GGti.cpp
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/***************************************************************************
* GGti.cpp - Good time interval class *
* ----------------------------------------------------------------------- *
* copyright (C) 2008-2013 by Juergen Knoedlseder *
* ----------------------------------------------------------------------- *
* *
* This program is free software: you can redistribute it and/or modify *
* it under the terms of the GNU General Public License as published by *
* the Free Software Foundation, either version 3 of the License, or *
* (at your option) any later version. *
* *
* This program is distributed in the hope that it will be useful, *
* but WITHOUT ANY WARRANTY; without even the implied warranty of *
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the *
* GNU General Public License for more details. *
* *
* You should have received a copy of the GNU General Public License *
* along with this program. If not, see <http://www.gnu.org/licenses/>. *
* *
***************************************************************************/
/**
* @file GGti.cpp
* @brief Good time interval class implementation.
* @author Juergen Knoedlseder
*/
/* __ Includes ___________________________________________________________ */
#ifdef HAVE_CONFIG_H
#include <config.h>
#endif
#include "GException.hpp"
#include "GTools.hpp"
#include "GGti.hpp"
#include "GFits.hpp"
#include "GFitsTable.hpp"
#include "GFitsBinTable.hpp"
#include "GFitsTableDoubleCol.hpp"
/* __ Method name definitions ____________________________________________ */
#define G_REMOVE "GGti::remove(int&)"
#define G_TSTART "GGti::tstart(int&)"
#define G_TSTOP "GGti::tstop(int&)"
/* __ Macros _____________________________________________________________ */
/* __ Coding definitions _________________________________________________ */
/* __ Debug definitions __________________________________________________ */
/*==========================================================================
= =
= Constructors/destructors =
= =
==========================================================================*/
/***********************************************************************//**
* @brief Void constructor
***************************************************************************/
GGti::GGti(void)
{
// Initialise class members
init_members();
// Return
return;
}
/***********************************************************************//**
* @brief Copy constructor
*
* @param[in] gti Good Time Intervals.
***************************************************************************/
GGti::GGti(const GGti& gti)
{
// Initialise class members
init_members();
// Copy members
copy_members(gti);
// Return
return;
}
/***********************************************************************//**
* @brief Time reference constructor
*
* @param[in] ref Time reference.
*
* Constructs Good Time Intervals using a specific time reference. The time
* reference will be used when writing the Good Time Intervals into a FITS
* file.
***************************************************************************/
GGti::GGti(const GTimeReference& ref)
{
// Initialise class members
init_members();
// Set time reference
this->reference(ref);
// Return
return;
}
/***********************************************************************//**
* @brief Destructor
***************************************************************************/
GGti::~GGti(void)
{
// Free members
free_members();
// Return
return;
}
/*==========================================================================
= =
= Operators =
= =
==========================================================================*/
/***********************************************************************//**
* @brief Assignment operator
*
* @param[in] gti Good Time Intervals.
* @return Good Time Intervals.
***************************************************************************/
GGti& GGti::operator= (const GGti& gti)
{
// Execute only if object is not identical
if (this != >i) {
// Free members
free_members();
// Initialise private members
init_members();
// Copy members
copy_members(gti);
} // endif: object was not identical
// Return this object
return *this;
}
/*==========================================================================
= =
= Public methods =
= =
==========================================================================*/
/***********************************************************************//**
* @brief Clear Good Time Intervals
***************************************************************************/
void GGti::clear(void)
{
// Free members
free_members();
// Initialise private members
init_members();
// Return
return;
}
/***********************************************************************//**
* @brief Clone Good Time Intervals
*
* @return Pointer to deep copy of Good Time Intervals.
***************************************************************************/
GGti* GGti::clone(void) const
{
return new GGti(*this);
}
/***********************************************************************//**
* @brief Append Good Time Interval
*
* @param[in] tstart Start time of interval.
* @param[in] tstop Stop time of interval.
*
* Appends a Good Time Interval at the end of the container.
*
* The method does nothing if the Good Time Interval is not valid
* (i.e. @p tstart >= @p tstop).
