comgendb.py
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#! /usr/bin/env python
# ==========================================================================
# Generate COMPTEL database from HEASARC archive
#
# Copyright (C) 2022 Juergen Knoedlseder
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
#
# This program is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# GNU General Public License for more details.
#
# You should have received a copy of the GNU General Public License
# along with this program. If not, see <http://www.gnu.org/licenses/>.
#
# ==========================================================================
import sys
import glob
import os
from distutils.spawn import find_executable
import gammalib
import ctools
from cscripts import modutils
# ============== #
# comgendb class #
# ============== #
class comgendb(ctools.cscript):
"""
Generate COMPTEL database from HEASARC archive
"""
# Constructor
def __init__(self, *argv):
"""
Constructor
"""
# Initialise application by calling the base class constructor
self._init_cscript(self.__class__.__name__, ctools.__version__, argv)
# Initialise members
self._evp_list = []
self._oad_list = []
self._tim_list = []
self._xml_list = []
# Return
return
# Private methods
def _get_parameters(self):
"""
Get parameters from parfile
"""
# Query parameters
self['archive'].string()
self['refdata'].query()
self['quality'].integer()
self['download'].boolean()
# Query ahead output model filename
if self._read_ahead():
self['dbase'].string()
# Write input parameters into logger
self._log_parameters(gammalib.TERSE)
# Return
return
def _download(self):
"""
Download COMPTEL HEASARC archive
"""
# Log header
self._log_header1(gammalib.TERSE, 'Download HEASARC archive')
# Check whether wget executable exists
if find_executable('wget') is None:
msg = ('"wget" command not found on system, unable to download '
'COMPTEL HEASARC archive.')
raise RuntimeError(msg)
# Set archive directory name
dirname = gammalib.expand_env(self['archive'].string())
# Build wget command string
cmd = ('wget -r -N -nH --cut-dirs=4 -A "*.fits,*.fits.gz" -e robots=off '
'-P %s -q https://heasarc.gsfc.nasa.gov/FTP/compton/data/comptel/' %
(dirname))
# Launch download
os.system(cmd)
# Return
return
def _get_phases(self):
"""
Get available phases
"""
# Set archive directory name
dirname = gammalib.expand_env(self['archive'].string())
# Raise an exception if the archive does not exist
if not os.path.isdir(dirname):
msg = ('Archive directory "%s" does not exist.' % dirname)
raise RuntimeError(msg)
# Set search pattern
pattern = '%s/phase*' % (gammalib.expand_env(self['archive'].string()))
# Get available phases
phases = glob.glob(pattern)
phases.sort()
# Return phases
return phases
def _get_relpath(self, path, dest):
"""
Get relative path with respect to dest
Parameters
----------
path : str
Full path name
dest : str
Destination path name
Returns
-------
relpath : str
Relative path
"""
# Split path and destination in segments
path_split = path.split('/')
dest_split = dest.split('/')
# Get index of last agreement
index = -1
for i, segment in enumerate(dest_split):
if segment == path_split[i]:
index = i
# Set relative path
if index == -1:
relpath = path
else:
relpath = ''
for i in range(index+1,len(path_split)):
if relpath != '':
relpath += '/'
relpath += path_split[i]
# Return relative path
return relpath
def _get_evp_list(self):
"""
Get EVP list
Returns
-------
evp_list : list of dict
EVP database
"""
# Initialse EVP list
evp_list = []
# Get available phases
phases = self._get_phases()
# Loop over phases
for phase in phases:
# Get available VPs
vps = glob.glob('%s/vp*' % phase)
vps.sort()
# Loop over VPs
for vp in vps:
# Get EVPs for VP
evps = self._get_evps_for_vp(vp)
# Append EVPs to list
evp_list.extend(evps)
# Sort EVP list by start day
evp_list.sort(lambda x,y : cmp(x['tjd_start'], y['tjd_start']))
# Return EVP list
return evp_list
def _get_evps_for_vp(self, vp):
"""
Build EVP database entries for Viewing Period
Parameters
----------
vp : str
VP path
Returns
-------
evp_list : list of dict
EVP database entries
"""
# Get archive name and expanded path
archive = self['archive'].string()
archive_path = gammalib.expand_env(archive)
# Get VP name
vpname = os.path.basename(vp)
# Initialse EVP list
evp_list = []
# Get EVP files
evps = glob.glob('%s/*evp.fits*' % vp)
# Loop over all EVP files
for evp in evps:
# Set EVP filename
evpname = archive+'/'+self._get_relpath(evp, archive_path).strip('.gz')
# Try opening file
try:
fits = gammalib.GFits(evpname)
except:
self._log_string(gammalib.NORMAL, '*** Unable to open EVP file'
' "%s". Skip file.' % (evpname))
continue
# Get information from EVP file
evp_dict = self._get_evp_info(evpname)
# Skip file if it has a negative quality
if evp_dict['quality'] < 0:
self._log_string(gammalib.NORMAL, '*** EVP file "%s" has negative '
'quality %d. Skip file.' % (evpname, evp_dict['quality']))
continue
# Skip file if the duration derived from the events is not consistent
# with the duration derived from the header
duration_evt = evp_dict['tjd_stop'] - evp_dict['tjd_start']
duration_hdr = evp_dict['vieday'] - evp_dict['visday']
difference = abs(duration_evt-duration_hdr)
if difference > 3:
self._log_string(gammalib.NORMAL, '*** EVP file "%s" has inconsistent '
'duration between events (%d days) and header '
'(%d days). Skip file.' % \
(evpname, duration_evt, duration_hdr))
continue
if duration_hdr > duration_evt:
self._log_string(gammalib.NORMAL, '--- EVP file "%s" header indicates '
'duration of %d days, but events cover only %d days.' % \
(evpname, duration_hdr, duration_evt))
elif duration_hdr < duration_evt:
self._log_string(gammalib.NORMAL, '--- EVP file "%s" header indicates '
'duration of %d days, but events cover %d days.' % \
(evpname, duration_hdr, duration_evt))
# Set VP
evp_dict['vp'] = vpname
# Append dictionary
evp_list.append(evp_dict)
# Sort EVP list by start day
evp_list.sort(lambda x,y : cmp(x['tjd_start'], y['tjd_start']))
# Return EVP list
return evp_list
def _get_evp_info(self, evpname):
"""
Build EVP database entry from EVP file
Parameters
----------
evpname : str
EVP filename
Returns
-------
evp_dict : dict
EVP database entry
"""
# Open EVP file
fits = gammalib.GFits(evpname)
# Get event table
events = fits.table(1)
nevents = events.nrows()
# Extract attributes for EVP file
obs_id = events.real('OBS_ID')
object = events.string('OBJECT')
visday = events.integer('VISDAY')
vistim = events.integer('VISTIM')
vieday = events.integer('VIEDAY')
vietim = events.integer('VIETIM')
glon_scz = events.real('GLON_SCZ')
glat_scz = events.real('GLAT_SCZ')
verno = events.integer('DSD_REP')
quality = events.integer('DSD_QUA')
if events.has_card('TITLE'):
title = events.string('TITLE')
elif events.has_card('TITLE1') and events.has_card('TITLE2'):
title = events.string('TITLE1') + events.string('TITLE2')
dsd_id = '%s-%s-%d' % (events.string('DSD_SB'), events.string('DSTID'),
events.integer('DSD_NO'))
# Get time columns
tjd = events['TJD']
tics = events['TICS']
