384125,5.671608003596035e-16,-0.10806725632187256,2.6272524509552447e-17,-2.5099327217773117,-1.0258010259966965,0.02917985166590013,0.9698004119754605,-1.3141855751175404,0.02297969829857434,-0.014914062983158742,-1.1175505167317183,0.013345314381648704
  86 +103693.80219318194,14925.0,14925.000000354028,6.262827577806683e-16,2.0904413060784135,2.6923864170218004e-17,-2.5411901412740177,-2.2024997893381664,0.027782132634121534,0.9887409816798305,-0.4825792434259602,0.023330921239460494,-0.000780752700560303,-0.05835466951287918,0.013379438305069774
  87 +104450.08142122456,15026.0,15025.994475005335,5.564571488415918e-16,-0.5143813331337013,2.632842657003666e-17,-2.4774149392783564,0.09322806764920688,0.027728352488978595,0.9801244763987085,-0.8536014915849469,0.02328431217287018,-0.019296953745379125,-1.43996889663141,0.013400951777862312
  88 +104737.74337394757,15065.0,15064.99996910083,5.554067901763217e-16,-0.5523022868838343,2.6422504795363372e-17,-2.4843390111399652,-0.14983936941816967,0.028957750935643706,1.0003050186229425,0.013048813191263154,0.02337520037046332,-0.008653486101637216,-0.657271863832087,0.013165763784843708
  89 +104812.57801906214,15006.0,15005.99998335691,5.178722422960302e-16,-1.9922068346204702,2.6165836196370893e-17,-2.427920517426411,1.7570265877928588,0.029640691231093017,1.0336105370795834,1.4217166073837435,0.023640813439911784,0.0108890268433584,0.8436609848926396,0.012906874963222445
  90 +106339.57096486905,15207.0,15206.999997505669,5.492624962630607e-16,-0.7780861160226986,2.6651939046210067e-17,-2.445831650210193,1.190829912702277,0.028692888401057177,1.0621195059244974,2.582425705182309,0.024054711738594643,0.02255630002191606,1.7588965807729846,0.012824119546587107
  91 +103728.05730247138,14836.0,14835.999999972239,5.209387563455267e-16,-1.8911654411555279,2.5942333011593222e-17,-2.4645567717301,0.5223658413199294,0.029564008685709207,1.012433963029872,0.5286900139121922,0.02351843746369132,0.005379995631329906,0.4100847184331302,0.01311922973351953
  92 +103639.17031866539,14849.0,14848.995763098657,5.526901347779302e-16,-0.6572633079617131,2.6336271951268132e-17,-2.4790756256950353,0.03172639935343961,0.029135808783939735,1.020468619932421,0.8708978450847256,0.023502894223408958,0.013820223566015184,1.0582294652684516,0.01305976068480504
  93 +104906.65266527233,15057.0,15056.999676679454,5.898564205186925e-16,0.7409408234691087,2.6798928996413046e-17,-2.4884855686348057,-0.300606433374182,0.028228167107266427,0.9987704521192002,-0.052390350346280826,0.023468976112450243,-0.00464859897558333,-0.35058822561408415,0.013259426974311319
  94 +103900.09432355365,14941.0,14940.999999124993,5.626494348423733e-16,-0.2802725807392193,2.622648686589148e-17,-2.5374766771077253,-1.956661148119976,0.029374875237314736,1.0177793643158666,0.7655517169966314,0.023224249807207744,0.008053383365417891,0.624695729612739,0.01289168947962929
  95 +105421.80459221234,15086.0,15085.991362965473,5.516294154681729e-16,-0.6898096398915645,2.6631382731495095e-17,-2.432532234555485,1.6716428368356826,0.028395877635182285,1.0247181424780918,1.0377693753611312,0.023818531424180996,0.006247790610896622,0.47575967680589687,0.013132240741465004
  96 +104763.55636490823,14971.0,14970.992992053427,5.754182702542043e-16,0.20500866554129127,2.6429469407540822e-17,-2.471106898042058,0.3212152695157941,0.02768580077574692,1.0213216150467694,0.912626363652129,0.023362918162308007,0.01187716446399299,0.918512218279798,0.012930872586797705
  97 +104010.23755771558,14983.0,14982.986816532728,5.82399109476417e-16,0.4663708032910838,2.658637588142092e-17,-2.487410895062763,-0.26203121450146666,0.02828248946165792,0.9697278266558659,-1.3016693628373415,0.02325642302754035,-0.02063547654962738,-1.5264684883010589,0.01351844254092295