***************************************************************************/
void GGti::append(const GTime& tstart, const GTime& tstop)
{
// Continue only if time interval is valid
if (tstop > tstart) {
// Insert GTI at end of list
insert_gti(m_num, tstart, tstop);
} // endif: Time interval was valid
// Return
return;
}
/***********************************************************************//**
* @brief Insert Good Time Interval
*
* @param[in] tstart Start time of interval.
* @param[in] tstop Stop time of interval.
*
* Inserts a Good Time Interval into the container after the first interval
* that has a start time smaller than @p tstart. The method implicitely
* assumes that the Good Time Intervals are ordered by increasing start time.
*
* The method does nothing if the Good Time Interval is not valid
* (i.e. @p tstart >= @p tstop).
***************************************************************************/
void GGti::insert(const GTime& tstart, const GTime& tstop)
{
// Continue only if time interval is valid
if (tstop > tstart) {
// Determine index at which GTI should be inserted
int inx = 0;
for (int i = 0; i < m_num; ++i) {
if (tstart < m_start[i]) {
break;
}
}
// Insert interval
insert_gti(inx, tstart, tstop);
} // endif: Time interval was valid
// Return
return;
}
/***********************************************************************//**
* @brief Merge all overlapping Good Time Intervals
*
* Merges all overlapping or connecting successive Good Time Intervals. The
* method implicitely assumes that the intervals are ordered by increasing
* start time.
*
* Note that the method does not actually reduce the memory size but just
* updates the information on the number of elements in the array.
***************************************************************************/
void GGti::merge(void)
{
// Find overlaps
int i = 0;
int num = m_num;
while (i < num-1) {
// If GTI overlaps with following one then merge both GTIs, move
// all remaining GTIs one position up, and reduce number of elements
if (m_start[i+1] <= m_stop[i]) {
m_start[i] = (m_start[i] < m_start[i+1]) ? m_start[i] : m_start[i+1];
m_stop[i] = (m_stop[i] > m_stop[i+1]) ? m_stop[i] : m_stop[i+1];
for (int k = i+2; k < num; ++k) {
m_start[k-1] = m_start[k];
m_stop[k-1] = m_stop[k];
}
num--;
}
// Otherwise increment GTI index
else {
i++;
}
} // endwhile: there were still GTIs to check
// Update number of elements in GTI
m_num = num;
// Return
return;
}
/***********************************************************************//**
* @brief Merge Good Time Interval into container
*
* @param[in] tstart Start time of interval.
* @param[in] tstop Stop time of interval.
*
* Inserts a Good Time Interval into the container after the first interval
* that has a start time smaller than @p tstart and then merges any
* overlapping or connecting Good Time Intervals. The method implicitely
* assumes that the intervals are ordered by increasing start time.
*
* The method does nothing if the Good Time Interval is not valid
* (i.e. @p tstart >= @p tstop).
***************************************************************************/
void GGti::merge(const GTime& tstart, const GTime& tstop)
{
// Continue only if time interval is valid
if (tstop > tstart) {
// Determine index at which GTI should be inserted
int inx = 0;
for (int i = 0; i < m_num; ++i) {
if (tstart < m_start[i]) {
break;
}
}
// Insert GTI
insert_gti(inx, tstart, tstop);
// Merge any overlapping GTIs
merge();
} // endif: Time interval was valid
// Return
return;
}
/***********************************************************************//**
* @brief Reduce Good Time Intervals to specified interval
*
* @param[in] tstart Start time of interval.
* @param[in] tstop Stop time of interval.
*
* Reduces the Good Time Intervals to the specified interval. Reducing means
* that all Good Time Intervals are dropped that fall outside the specified
* interval [@p tstart, @p tstop], and Good Time Intervals will be limited
* to >@p tstart and <=@p tstop in case that their boundaries are outside
* [@p tstart, @p tstop].
*
* The method does nothing if the Good Time Interval is not valid
* (i.e. @p tstart >= @p tstop).
***************************************************************************/
void GGti::reduce(const GTime& tstart, const GTime& tstop)
{
// Continue only if time interval is valid
if (tstop > tstart) {
// Adjust existing GTIs. This will limit all GTIs to [tstart,tstop].