# Get start and end time. Catch any errors since files may be corrupt.
# In case of errors, use times from file header.
try:
tjd_start = tjd[0]
tics_start = tics[0]
tjd_stop = tjd[nevents-1]
tics_stop = tics[nevents-1]
except:
self._log_string(gammalib.NORMAL, '*** Corrupt EVP file "%s" encountered. '
'Set EVP quality to -200.' % (evpname))
tjd_start = visday
tics_start = vistim
tjd_stop = vieday
tics_stop = vietim
quality = -200
# Compute GTime of first and last event
tstart = gammalib.com_time(tjd_start, tics_start)
tstop = gammalib.com_time(tjd_stop, tics_stop)
# Check that start time is before stop time
if tstart >= tstop:
quality = -200
gti = gammalib.GGti()
self._log_string(gammalib.NORMAL, '*** Corrupt EVP file "%s" encountered. '
'Start time %s is later than stop time %s. Set EVP '
'quality to -200.' % (evpname, tstart.utc(), tstop.utc()))
# Set GTI for EVP
else:
gti = gammalib.GGti(tstart, tstop)
# Build dictionary
evp_dict = {'filename': evpname,
'nevents': nevents,
'obs_id': obs_id,
'dsd_id': dsd_id,
'object': object,
'glon_scz': glon_scz,
'glat_scz': glat_scz,
'date_start': tstart.utc(),
'date_stop': tstop.utc(),
'tjd_start': tjd_start,
'tics_start': tics_start,
'tjd_stop': tjd_stop,
'tics_stop': tics_stop,
'tstart': tstart,
'tstop': tstop,
'visday': visday,
'vistim': vistim,
'vieday': vieday,
'vietim': vietim,
'gti': gti,
'quality': quality,
'verno': verno,
'title': title}
# Close FITS file
fits.close()
# Correct quality flags for some files according to database reports
if evp_dict['dsd_id'] == 'M-EVP-26342' or \
evp_dict['dsd_id'] == 'M-EVP-24955' or \
evp_dict['dsd_id'] == 'M-EVP-24963':
self._log_string(gammalib.NORMAL, '*** Quality flag for "%s" changed '
'from %s to 50 according to database reports.' %
(evp_dict['filename'], evp_dict['quality']))
evp_dict['quality'] = 50
# Return information
return evp_dict
def _get_oad_list(self):
"""
Get OAD list
Returns
-------
oad_list : list of dict
OAD database
"""
# Initialse OAD list
oad_list = []
# Get available phases
phases = self._get_phases()
# Loop over phases
for phase in phases:
# Get available VPs
vps = glob.glob('%s/vp*' % phase)
vps.sort()
# Loop over VPs
for vp in vps:
# Get OADs for VP
oads = self._get_oads_for_vp(vp)
# Append OADs to list
oad_list.extend(oads)
# Sort OAD list by start day
oad_list.sort(lambda x,y : cmp(x['tjd_start'], y['tjd_start']))
# Return OAD list
return oad_list
def _get_oads_for_vp(self, vp):
"""
Build OAD database entries for Viewing Period
Parameters
----------
vp : str
VP path
Returns
-------
oad_list : list of dict
OAD database entries
"""
# Get archive name and expanded path
archive = self['archive'].string()
archive_path = gammalib.expand_env(archive)
# Get VP name
vpname = os.path.basename(vp)
# Initialse OAD list
oad_list = []
# Get OAD files
oads = glob.glob('%s/*oad.fits*' % vp)
# Loop over all OAD files
for oad in oads:
# Set OAD filename
oadname = archive+'/'+self._get_relpath(oad, archive_path).strip('.gz')
# Try opening file
try:
fits = gammalib.GFits(oadname)
except:
self._log_string(gammalib.NORMAL, '*** Unable to open OAD file "%s". '
'Skip file.' % (oadname))
continue
# Get information from OAD file
oad_dict = self._get_oad_info(oadname)
# Skip file if it has a negative quality
if oad_dict['quality'] < 0:
self._log_string(gammalib.NORMAL, '*** OAD file "%s" has quality %d. '
'Skip file.' % (oadname, oad_dict['quality']))
continue
# Set VP
oad_dict['vp'] = vpname
# Append dictionary
oad_list.append(oad_dict)
# Sort OAD list by start day
oad_list.sort(lambda x,y : cmp(x['tjd_start'], y['tjd_start']))
# Return OAD list
return oad_list
def _get_oad_info(self, oadname):
"""
Build OAD database entry from OAD file
Parameters
----------
oadname : str
OAD filename
Returns
-------
oad_dict : dict
OAD database entry
"""
# Open OAD file
fits = gammalib.GFits(oadname)
# Get superpacket table
records = fits.table(1)
nrecords = records.nrows()
# Extract attributes for OAD file
obs_id = records.real('OBS_ID')
object = records.string('OBJECT')
if records.has_card('GLON_SCZ'):
glon_scz = records.real('GLON_SCZ')
else:
glon_scz = -1000.0
if records.has_card('GLAT_SCZ'):
glat_scz = records.real('GLAT_SCZ')
else:
glat_scz = -1000.0
quality = records.integer('DSD_QUA')
dsd_id = '%s-%s-%d' % (records.string('DSD_SB'), records.string('DSTID'),
records.integer('DSD_NO'))
# Get time columns
tjd = records['TJD']
tics = records['TICS']
