Allow for CSV or FITS file to store covariance matrix (#1863)

Jürgen Knödlseder
1 parent 9872a7d1
Showing 3 changed files with 22 additions and 17 deletions
doc/source/users/reference_manual/ctlike.rst
src/ctlike/ctlike.cpp
src/ctlike/ctlike.hpp
@@ -48,13 +48,13 @@ the spatial model parameters can be kept fixed during that computation
 ctlike generates an output model XML file that contains the values of the 
 best fitting model parameters. For all free parameters, an ``error`` attribute
 is added that provides the statistical uncertainty in the parameter estimate.
-In addition, the entire output of the covariance matrix to a separate file in CSV
-format can be queried (parameter ``outcovmat``). The parameter order given in the
-file header corresponds to the arrangement of the covariance matrix entries.
 If computation of the Test Statistics has been requested for a model component,
 a ``ts`` attribute providing the Test Statistics value is added. The output model
 can be used as an input model for other ctools.
+In addition, the covariance matrix can be saved into a file by specifying a
+file name for the ``outcovmat`` parameter. If the file name ends with ``.fits``
+or ``.fit`` a FITS file is written, otherwise a CSV file is written.
 General parameters
@@ -89,7 +89,7 @@ General parameters
     the maximum likelihood fit.
 ``(outcovmat = NONE) [string]``
-    Output CSV file to store covariance matrix.
+    Output FITS or CSV file to store covariance matrix.
 ``(stat = POISSON) [string]``
     Fitting statistics (POISSON or GAUSSIAN; only affects binned analysis).
 /***************************************************************************
  *                ctlike - Maximum likelihood fitting tool                 *
  * ----------------------------------------------------------------------- *
- *  copyright (C) 2010-2016 by Juergen Knoedlseder                         *
+ *  copyright (C) 2010-2017 by Juergen Knoedlseder                         *
  * ----------------------------------------------------------------------- *
  *                                                                         *
  *  This program is free software: you can redistribute it and/or modify   *
@@ -321,8 +321,13 @@ void ctlike::run(void)
 /***********************************************************************//**
  * @brief Save results
  *
- * This method saves the fit results into a XML file and a CSV file. If
- * the filename parameters are "NONE", the files are not saved.
+ * This method saves the fit results and the covariance matrix. The fit
+ * results are written into a XML file while the covariance matrix is written
+ * into either a FITS or a CSV file, depending on the file type extension
+ * (an extension of `.fits` or `.fit` produce a FITS file, any other
+ * extension produces a CSV file).
+ *
+ * If the filenames are `NONE` no information is saved.
  ***************************************************************************/
 void ctlike::save(void)
 {
 /***************************************************************************
  *                ctlike - Maximum likelihood fitting tool                 *
  * ----------------------------------------------------------------------- *
- *  copyright (C) 2010-2016 by Juergen Knoedlseder                         *
+ *  copyright (C) 2010-2017 by Juergen Knoedlseder                         *
  * ----------------------------------------------------------------------- *
  *                                                                         *
  *  This program is free software: you can redistribute it and/or modify   *
@@ -68,17 +68,17 @@ protected:
     double reoptimize_lm(void);
     // User parameters
-    bool          m_refit;           //!< Refitting
-    GFilename     m_outmodel;        //!< Source model output XML file name
-    GFilename     m_outcovmat;       //!< Covariance matrix output CSV file name
-    bool          m_apply_edisp;     //!< Apply energy dispersion?
-    bool          m_fix_spat_for_ts; //!< Fix spatial parameters for TS computation?
-    GChatter      m_chatter;         //!< Chattiness
+    bool      m_refit;           //!< Refitting
+    GFilename m_outmodel;        //!< Source model output XML file name
+    GFilename m_outcovmat;       //!< Covariance matrix output file name
+    bool      m_apply_edisp;     //!< Apply energy dispersion?
+    bool      m_fix_spat_for_ts; //!< Fix spatial parameters for TS computation?
+    GChatter  m_chatter;         //!< Chattiness
     // Members
-    int           m_max_iter;   //!< Maximum number of iterations
-    int           m_max_stall;  //!< Maximum number of stalls
-    double        m_logL;       //!< Maximum log likelihood
+    int       m_max_iter;        //!< Maximum number of iterations
+    int       m_max_stall;       //!< Maximum number of stalls
+    double    m_logL;            //!< Maximum log likelihood
 };
 #endif /* CTLIKE_HPP */