// All GTIs outside [tstart,tstop] will have start > stop. The number
// of valid GTIs will also be determined.
int num = 0;
for (int i = 0; i < m_num; ++i) {
if (m_start[i] < tstart) {
m_start[i] = tstart;
}
if (m_stop[i] > tstop) {
m_stop[i] = tstop;
}
if (m_start[i] <= m_stop[i]) {
num++;
}
}
// If we still have valid GTIs then allocate memory for them, copy
// over the start and stop times, and update the attributes
if (num > 0) {
// Allocate new intervals
GTime* start = new GTime[num];
GTime* stop = new GTime[num];
// Copy valid intervals
for (int i = 0; i < m_num; ++i) {
if (m_start[i] <= m_stop[i]) {
start[i] = m_start[i];
stop[i] = m_stop[i];
}
}
// Free old memory
if (m_start != NULL) delete [] m_start;
if (m_stop != NULL) delete [] m_stop;
// Set new memory
m_start = start;
m_stop = stop;
// Set attributes
m_num = num;
set_attributes();
} // endif: there were still valid GTIs
// ... otherwise we remove all GTIs
else {
clear();
}
} // endif: Time interval was valid
// Return
return;
}
/***********************************************************************//**
* @brief Remove Good Time Interval
*
* @param[in] index Good Time Interval index (0,...,size()-1).
*
* Removes Good Time Interval at @p index from the container. All intervals
* after the specified @p index are moved forward by one position.
*
* Note that the method does not actually reduce the memory size but just
* updates the information on the number of elements in the array.
***************************************************************************/
void GGti::remove(const int& index)
{
#if defined(G_RANGE_CHECK)
// If index is outside boundary then throw an error
if (index < 0 || index >= m_num) {
throw GException::out_of_range(G_REMOVE, index, 0, m_num-1);
}
#endif
// Move all elements located after index forward
for (int i = index+1; i < m_num; ++i) {
m_start[i-1] = m_start[i];
m_stop[i-1] = m_stop[i];
}
// Reduce number of elements by one
m_num--;
// Update attributes
set_attributes();
// Return
return;
}
/***********************************************************************//**
* @brief Reserve space for Good Time Intervals
*
* @param[in] num Number of elements.
*
* This method does nothing (it is needed to satisfy the GContainer
* interface).
***************************************************************************/
void GGti::reserve(const int& num)
{
// Return
return;
}
/***********************************************************************//**
* @brief Append Good Time Intervals
*
* @param[in] gti Good Time Intervals.
*
* Append Good Time Intervals to the container. The method performs automatic
* time reference conversion in case that the specified Good Time Intervals
* @p gti have a time reference that differs from that of the current
* instance.
***************************************************************************/
void GGti::extend(const GGti& gti)
{
// Do nothing if Good Time Intervals are empty
if (!gti.is_empty()) {
// Allocate new intervals
int num = m_num+gti.size();
GTime* start = new GTime[num];
GTime* stop = new GTime[num];
// Initialise index
int inx = 0;
// Copy existing intervals
for (; inx < m_num; ++inx) {
start[inx] = m_start[inx];
stop[inx] = m_stop[inx];
}
// Append intervals. Convert to GTI reference on the fly.
for (int i = 0; i < gti.size(); ++i, ++inx) {
double tstart = gti.m_start[i].convert(gti.reference());
double tstop = gti.m_stop[i].convert(gti.reference());
start[inx].set(tstart, this->reference());
stop[inx].set(tstop, this->reference());
}
// Free memory
if (m_start != NULL) delete [] m_start;
if (m_stop != NULL) delete [] m_stop;
// Set new memory
m_start = start;
m_stop = stop;
// Set number of elements
m_num = num;
// Set attributes
set_attributes();
} // endif: Good Time Intervals were not empty
// Return
return;
}
/***********************************************************************//**
* @brief Load Good Time Intervals from FITS file
*
* @param[in] filename FITS filename.
* @param[in] extname GTI extension name (defaults to "GTI")
*
* Loads the Good Time Intervals from FITS file.