# Get start and end time. Catch any errors since files may be corrupt.
# In case of errors, use times from file header.
try:
tjd_start = tjd[0]
tics_start = tics[0]
tjd_stop = tjd[nrecords-1]
tics_stop = tics[nrecords-1]
except:
self._log_string(gammalib.NORMAL, '*** Corrupt OAD file "%s" encountered. '
'Set OAD quality to -200.' % (evpname))
tjd_start = records.integer('VISDAY')
tics_start = records.integer('VISTIM')
tjd_stop = records.integer('VIEDAY')
tics_stop = records.integer('VIETIM')
quality = -200
# Compute GTime of first and last superpacket
tstart = gammalib.com_time(tjd_start, tics_start)
tstop = gammalib.com_time(tjd_stop, tics_stop)
# Set GTI for OAD
gti = gammalib.GGti(tstart, tstop)
# Build dictionary
oad_dict = {'filename': oadname,
'superpackets': nrecords,
'obs_id': obs_id,
'dsd_id': dsd_id,
'object': object,
'glon_scz': glon_scz,
'glat_scz': glat_scz,
'date_start': tstart.utc(),
'date_stop': tstop.utc(),
'tjd_start': tjd_start,
'tics_start': tics_start,
'tjd_stop': tjd_stop,
'tics_stop': tics_stop,
'tstart': tstart,
'tstop': tstop,
'gti': gti,
'quality': quality}
# Close FITS file
fits.close()
# Return information
return oad_dict
def _get_tim_list(self):
"""
Get TIM list
Returns
-------
tim_list : list of dict
TIM database
"""
# Initialse TIM list
tim_list = []
# Get available phases
phases = self._get_phases()
# Loop over phases
for phase in phases:
# Get available VPs
vps = glob.glob('%s/vp*' % phase)
vps.sort()
# Loop over VPs
for vp in vps:
# Get TIMs for VP
tims = self._get_tims_for_vp(vp)
# Append TIMs to list
tim_list.extend(tims)
# Sort TIM list by start day
tim_list.sort(lambda x,y : cmp(x['tjd_start'], y['tjd_start']))
# Return TIM list
return tim_list
def _get_tims_for_vp(self, vp):
"""
Build TIM database entries for Viewing Period
Parameters
----------
vp : str
VP path
Returns
-------
tim_list : list of dict
TIM database entries
"""
# Get archive name and expanded path
archive = self['archive'].string()
archive_path = gammalib.expand_env(archive)
# Get VP name
vpname = os.path.basename(vp)
# Initialse TIM list
tim_list = []
# Get TIM files
tims = glob.glob('%s/*tim.fits*' % vp)
# Loop over all TIM files
for tim in tims:
# Set TIM filename
timname = archive+'/'+self._get_relpath(tim, archive_path).strip('.gz')
# Try opening file
try:
fits = gammalib.GFits(timname)
except:
self._log_string(gammalib.NORMAL, '*** Unable to open TIM file "%s". '
'Skip file.' % (timname))
continue
# Get information from TIM file
tim_dict = self._get_tim_info(timname)
# Skip file if it has a negative quality
if tim_dict['quality'] < 0:
self._log_string(gammalib.NORMAL, '*** TIM file "%s" has quality %d. '
'Skip file.' % (timname, tim_dict['quality']))
continue
# Set VP
tim_dict['vp'] = vpname
# Append dictionary
tim_list.append(tim_dict)
# Sort TIM list by start day
tim_list.sort(lambda x,y : cmp(x['tjd_start'], y['tjd_start']))
# Return TIM list
return tim_list
def _get_tim_info(self, timname):
"""
Build TIM database entry from TIM file
Parameters
----------
timname : str
TIM filename
Returns
-------
tim_dict : dict
TIM database entry
"""
# Open TIM file
fits = gammalib.GFits(timname)
# Get superpacket table
records = fits.table(1)
nrecords = records.nrows()
# Extract attributes for TIM file
obs_id = records.real('OBS_ID')
object = records.string('OBJECT')
visday = records.integer('VISDAY')
vistim = records.integer('VISTIM')
vieday = records.integer('VIEDAY')
vietim = records.integer('VIETIM')
glon_scz = records.real('GLON_SCZ')
glat_scz = records.real('GLAT_SCZ')
quality = records.integer('DSD_QUA')
dsd_id = '%s-%s-%d' % (records.string('DSD_SB'), records.string('DSTID'),
records.integer('DSD_NO'))
# Get time columns
start_tjd = records['START_TJD']
start_tic = records['START_TIC']
end_tjd = records['END_TJD']
end_tic = records['END_TIC']
# Get start and end time. Catch any errors since files may be corrupt.
# In case of errors, use times from file header.
try:
tjd_start = start_tjd[0]
tics_start = start_tic[0]
tjd_stop = end_tjd[nrecords-1]
tics_stop = end_tic[nrecords-1]
except:
self._log_string(gammalib.NORMAL, '*** Corrupt TIM file "%s" encountered. '
'Set TIM quality to -200.' % (evpname))
tjd_start = visday
tics_start = vistim
tjd_stop = vieday
tics_stop = vietim
quality = -200
# Close FITS file
fits.close()
# Compute GTime of first and last superpacket
tstart = gammalib.com_time(tjd_start, tics_start)
tstop = gammalib.com_time(tjd_stop, tics_stop)
# Set GTI for TIM
gti = gammalib.GGti(tstart, tstop)
# Get telapse and ontime
tim = gammalib.GCOMTim(timname)
telapse = tim.gti().telapse()
ontime = tim.gti().ontime()
# Build dictionary
tim_dict = {'filename': timname,
'intervals': nrecords,
'obs_id': obs_id,
'dsd_id': dsd_id,
'object': object,
'glon_scz': glon_scz,
'glat_scz': glat_scz,
'date_start': tstart.utc(),
'date_stop': tstop.utc(),
'tjd_start': tjd_start,
'tics_start': tics_start,
'tjd_stop': tjd_stop,
'tics_stop': tics_stop,
'visday': visday,
'vistim': vistim,
'vieday': vieday,
'vietim': vietim,
'tstart': tstart,
'tstop': tstop,
'telapse': telapse,
'ontime': ontime,
'gti': gti,
'quality': quality}
# Return information
return tim_dict
def _get_xml_list(self, evp_list, tim_list, oad_list):
"""
Build XML database from EVP, TIM and OAD database
Parameters
----------
evp_list : list of dict
EVP database
tim_list : list of dict
TIM database
oad_list : list of dict
OAD database
Returns
-------
xml_list : list of dict
XML database
"""
# Initialse XML list
xml_list = []
# Get filtered TIM list
filtered_tim_list = self._filter_tim_list(tim_list)
# Get available phases
phases = self._get_phases()
# Loop over phases
for phase in phases:
# Get available VPs
vps = glob.glob('%s/vp*' % phase)
vps.sort()
# Loop over VPs
for vp in vps:
# Get XML for VP
xml = self._get_xml_for_vp(vp, evp_list, filtered_tim_list, oad_list)
# Append XML to list
if xml is not None:
xml_list.append(xml)
# Sort XML list by start day
xml_list.sort(lambda x,y : cmp(x['tjd_start'], y['tjd_start']))
# Return XML list
return xml_list
def _filter_tim_list(self, tim_list):
"""
Removes all invalid TIMs from TIM database
For a given VP only the TIMs with the maximum quality will be kept. This
is needed since some of the TIM dataset cover periods well beyond a given
VP, and these TIMs are marked with data quality 135. On the other hand,
there are VPs with valid TIMs of data quality 135, hence we cannot simply
filter on data quality.