  98 +103802.99200127616,14915.0,14914.999158519993,5.98955655549965e-16,1.0774187851228139,2.687502385311054e-17,-2.492051222393842,-0.42355797140608237,0.028452356483424656,0.9793257627282156,-0.8930739375796235,0.023149524806215908,-0.00909363354268816,-0.6818341388097926,0.013337017061894227
  99 +104450.88752347854,15017.0,15016.999255893796,5.809988580730963e-16,0.41359203147894474,2.65934960926737e-17,-2.4601309159680382,0.7212149320641501,0.02754946292514427,0.9867690971578991,-0.5699875949468021,0.02321261543128109,-0.010889108810203578,-0.821966945763293,0.013247623722985307
  100 +103991.60794535361,14949.0,14948.999999199335,5.116779889999498e-16,-2.2436615470269636,2.5994121563179454e-17,-2.4490704069391716,1.0231506789081568,0.0302297537385545,0.9920210767039928,-0.34551318825890465,0.02309296306810833,-0.01362458177359732,-1.0422571545953772,0.013072188292040678
  101 +104522.21161729087,14952.0,14951.996157985375,5.778641034812695e-16,0.29445980626519813,2.670688261672947e-17,-2.463321751237089,0.6036096703921505,0.027630850831258973,1.0145116280579276,0.6221761632371783,0.02332398589882278,0.00909011274137726,0.7004224247969091,0.012978043562801382
test/test_examples.py
  View file @03b0aa5
@@ -89,16 +89,21 @@ class Test(gammalib.GPythonTestSuite): @@ -89,16 +89,21 @@ class Test(gammalib.GPythonTestSuite):
89 self.name('examples') 89 self.name('examples')
90 90
91 # Append tests 91 # Append tests
92 - self.append(self.test_generate_prod3_irfs, 'Test generate_prod3_irfs')  
93 - self.append(self.test_make_pointings, 'Test make_pointings')  
94 - self.append(self.test_make_spectrum, 'Test make_spectrum')  
95 - self.append(self.test_make_ts_distributions, 'Test make_ts_distributions')  
96 - self.append(self.test_pipeline_binned_disk, 'Test pipeline_binned_disk')  
97 - self.append(self.test_pipeline_binned_mem, 'Test pipeline_binned_mem')  
98 - self.append(self.test_pipeline_stacked_disk, 'Test pipeline_stacked_disk')  
99 - self.append(self.test_pipeline_stacked_mem, 'Test pipeline_stacked_mem')  
100 - self.append(self.test_pipeline_unbinned_disk, 'Test pipeline_unbinned_disk')  
101 - self.append(self.test_pipeline_unbinned_mem, 'Test pipeline_unbinned_mem') 92 + self.append(self.test_generate_prod3_irfs, 'Test generate_prod3_irfs.py')
  93 + self.append(self.test_make_pointings, 'Test make_pointings.py')
  94 + self.append(self.test_make_spectrum, 'Test make_spectrum.py')
  95 + self.append(self.test_make_ts_distributions, 'Test make_ts_distributions.py')
  96 + self.append(self.test_pipeline_binned_disk, 'Test pipeline_binned_disk.py')
  97 + self.append(self.test_pipeline_binned_mem, 'Test pipeline_binned_mem.py')
  98 + self.append(self.test_pipeline_stacked_disk, 'Test pipeline_stacked_disk.py')
  99 + self.append(self.test_pipeline_stacked_mem, 'Test pipeline_stacked_mem.py')
  100 + self.append(self.test_pipeline_unbinned_disk, 'Test pipeline_unbinned_disk.py')
  101 + self.append(self.test_pipeline_unbinned_mem, 'Test pipeline_unbinned_mem.py')
  102 + self.append(self.test_show_butterfly, 'Test show_butterfly.py')
  103 + self.append(self.test_show_model, 'Test show_model.py')
  104 + self.append(self.test_show_pha, 'Test show_pha.py')
  105 + self.append(self.test_show_pull_evolution, 'Test show_pull_evolution.py')
  106 + self.append(self.test_show_pull_histogram, 'Test show_pull_histogram.py')
102 107
103 # Return 108 # Return
104 return 109 return
@@ -241,6 +246,77 @@ class Test(gammalib.GPythonTestSuite): @@ -241,6 +246,77 @@ class Test(gammalib.GPythonTestSuite):