***************************************************************************/
void GGti::load(const std::string& filename, const std::string& extname)
{
// Allocate FITS file
GFits file;
// Open FITS file
file.open(filename);
// Get GTI table
const GFitsTable& table = *file.table(extname);
// Read GTI from table
read(table);
// Close FITS file
file.close();
// Return
return;
}
/***********************************************************************//**
* @brief Save Good Time Intervals intervals to FITS file
*
* @param[in] filename FITS filename.
* @param[in] clobber Overwrite any existing GTI extension?
* @param[in] extname GTI extension name (defaults to "GTI")
*
* Saves Good Time Intervals into extension @p extname of a FITS file. If the
* file does not exist it is created. If the file exists the GTI is appended
* as extension. If another GTI exists already it is overwritten if
* @p clobber=true.
***************************************************************************/
void GGti::save(const std::string& filename, const bool& clobber,
const std::string& extname) const
{
// Allocate FITS file
GFits file;
// Write GTI to FITS file
write(file, extname);
// Save to file
file.saveto(filename, clobber);
// Return
return;
}
/***********************************************************************//**
* @brief Read Good Time Intervals and time reference from FITS table
*
* @param[in] table FITS table.
*
* Reads the Good Time Intervals and time reference from a FITS table.
***************************************************************************/
void GGti::read(const GFitsTable& table)
{
// Free members
free_members();
// Initialise attributes
init_members();
// Read time reference
m_reference.read(table);
// Extract GTI information from FITS table
m_num = table.integer("NAXIS2");
if (m_num > 0) {
// Set GTIs
m_start = new GTime[m_num];
m_stop = new GTime[m_num];
for (int i = 0; i < m_num; ++i) {
m_start[i].set(table["START"]->real(i), m_reference);
m_stop[i].set(table["STOP"]->real(i), m_reference);
}
// Set attributes
set_attributes();
}
// Return
return;
}
/***********************************************************************//**
* @brief Write Good Time Intervals and time reference into FITS object
*
* @param[in] file FITS file.
* @param[in] extname GTI extension name (defaults to "GTI")
*
* Saves Good Time Intervals and time reference into a FITS object. If the
* file does not exist it is created. If the file exists the GTI is appended
* as extension. If another GTI exists already it is overwritten if
* @p clobber=true.
*
* @todo Implement clobber method for overwriting of existing GTIs.
***************************************************************************/
void GGti::write(GFits& file, const std::string& extname) const
{
// Create GTI columns
GFitsTableDoubleCol cstart = GFitsTableDoubleCol("START", m_num);
GFitsTableDoubleCol cstop = GFitsTableDoubleCol("STOP", m_num);
// Fill GTI columns in specified time reference
for (int i = 0; i < m_num; ++i) {
cstart(i) = m_start[i].convert(m_reference);
cstop(i) = m_stop[i].convert(m_reference);
}
// Create GTI table
GFitsBinTable* table = new GFitsBinTable(m_num);
table->append(cstart);
table->append(cstop);
table->extname(extname);
// Write time reference
m_reference.write(*table);
// Write to FITS file
file.append(*table);
// Free table
delete table;
// Return
return;
}
/***********************************************************************//**
* @brief Returns earliest start time in Good Time Intervals
*
* @return Earliest start time in Good Time Intervals.
***************************************************************************/
const GTime& GGti::tstart(void) const
{
// Return
return m_tstart;
}
/***********************************************************************//**
* @brief Returns latest stop time in Good Time Intervals
*
* @return Latest stop time in Good Time Intervals.
***************************************************************************/
const GTime& GGti::tstop(void) const
{
// Return
return m_tstop;
}
/***********************************************************************//**
* @brief Returns start time for a given Good Time Interval
*
* @param[in] index Good Time Interval index (0,...,size()-1).
*
* @exception GException::out_of_range
* Specified index is out of range.
***************************************************************************/
const GTime& GGti::tstart(const int& index) const
{
#if defined(G_RANGE_CHECK)
// If index is outside boundary then throw an error
if (index < 0 || index >= m_num) {
throw GException::out_of_range(G_TSTART, index, 0, m_num-1);
}
#endif
// Return
return (m_start[index]);
}
/***********************************************************************//**
* @brief Returns stop time for a given Good Time Interval
*
* @param[in] index Good Time Interval index (0,...,size()-1).