Parameters
----------
tim_list : list of dict
TIM database
Returns
-------
filtered_tim_list : list of dict
Filtered TIM database
"""
# Initialise filtered TIM list
filtered_tim_list = []
# Get available phases
phases = self._get_phases()
# Loop over phases
for phase in phases:
# Get available VPs
vps = glob.glob('%s/vp*' % phase)
vps.sort()
# Loop over VPs
for vp in vps:
# Get VP name
vpname = os.path.basename(vp)
# Get all TIMs for VP
tims = list(filter(lambda k: k['vp'] == vpname, tim_list))
# Continue if list is empty
if len(tims) < 1:
continue
# Get maximum quality of all TIMs in VP
quality = max([tim['quality'] for tim in tims])
# Get all TIMs for VP with maximum quality
best_tims = list(filter(lambda k: k['quality'] == quality, tims))
# Append these TIMs to the filtered list
filtered_tim_list.extend(best_tims)
# Return
return filtered_tim_list
def _get_xml_for_vp(self, vp, evp_list, tim_list, oad_list):
"""
Build XML database entry for Viewing Period
Parameters
----------
vp : str
Viewing Period directory
evp_list : list of dict
EVP database
tim_list : list of dict
TIM database
oad_list : list of dict
OAD database
Returns
-------
xml_dict : dictionary
XML database entry
"""
# Get database directory
path = self['dbase'].string()
# Set VP name
vpname = os.path.basename(vp)
# Get EVP for VP
evp = self._get_evp(vp, evp_list)
if evp is None:
if vpname == 'vp0225_0' or \
vpname == 'vp0303_5' or \
vpname == 'vp0308_3' or \
vpname == 'vp0311_3' or \
vpname == 'vp0617_2' or \
vpname == 'vp0617_4' or \
vpname == 'vp0617_6' or \
vpname == 'vp0619_5':
self._log_string(gammalib.NORMAL, '--- No EVP file found for "%s due '
'to Reboost". Skip VP.' % (vp))
elif vpname == 'vp0229_3':
self._log_string(gammalib.NORMAL, '--- No EVP file found for "%s due '
'to Perseids". Skip VP.' % (vp))
elif vpname == 'vp0833_7':
self._log_string(gammalib.NORMAL, '--- No EVP file found for "%s due '
'to Leonid Shower". Skip VP.' % (vp))
else:
self._log_string(gammalib.NORMAL, '*** No EVP file found for "%s". '
'Skip VP.' % (vp))
return None
# Get TIM for EVP
tim = self._get_tim(evp, tim_list)
if tim is None:
self._log_string(gammalib.NORMAL, '*** No TIM file found for "%s". '
'Skip VP.' % (vp))
return None
# Get OADs for EVP
oads = self._get_oads(evp, oad_list)
if len(oads) == 0:
self._log_string(gammalib.NORMAL, '*** No OAD files found for "%s". '
'Skip VP.' % (vp))
return None
# Get oadnames and oad qualities
oadnames = [oad['filename'] for oad in oads]
oadqualities = [oad['quality'] for oad in oads]
# Build dictionary
xml_dict = {'vp': vpname,
'evpname': evp['filename'],
'timname': tim['filename'],
'oadnames': oadnames,
'xmlname': '%s/xml/%s.xml' % (path, vpname),
'nevents': evp['nevents'],
'obs_id': evp['obs_id'],
'object': evp['object'],
'glon_scz': evp['glon_scz'],
'glat_scz': evp['glat_scz'],
'date_start': tim['date_start'],
'date_stop': tim['date_stop'],
'tjd_start': tim['tjd_start'],
'tics_start': tim['tics_start'],
'tjd_stop': tim['tjd_stop'],
'tics_stop': tim['tics_stop'],
'evp_tstart': evp['tstart'],
'evp_tstop': evp['tstop'],
'visday': tim['visday'],
'vistim': tim['vistim'],
'vieday': tim['vieday'],
'vietim': tim['vietim'],
'telapse': tim['telapse'],
'ontime': tim['ontime'],
'evp_verno': evp['verno'],
'evp_quality': evp['quality'],
'tim_quality': tim['quality'],
'oad_quality': oadqualities}
# Return XML list
return xml_dict
def _get_evp(self, vp, evp_list):
"""
Get EVP database entry for Viewing Period
Parameters
----------
vp : str
Viewing Period directory
evp_list : list of dict
EVP database
Returns
-------
best_evp : dict
EVP database entry
"""
# Get quality flag
qf = self['quality'].integer()
# Get VP name
vpname = os.path.basename(vp)
# Get all EVPs for VP
evps = list(filter(lambda k: k['vp'] == vpname, evp_list))
# Initialise best EVP
best_verno_evp = None
best_quality_evp = None
best_verno = 0
best_quality = 0
# Initialise choosen flag
choosen = False
# First find EVP with target QF and highest version number
for evp in evps:
if evp['quality'] == qf:
if evp['verno'] > best_verno:
choosen = True
best_evp = evp
best_verno = evp['verno']
# Continue only if no EVP was found
if not choosen:
# Find EVP with highest version number
for evp in evps:
if evp['verno'] > best_verno:
best_verno = evp['verno']
best_verno_evp = evp
# Find EVP with best quality
for evp in evps:
if evp['quality'] > best_quality:
best_quality = evp['quality']
best_quality_evp = evp
# Initialise best EVP with best quality EVP
best_evp = best_quality_evp
# If highest version number is not the EVP with the best quality then
# select the EVP with the highest version number
if best_verno_evp != None and best_quality_evp != None:
if best_verno_evp['filename'] != best_quality_evp['filename']:
if best_quality_evp['verno'] < best_verno:
# Signal issue
self._log_string(gammalib.NORMAL, '*** EVP "%s" with best '
'quality has version %d which is not the '
'highest version %d.' %
(best_quality_evp['filename'],
best_quality_evp['verno'],
best_verno))
# If there are several EVPs with highest version then select
# the one with the best quality
evps = list(filter(lambda k: k['vp'] == vpname and k['verno'] == best_verno, evp_list))
if len(evps) > 1:
self._log_string(gammalib.NORMAL, '--- Several EVPs for %s '
'have highest version' % (vpname))
best = 0
for evp in evps:
if evp['quality'] > best:
best = evp['quality']
best_evp = evp
for evp in evps:
if best_evp['filename'] == evp['filename']:
choose = '+'
choosen = True
else:
choose = ' '
self._log_string(gammalib.NORMAL, ' %s "%s" (verno=%d, '
'quality=%d)' %
(choose,
evp['filename'],
evp['verno'],