241 # Return 246 # Return
242 return 247 return
243 248
  249 + # Test show_butterfly
  250 + def test_show_butterfly(self):
  251 + """
  252 + Test show_butterfly
  253 + """
  254 + # Execute script
  255 + self._execute_python('show_butterfly',
  256 + args='data/butterfly.txt example_butterfly.eps')
  257 +
  258 + #TODO: Do any testing
  259 +
  260 + # Return
  261 + return
  262 +
  263 + # Test show_model
  264 + def test_show_model(self):
  265 + """
  266 + Test show_model
  267 + """
  268 + # Execute script
  269 + self._execute_python('show_model',
  270 + args='data/crab.xml Crab example_model.eps')
  271 +
  272 + #TODO: Do any testing
  273 +
  274 + # Return
  275 + return
  276 +
  277 + # Test show_pha
  278 + def test_show_pha(self):
  279 + """
  280 + Test show_pha
  281 + """
  282 + # Execute script
  283 + self._execute_python('show_pha', args='data/pha.fits example_pha.eps')
  284 +
  285 + #TODO: Do any testing
  286 +
  287 + # Return
  288 + return
  289 +
  290 + # Test show_pull_evolution
  291 + def test_show_pull_evolution(self):
  292 + """
  293 + Test show_pull_evolution
  294 + """
  295 + # Execute script
  296 + self._execute_python('show_pull_evolution',
  297 + args='data/pull.dat Pull_Crab_Prefactor '
  298 + 'example_pull_evolution.eps')
  299 +
  300 + #TODO: Do any testing
  301 +
  302 + # Return
  303 + return
  304 +
  305 + # Test show_pull_histogram
  306 + def test_show_pull_histogram(self):
  307 + """
  308 + Test show_pull_histogram
  309 + """
  310 + # Execute script
  311 + self._execute_python('show_pull_histogram',
  312 + args='data/pull.dat Pull_Crab_Prefactor 50 '
  313 + 'example_pull_histogram.eps')
  314 +
  315 + #TODO: Do any testing
  316 +
  317 + # Return
  318 + return
  319 +
244 320
245 # ======================== # 321 # ======================== #
246 # Main routine entry point # 322 # Main routine entry point #
testall.sh
  View file @03b0aa5
1 #!/bin/sh 1 #!/bin/sh
2 # ===================================================================== 2 # =====================================================================
3 -# Run all test and example scripts that come with the package. 3 +# Run some test scripts that come with the package
4 # 4 #
5 -# Copyright (C) 2011-2015 Juergen Knoedlseder 5 +# Copyright (C) 2011-2016 Juergen Knoedlseder
6 # 6 #
7 # This program is free software: you can redistribute it and/or modify 7 # This program is free software: you can redistribute it and/or modify
8 # it under the terms of the GNU General Public License as published by 8 # it under the terms of the GNU General Public License as published by
@@ -25,11 +25,11 @@ base=$PWD @@ -25,11 +25,11 @@ base=$PWD
25 25
26 26
27 # 27 #
28 -# examples 28 +# test/dev
29 # ======== 29 # ========
30 echo 30 echo
31 -echo "=====> examples"  
32 -cd examples 31 +echo "=====> test/dev"
  32 +cd test/dev
33 33
34 # Create local environment 34 # Create local environment
35 rm -rf ctools 35 rm -rf ctools
@@ -41,18 +41,8 @@ export CTOOLS=$PWD/ctools @@ -41,18 +41,8 @@ export CTOOLS=$PWD/ctools
41 # Run checkers 41 # Run checkers
42 ./check_models.py 42 ./check_models.py
43 43
44 -# Run pipelines  
45 -./pipeline_binned_disk.py  
46 -./pipeline_binned_mem.py  
47 -./pipeline_stacked_disk.py  
48 -./pipeline_stacked_mem.py  
49 -./pipeline_unbinned_disk.py  
50 -./pipeline_unbinned_mem.py  
51 -  
52 # Run makers 44 # Run makers
53 ./make_survey.py 45 ./make_survey.py
54 -./make_ts_distributions.py -n 2 -e 0 -d 1800  
55 -#./make_pull_at_sensitivity_limit.py  
56 46
57 # Remove local environment 47 # Remove local environment
58 rm -rf ctools 48 rm -rf ctools