*
* @exception GException::out_of_range
* Specified index is out of range.
***************************************************************************/
const GTime& GGti::tstop(const int& index) const
{
#if defined(G_RANGE_CHECK)
// If index is outside boundary then throw an error
if (index < 0 || index >= m_num) {
throw GException::out_of_range(G_TSTOP, index, 0, m_num-1);
}
#endif
// Return
return (m_stop[index]);
}
/***********************************************************************//**
* @brief Returns elapsed time
*
* @return Elapsed time [seconds].
*
* Returns the elapsed time in seconds. The elapsed time is defined as the
* time difference between the latest stop time and the earliest start time
* in the Good Time Intervals.
***************************************************************************/
const double& GGti::telapse(void) const
{
// Return
return m_telapse;
}
/***********************************************************************//**
* @brief Returns ontime
*
* @return Ontime [seconds].
*
* Returns the ontime in seconds. The ontime is defined as the sum of all
* Good Time Intervals.
***************************************************************************/
const double& GGti::ontime(void) const
{
// Return
return m_ontime;
}
/***********************************************************************//**
* @brief Set time reference for Good Time Intervals
*
* @param[in] ref Time reference.
*
* Sets the time reference of the Good Time Intervals. This defines the
* reference time which will be writted into the FITS file upon saving of
* the Good Time Intervals.
***************************************************************************/
void GGti::reference(const GTimeReference& ref)
{
// Set time reference
m_reference = ref;
// Return
return;
}
/***********************************************************************//**
* @brief Return time reference for Good Time Intervals
*
* @return Time reference.
*
* Returns the time reference of the Good Time Intervals.
***************************************************************************/
const GTimeReference& GGti::reference(void) const
{
// Return time reference
return m_reference;
}
/***********************************************************************//**
* @brief Checks whether Good Time Intervals contain time
*
* @param[in] time Time to be checked.
*
* Checks if a given @p time falls in at least one of the Good Time
* Intervals. The method exits when the first matching interval has been
* found.
***************************************************************************/
bool GGti::contains(const GTime& time) const
{
// Initialise test
bool found = false;
// Test all GTIs
for (int i = 0; i < m_num; ++i) {
if (time >= m_start[i] && time <= m_stop[i]) {
found = true;
break;
}
}
// Return result
return found;
}
/***********************************************************************//**
* @brief Print Good Time Intervals
*
* @param[in] chatter Chattiness (defaults to NORMAL).
* @return String containing Good Time Interval information.
***************************************************************************/
std::string GGti::print(const GChatter& chatter) const
{
// Initialise result string
std::string result;
// Continue only if chatter is not silent
if (chatter != SILENT) {
// Append header
result.append("=== GGti ===");
// Append GTI information
result.append("\n"+gammalib::parformat("Number of intervals"));
result.append(gammalib::str(size()));
result.append("\n"+gammalib::parformat("Ontime"));
result.append(gammalib::str(ontime())+" sec");
result.append("\n"+gammalib::parformat("Elapsed time"));
result.append(gammalib::str(telapse())+" sec");
result.append("\n"+gammalib::parformat("Time range"));
result.append(gammalib::str(tstart().convert(m_reference)));
result.append(" - ");
result.append(gammalib::str(tstop().convert(m_reference)));
result.append(" "+reference().timeunit());
result.append(" ("+reference().timesys()+")");
result.append("\n"+gammalib::parformat("Reference MDJ"));
result.append(gammalib::str(reference().mjdref()));
// EXPLICIT: Append time reference information
if (chatter >= EXPLICIT) {
result.append("\n"+reference().print(chatter));
}
} // endif: chatter was not silent
// Return result
return result;
}
/*==========================================================================
= =
= Private methods =
= =
==========================================================================*/
/***********************************************************************//**
* @brief Initialise class members
***************************************************************************/
void GGti::init_members(void)
{
// Initialise members
m_num = 0;
m_tstart.clear();
m_tstop.clear();
m_ontime = 0.0;
m_telapse = 0.0;
m_start = NULL;
m_stop = NULL;
// Initialise time reference with native reference
GTime time;
m_reference = time.reference();
// Return
return;
}
/***********************************************************************//**
* @brief Copy class members
*
* @param[in] gti Good Time Intervals.