evp['quality']))
# ... otherwise use the EVP with the best version number
else:
best_evp = best_verno_evp
choosen = True
self._log_string(gammalib.NORMAL, '--- Choose "%s" (verno=%d, '
'quality=%d)' %
(best_evp['filename'],
best_evp['verno'],
best_evp['quality']))
# Continue only if no file was choosen
if not choosen:
# If there are several EVPs with the best quality then select the one
# with the highest version
evps = list(filter(lambda k: k['vp'] == vpname and k['quality'] == best_quality, evp_list))
if len(evps) > 1:
self._log_string(gammalib.NORMAL, '--- Several EVPs for %s have '
'best quality' % (vpname))
best = 0
for evp in evps:
if evp['verno'] > best:
best = evp['verno']
best_evp = evp
for evp in evps:
if best_evp['filename'] == evp['filename']:
choose = '+'
else:
choose = ' '
self._log_string(gammalib.NORMAL, ' %s "%s" (verno=%d, '
'quality=%d)' %
(choose,
evp['filename'],
evp['verno'],
evp['quality']))
# Return best EVP
return best_evp
def _get_tim(self, evp, tim_list):
"""
Get TIM database entry for EVP database entry
Parameters
----------
evp : dict
EVP dictionary
tim_list : list of dict
TIM database
Returns
-------
best_tim : dict
TIM database entry for EVP database entry
"""
# Initialise maximum overlap
max_overlap = 0.0
min_dtabs = 1.0e30
best_tim = None
# Loop over all TIMs
for tim in tim_list:
# Compute time difference to EVP start time and stop time
dtstart = evp['tstart'] - tim['tstart']
dtstop = evp['tstop'] - tim['tstop']
# Compute absolute time difference
dtabs = abs(dtstart) + abs(dtstop)
# Keep smallest time difference
if dtabs < min_dtabs:
min_dtabs = dtabs
best_tim = tim
# Return best TIM
return best_tim
def _get_oads(self, evp, oad_list):
"""
Get OAD database entry for EVP database entry
Parameters
----------
evp : dict
EVP dictionary
oad_list : list of dict
OAD database
Returns
-------
oads : list of dict
OAD database entries for EVP database entry
"""
# Initialise list of OADs
oads = []
# Loop over all OADs
for oad in oad_list:
# Compute overlap between EVP and OAD
overlap = evp['gti'].overlap(oad['tstart'], oad['tstop'])
# If we have overlap then check if the file already exists
if overlap > 0.0:
# First check if OAD is already in OAD list. If this is the case,
# and the current OAD corresponds to the VP of the EVP, then replace
# the existing OAD by the current OAD since we prefer having the
# OAD in the same folder as the EVP. Otherwise we keep the
exists = False
for i, oad_exist in enumerate(oads):
if oad_exist['dsd_id'] == oad['dsd_id']:
exists = True
if oad['vp'] == evp['vp']:
oads[i] = oad
break
else:
break
# If the OAD does not yet exist then append it now
if not exists:
oads.append(oad)
# Sort OAD list by start day
oads.sort(lambda x,y : cmp(x['tjd_start'], y['tjd_start']))
# Return OADs
return oads
def _check_xml_list(self, xml_list):
"""
Check XML list against COMPASS database
Returns
-------
xml_list : list of dict
XML database with mode and status information
"""
# Load COMPASS database
database = self._get_compass_database()
# Loop over XML list
for xml_dict in xml_list:
# Add mode and status to XML list
xml_dict['mode'] = '???'
xml_dict['status'] = 'unknown'
# Continue only if there are entries
if len(database) > 0:
# Find VP in COMPASS database
compass = None
for entry in database:
if entry['vp'] == xml_dict['vp']:
compass = entry
break
# Signal if VP was not found in COMPASS database
if compass == None:
xml_dict['status'] = 'not found'
self._log_string(gammalib.NORMAL, '--- VP "%s" not found in COMPASS '
'database.' % (xml_dict['vp']))
continue
# Set mode and status
xml_dict['mode'] = compass['mode']
xml_dict['status'] = 'found'
# Check EVP filename
evp = os.path.basename(xml_dict['evpname'])[1:].rstrip('_evp.fits')
if evp != compass['evp']:
self._log_string(gammalib.NORMAL, '--- VP "%s": EVP "%s" in COMPASS '
'database differs from EVP "%s" in XML database.' %
(xml_dict['vp'], compass['evp'], evp))
# Check TIM filename
tim = os.path.basename(xml_dict['timname'])[1:].rstrip('_tim.fits')
if tim != compass['tim']:
self._log_string(gammalib.NORMAL, '--- VP "%s": TIM "%s" in COMPASS '
'database differs from TIM "%s" in XML database.' %
(xml_dict['vp'], compass['tim'], tim))
# Return
return xml_list
def _get_compass_database(self):
"""
Get COMPASS database
Returns
-------
database : list of dict
COMPASS database
"""
# Initialise database
database = []
# Continue only if database was specified
if self['refdata'].is_valid():
# Read ASCII file
f = open(gammalib.expand_env(self['refdata'].filename().url()), 'r')
for line in f:
# Skip comment lines
if line[0:1] == 'C':
continue
# Format VP
vp = ('vp%06.1f' % (float(line[1:6]))).replace('.', '_')
# Extract fields
record = {'vp': vp,
'evp': gammalib.strip_whitespace(line[13:19]),
'tim': gammalib.strip_whitespace(line[21:27]),
'oad': gammalib.strip_whitespace(line[29:35]),
'mode': gammalib.strip_whitespace(line[66:70])}
# Append record to database
database.append(record)
# Return database
return database
def _create_dbase_dirs(self):
"""
Create database directory structure
"""
# Get database directory
path = self['dbase'].string()
# Create database directory
try:
os.makedirs(gammalib.expand_env(path))
except OSError:
self._log_string(gammalib.NORMAL, '--- Directory "%s" exists' % path)
try:
os.makedirs('%s/xml' % gammalib.expand_env(path))
except OSError:
self._log_string(gammalib.NORMAL, '--- Directory "%s/xml" exists' % path)
try:
os.makedirs('%s/tim' % gammalib.expand_env(path))
except OSError:
self._log_string(gammalib.NORMAL, '--- Directory "%s/tim" exists' % path)
# Return
return
def _build_tim_file(self, xml_dict):
"""
Build TIM file for XML database entry
Parameters
----------
xml_dict : dict
XML database entry
"""
# Get database directory
path = self['dbase'].string()
# Get TIM from database
tim = gammalib.GCOMTim(xml_dict['timname'])
# Extract GTIs
gti_heasarc = tim.gti()
# Get tstart and tstop from first and last event
tstart = xml_dict['evp_tstart']
tstop = xml_dict['evp_tstop']
# Kluge for VP vp0411_1 which overlaps with vp0411_5
if xml_dict['vp'] == 'vp0411_1':
tstop = gammalib.com_time(9769, 444782835)
self._log_string(gammalib.NORMAL, '*** Stop date for "%s" changed from %s '
'to %s.' %
(xml_dict['vp'], xml_dict['evp_tstop'].utc(), tstop.utc()))
# Initialise GTI
gti = gammalib.GGti()
# Select GTIs
search_start = True
for i in range(len(gti_heasarc)):
# Case A: search for start
if search_start:
# If event start time is after GTI stop time then skip this GTI
if tstart > gti_heasarc.tstop(i):
continue
# ... otherwise stop searching for start and set first GTI
else:
# Stop searching for start
search_start = False
# Get first GTI
if tstart < gti_heasarc.tstart(i):
t_start = gti_heasarc.tstart(i)
t_stop = gti_heasarc.tstop(i)
else:
t_start = tstart
t_stop = gti_heasarc.tstop(i)
# Append GTI
gti.append(t_start, t_stop)
# Case B: search for stop
else:
# If event stop time after GTI stop time then and this GTI
if tstop > gti_heasarc.tstop(i):
t_start = gti_heasarc.tstart(i)
t_stop = gti_heasarc.tstop(i)
gti.append(t_start, t_stop)
# ... otherwise, if the event stop time is before the GTI start
# time then stop appending GTIs
elif tstop < gti_heasarc.tstart(i):
break
# ... otherwise append last GTI
else:
t_start = gti_heasarc.tstart(i)
t_stop = tstop
gti.append(t_start, t_stop)
break
# Set new GTIs for TIM
tim.gti(gti)
# Set new TIM filename
xml_dict['timname'] = '%s/tim/%s_tim.fits' % (path, xml_dict['vp'])
# Save TIM
tim.save(xml_dict['timname'], True)
# Return
return
def _build_xml_file(self, xml_dict):
"""
Build observation definition XML file for XML database entry
Parameters
----------
xml_dict : dict
XML database entry
"""
# Create XML object
xml = gammalib.GXml()
# Append observation list
obslist = xml.append('observation_list title="observation list"')
# Append observation
obs = obslist.append('observation name="%s" id="%s" instrument="COM"' % \
(xml_dict['object'], xml_dict['vp']))
# Append EVP file
obs.append('parameter name="EVP" file="%s"' % (xml_dict['evpname']))
# Append TIM file
obs.append('parameter name="TIM" file="%s"' % (xml_dict['timname']))
# Append OAD files
for oadname in xml_dict['oadnames']:
obs.append('parameter name="OAD" file="%s"' % (oadname))
# Save XML file
xml.save(xml_dict['xmlname'])
# Return
return
def _check_database(self, xml_list):
"""
Check database
Parameters
----------
xml_list : list of dict
XML database
"""
# Determine number of database entries
nrows = len(xml_list)
# Check that stop dates are after start dates
for i in range(nrows):
tstart = gammalib.GTime()
tstop = gammalib.GTime()
tstart.utc(xml_list[i]['date_start'])
tstop.utc(xml_list[i]['date_stop'])
if tstart > tstop:
self._log_string(gammalib.NORMAL, '*** Start date %s of VP %s later '
'than stop date %s.' %
(xml_list[i]['date_start'],
xml_list[i]['vp'],
xml_list[i]['date_stop']))
# Check that stop dates of VP is before start date of next VP. If this is
# not the case, events may be double counted.
for i in range(nrows-1):
tstart = gammalib.GTime()
tstop = gammalib.GTime()
tstop.utc(xml_list[i]['date_stop'])
tstart.utc(xml_list[i+1]['date_start'])
if tstop >= tstart:
self._log_string(gammalib.NORMAL, '*** Stop date %s of VP %s later '
'than start date %s of VP %s.' %
(xml_list[i]['date_stop'],
xml_list[i]['vp'],
xml_list[i+1]['date_start'],
xml_list[i+1]['vp']))
# Return
return
def _build_database_file(self, evp_list, oad_list, tim_list, xml_list):
"""
Build database file
Parameters
----------
evp_list : list of dict
EVP database
oad_list : list of dict
OAD database
tim_list : list of dict
TIM database
xml_list : list of dict
XML database
"""
# Setup filename
filename = '%s/dbase.fits' % (self['dbase'].string())
# Create FITS file
fits = gammalib.GFits()
# Get tables
evp_table = self._build_evp_table(evp_list)
oad_table = self._build_oad_table(oad_list)
tim_table = self._build_tim_table(tim_list)
xml_table = self._build_xml_table(xml_list)
# Append tables
fits.append(evp_table)
fits.append(oad_table)
fits.append(tim_table)
fits.append(xml_table)
# Save database
fits.saveto(filename, True)
# Close FITS file
fits.close()
# Return
return
def _build_evp_table(self, evp_list):
"""
Build EVP FITS table
Parameters
----------
evp_list : list of dict
EVP database
Returns
-------
table : `~gammalib.GFitsBinTable`
EVP FITS table
"""
# Determine number of rows in table
nrows = len(evp_list)
# Create FITS table columns
col_vp = gammalib.GFitsTableStringCol('VP', nrows, 9)
col_object = gammalib.GFitsTableStringCol('OBJECT', nrows, 20)
col_obs_id = gammalib.GFitsTableStringCol('OBS_ID', nrows, 9)
col_dsd_id = gammalib.GFitsTableStringCol('DSD_ID', nrows, 15)
col_glon_scz = gammalib.GFitsTableFloatCol('GLON_SCZ', nrows)
col_glat_scz = gammalib.GFitsTableFloatCol('GLAT_SCZ', nrows)
col_date_start = gammalib.GFitsTableStringCol('DATE_START', nrows, 20)
col_date_stop = gammalib.GFitsTableStringCol('DATE_STOP', nrows, 20)
col_tjd_start = gammalib.GFitsTableShortCol('TJD_START', nrows)
col_tics_start = gammalib.GFitsTableLongCol('TICS_START', nrows)
col_tjd_stop = gammalib.GFitsTableShortCol('TJD_STOP', nrows)
col_tics_stop = gammalib.GFitsTableLongCol('TICS_STOP', nrows)