***************************************************************************/
void GGti::copy_members(const GGti& gti)
{
// Copy attributes
m_num = gti.m_num;
m_tstart = gti.m_tstart;
m_tstop = gti.m_tstop;
m_ontime = gti.m_ontime;
m_telapse = gti.m_telapse;
m_reference = gti.m_reference;
// Copy start/stop times
if (m_num > 0) {
m_start = new GTime[m_num];
m_stop = new GTime[m_num];
for (int i = 0; i < m_num; ++i) {
m_start[i] = gti.m_start[i];
m_stop[i] = gti.m_stop[i];
}
}
// Return
return;
}
/***********************************************************************//**
* @brief Delete class members
***************************************************************************/
void GGti::free_members(void)
{
// Free memory
if (m_start != NULL) delete [] m_start;
if (m_stop != NULL) delete [] m_stop;
// Signal free pointers
m_start = NULL;
m_stop = NULL;
// Return
return;
}
/***********************************************************************//**
* @brief Set class attributes
*
* Compute the following class attributes:
*
* m_tstart - Earliest start time of GTIs
* m_stop - Latest stop time of GTIs
* m_telapse - Latest stop time minus earliest start time of GTIs [sec]
* m_ontime - Sum of all intervals [sec]
***************************************************************************/
void GGti::set_attributes(void)
{
// If there are intervals then determine the start and stop time
// from these intervals ...
if (m_num > 0) {
m_tstart = m_start[0];
m_tstop = m_stop[0];
for (int i = 1; i < m_num; ++i) {
if (m_start[i] < m_tstart) m_tstart = m_start[i];
if (m_stop[i] > m_tstop) m_tstop = m_stop[i];
}
}
// ... otherwise clear the start and stop time
else {
m_tstart.clear();
m_tstop.clear();
}
// Set attributes
m_telapse = m_tstop.secs() - m_tstart.secs();
m_ontime = 0.0;
for (int i = 0; i < m_num; ++i) {
m_ontime += (m_stop[i].secs() - m_start[i].secs());
}
// Return
return;
}
/***********************************************************************//**
* @brief Insert Good Time Interval
*
* @param[in] index Index after which interval is inserted.
* @param[in] tstart Start time of interval.
* @param[in] tstop Stop time of interval.
*
* Inserts a Good Time Interval after the specified @p index in the Good
* Time Intervals. The method does not reorder the intervals by time,
* instead the client needs to determine the approriate @p index.
*
* Invalid parameters do not produce any exception, but are handled
* transparently. If the interval is invalid (i.e. @p tstart >= @p tstop)
* then nothing is done. If the @p index is out of the valid range, the
* index will be adjusted to either the first or the last element.
***************************************************************************/
void GGti::insert_gti(const int& index, const GTime& tstart, const GTime& tstop)
{
// Continue only if time interval is valid
if (tstop > tstart) {
// Set index
int inx = index;
// If inx is out of range then adjust it
if (inx < 0) inx = 0;
if (inx > m_num) inx = m_num;
// Allocate new intervals
int num = m_num+1;
GTime* start = new GTime[num];
GTime* stop = new GTime[num];
// Copy intervals before GTI to be inserted
for (int i = 0; i < inx; ++i) {
start[i] = m_start[i];
stop[i] = m_stop[i];
}
// Insert GTI
start[inx] = tstart;
stop[inx] = tstop;
// Copy intervals after GTI to be inserted
for (int i = inx+1; i < num; ++i) {
start[i] = m_start[i-1];
stop[i] = m_stop[i-1];
}
// Free memory
if (m_start != NULL) delete [] m_start;
if (m_stop != NULL) delete [] m_stop;
// Set new memory
m_start = start;
m_stop = stop;
// Set number of elements
m_num = num;
// Set attributes
set_attributes();
} // endif: Time interval was valid
// Return
return;
}