col_visday = gammalib.GFitsTableShortCol('VISDAY', nrows)
col_vistim = gammalib.GFitsTableLongCol('VISTIM', nrows)
col_vieday = gammalib.GFitsTableShortCol('VIEDAY', nrows)
col_vietim = gammalib.GFitsTableLongCol('VIETIM', nrows)
col_verno = gammalib.GFitsTableShortCol('VERNO', nrows)
col_quality = gammalib.GFitsTableShortCol('QUALITY', nrows)
col_evp = gammalib.GFitsTableStringCol('EVP', nrows, 60)
col_nevents = gammalib.GFitsTableLongCol('NEVENTS', nrows)
# Set column units
col_glon_scz.unit('deg')
col_glat_scz.unit('deg')
col_tjd_start.unit('days')
col_tics_start.unit('0.000125 s')
col_tjd_stop.unit('days')
col_tics_stop.unit('0.000125 s')
col_visday.unit('days')
col_vistim.unit('0.000125 s')
col_vieday.unit('days')
col_vietim.unit('0.000125 s')
# Fill columns
for i, evp_record in enumerate(evp_list):
col_vp[i] = evp_record['vp']
col_object[i] = evp_record['object']
col_obs_id[i] = '%.1f' % evp_record['obs_id']
col_dsd_id[i] = evp_record['dsd_id']
col_glon_scz[i] = evp_record['glon_scz']
col_glat_scz[i] = evp_record['glat_scz']
col_date_start[i] = evp_record['date_start']
col_date_stop[i] = evp_record['date_stop']
col_tjd_start[i] = evp_record['tjd_start']
col_tics_start[i] = evp_record['tics_start']
col_tjd_stop[i] = evp_record['tjd_stop']
col_tics_stop[i] = evp_record['tics_stop']
col_visday[i] = evp_record['visday']
col_vistim[i] = evp_record['vistim']
col_vieday[i] = evp_record['vieday']
col_vietim[i] = evp_record['vietim']
col_verno[i] = evp_record['verno']
col_quality[i] = evp_record['quality']
col_evp[i] = evp_record['filename']
col_nevents[i] = evp_record['nevents']
# Create FITS table
table = gammalib.GFitsBinTable()
# Append columns to table
table.append(col_vp)
table.append(col_object)
table.append(col_obs_id)
table.append(col_dsd_id)
table.append(col_glon_scz)
table.append(col_glat_scz)
table.append(col_date_start)
table.append(col_date_stop)
table.append(col_tjd_start)
table.append(col_tics_start)
table.append(col_tjd_stop)
table.append(col_tics_stop)
table.append(col_visday)
table.append(col_vistim)
table.append(col_vieday)
table.append(col_vietim)
table.append(col_verno)
table.append(col_quality)
table.append(col_evp)
table.append(col_nevents)
# Set extension name
table.extname('EVP')
# Return table
return table
def _build_oad_table(self, oad_list):
"""
Build OAD FITS table
Parameters
----------
oad_list : list of dict
OAD database
Returns
-------
table : `~gammalib.GFitsBinTable`
OAD FITS table
"""
# Determine number of rows in table
nrows = len(oad_list)
# Create FITS table columns
col_vp = gammalib.GFitsTableStringCol('VP', nrows, 9)
col_object = gammalib.GFitsTableStringCol('OBJECT', nrows, 20)
col_obs_id = gammalib.GFitsTableStringCol('OBS_ID', nrows, 9)
col_dsd_id = gammalib.GFitsTableStringCol('DSD_ID', nrows, 15)
col_glon_scz = gammalib.GFitsTableFloatCol('GLON_SCZ', nrows)
col_glat_scz = gammalib.GFitsTableFloatCol('GLAT_SCZ', nrows)
col_date_start = gammalib.GFitsTableStringCol('DATE_START', nrows, 20)
col_date_stop = gammalib.GFitsTableStringCol('DATE_STOP', nrows, 20)
col_tjd_start = gammalib.GFitsTableShortCol('TJD_START', nrows)
col_tics_start = gammalib.GFitsTableLongCol('TICS_START', nrows)
col_tjd_stop = gammalib.GFitsTableShortCol('TJD_STOP', nrows)
col_tics_stop = gammalib.GFitsTableLongCol('TICS_STOP', nrows)
col_quality = gammalib.GFitsTableShortCol('QUALITY', nrows)
col_oad = gammalib.GFitsTableStringCol('OAD', nrows, 60)
col_superpackets = gammalib.GFitsTableLongCol('SUPERPACKETS', nrows)
# Set column units
col_glon_scz.unit('deg')
col_glat_scz.unit('deg')
col_tjd_start.unit('days')
col_tics_start.unit('0.000125 s')
col_tjd_stop.unit('days')
col_tics_stop.unit('0.000125 s')
# Fill columns
for i, oad_record in enumerate(oad_list):
col_vp[i] = oad_record['vp']
col_object[i] = oad_record['object']
col_obs_id[i] = '%.1f' % oad_record['obs_id']
col_dsd_id[i] = oad_record['dsd_id']
col_glon_scz[i] = oad_record['glon_scz']
col_glat_scz[i] = oad_record['glat_scz']
col_date_start[i] = oad_record['date_start']
col_date_stop[i] = oad_record['date_stop']
col_tjd_start[i] = oad_record['tjd_start']
col_tics_start[i] = oad_record['tics_start']
col_tjd_stop[i] = oad_record['tjd_stop']
col_tics_stop[i] = oad_record['tics_stop']
col_quality[i] = oad_record['quality']
col_oad[i] = oad_record['filename']
col_superpackets[i] = oad_record['superpackets']
# Create FITS table
table = gammalib.GFitsBinTable()
# Append columns to table
table.append(col_vp)
table.append(col_object)
table.append(col_obs_id)
table.append(col_dsd_id)
table.append(col_glon_scz)
table.append(col_glat_scz)
table.append(col_date_start)
table.append(col_date_stop)
table.append(col_tjd_start)
table.append(col_tics_start)
table.append(col_tjd_stop)
table.append(col_tics_stop)
table.append(col_quality)
table.append(col_oad)
table.append(col_superpackets)
# Set extension name
table.extname('OAD')
# Return table
return table
def _build_tim_table(self, tim_list):
"""
Build TIM FITS table
Parameters
----------
tim_list : list of dict
TIM database
Returns
-------
table : `~gammalib.GFitsBinTable`
TIM FITS table
"""
# Determine number of rows in table
nrows = len(tim_list)
# Create FITS table columns
col_vp = gammalib.GFitsTableStringCol('VP', nrows, 9)
col_object = gammalib.GFitsTableStringCol('OBJECT', nrows, 20)
col_obs_id = gammalib.GFitsTableStringCol('OBS_ID', nrows, 9)
col_dsd_id = gammalib.GFitsTableStringCol('DSD_ID', nrows, 15)
col_glon_scz = gammalib.GFitsTableFloatCol('GLON_SCZ', nrows)
col_glat_scz = gammalib.GFitsTableFloatCol('GLAT_SCZ', nrows)
col_date_start = gammalib.GFitsTableStringCol('DATE_START', nrows, 20)
col_date_stop = gammalib.GFitsTableStringCol('DATE_STOP', nrows, 20)
col_tjd_start = gammalib.GFitsTableShortCol('TJD_START', nrows)
col_tics_start = gammalib.GFitsTableLongCol('TICS_START', nrows)
col_tjd_stop = gammalib.GFitsTableShortCol('TJD_STOP', nrows)
col_tics_stop = gammalib.GFitsTableLongCol('TICS_STOP', nrows)
col_telapse = gammalib.GFitsTableDoubleCol('TELAPSE', nrows)
col_ontime = gammalib.GFitsTableDoubleCol('ONTIME', nrows)
col_quality = gammalib.GFitsTableShortCol('QUALITY', nrows)
col_tim = gammalib.GFitsTableStringCol('TIM', nrows, 60)
col_intervals = gammalib.GFitsTableLongCol('INTERVALS', nrows)
# Set column units
col_glon_scz.unit('deg')
col_glat_scz.unit('deg')
col_tjd_start.unit('days')
col_tics_start.unit('0.000125 s')
col_tjd_stop.unit('days')
col_tics_stop.unit('0.000125 s')
col_telapse.unit('s')
col_ontime.unit('s')
# Fill columns
for i, tim_record in enumerate(tim_list):
col_vp[i] = tim_record['vp']
col_object[i] = tim_record['object']
col_obs_id[i] = '%.1f' % tim_record['obs_id']
col_dsd_id[i] = tim_record['dsd_id']
col_glon_scz[i] = tim_record['glon_scz']
col_glat_scz[i] = tim_record['glat_scz']
col_date_start[i] = tim_record['date_start']
col_date_stop[i] = tim_record['date_stop']
col_tjd_start[i] = tim_record['tjd_start']
col_tics_start[i] = tim_record['tics_start']
col_tjd_stop[i] = tim_record['tjd_stop']
col_tics_stop[i] = tim_record['tics_stop']
col_telapse[i] = tim_record['telapse']
col_ontime[i] = tim_record['ontime']
col_quality[i] = tim_record['quality']
col_tim[i] = tim_record['filename']
col_intervals[i] = tim_record['intervals']
# Create FITS table
table = gammalib.GFitsBinTable()
# Append columns to table
table.append(col_vp)
table.append(col_object)
table.append(col_obs_id)
table.append(col_dsd_id)
table.append(col_glon_scz)
table.append(col_glat_scz)
table.append(col_date_start)
table.append(col_date_stop)
table.append(col_tjd_start)
table.append(col_tics_start)
table.append(col_tjd_stop)
table.append(col_tics_stop)
table.append(col_telapse)
table.append(col_ontime)
table.append(col_quality)
table.append(col_tim)
table.append(col_intervals)
# Set extension name
table.extname('TIM')
# Return table
return table
def _build_xml_table(self, xml_list):
"""
Build XML FITS table
Parameters
----------
xml_list : list of dict
XML database
Returns
-------
table : `~gammalib.GFitsBinTable`
XML FITS table
"""
# Determine number of rows in table
nrows = len(xml_list)
# Create FITS table columns
col_vp = gammalib.GFitsTableStringCol('VP', nrows, 9)
col_object = gammalib.GFitsTableStringCol('OBJECT', nrows, 20)
col_obs_id = gammalib.GFitsTableStringCol('OBS_ID', nrows, 9)
col_glon_scz = gammalib.GFitsTableFloatCol('GLON_SCZ', nrows)
col_glat_scz = gammalib.GFitsTableFloatCol('GLAT_SCZ', nrows)
col_date_start = gammalib.GFitsTableStringCol('DATE_START', nrows, 20)
col_date_stop = gammalib.GFitsTableStringCol('DATE_STOP', nrows, 20)
col_tjd_start = gammalib.GFitsTableShortCol('TJD_START', nrows)
col_tics_start = gammalib.GFitsTableLongCol('TICS_START', nrows)
col_tjd_stop = gammalib.GFitsTableShortCol('TJD_STOP', nrows)
col_tics_stop = gammalib.GFitsTableLongCol('TICS_STOP', nrows)
col_visday = gammalib.GFitsTableShortCol('VISDAY', nrows)
col_vistim = gammalib.GFitsTableLongCol('VISTIM', nrows)
col_vieday = gammalib.GFitsTableShortCol('VIEDAY', nrows)
col_vietim = gammalib.GFitsTableLongCol('VIETIM', nrows)
col_telapse = gammalib.GFitsTableDoubleCol('TELAPSE', nrows)
col_ontime = gammalib.GFitsTableDoubleCol('ONTIME', nrows)
col_evp_verno = gammalib.GFitsTableShortCol('EVP_VERNO', nrows)
col_evp_quality = gammalib.GFitsTableShortCol('EVP_QUALITY', nrows)
col_tim_quality = gammalib.GFitsTableShortCol('TIM_QUALITY', nrows)
col_oad_quality = gammalib.GFitsTableShortCol('OAD_QUALITY', nrows, 43)
col_xml = gammalib.GFitsTableStringCol('XML', nrows, 60)
col_evp = gammalib.GFitsTableStringCol('EVP', nrows, 60)
col_tim = gammalib.GFitsTableStringCol('TIM', nrows, 60)
col_oad = gammalib.GFitsTableStringCol('OAD', nrows, 60, 43)
col_nevents = gammalib.GFitsTableLongCol('NEVENTS', nrows)
col_model = gammalib.GFitsTableStringCol('MODE', nrows, 8)
# Set column units
col_glon_scz.unit('deg')
col_glat_scz.unit('deg')
col_tjd_start.unit('days')
col_tics_start.unit('0.000125 s')
col_tjd_stop.unit('days')
col_tics_stop.unit('0.000125 s')
col_visday.unit('days')
col_vistim.unit('0.000125 s')
col_vieday.unit('days')
col_vietim.unit('0.000125 s')
col_telapse.unit('s')
col_ontime.unit('s')
# Fill columns
for i, xml_record in enumerate(xml_list):
col_vp[i] = xml_record['vp']
col_object[i] = xml_record['object']
col_obs_id[i] = '%.1f' % xml_record['obs_id']
col_glon_scz[i] = xml_record['glon_scz']
col_glat_scz[i] = xml_record['glat_scz']
col_date_start[i] = xml_record['date_start']
col_date_stop[i] = xml_record['date_stop']
col_tjd_start[i] = xml_record['tjd_start']
col_tics_start[i] = xml_record['tics_start']
col_tjd_stop[i] = xml_record['tjd_stop']
col_tics_stop[i] = xml_record['tics_stop']
col_visday[i] = xml_record['visday']
col_vistim[i] = xml_record['vistim']
col_vieday[i] = xml_record['vieday']
col_vietim[i] = xml_record['vietim']
col_telapse[i] = xml_record['telapse']
col_ontime[i] = xml_record['ontime']
col_evp_verno[i] = xml_record['evp_verno']
col_evp_quality[i] = xml_record['evp_quality']
col_tim_quality[i] = xml_record['tim_quality']
col_xml[i] = xml_record['xmlname']
col_evp[i] = xml_record['evpname']
col_tim[i] = xml_record['timname']
col_nevents[i] = xml_record['nevents']
for k, oad_quality in enumerate(xml_record['oad_quality']):
col_oad_quality[i,k] = oad_quality
for k, oadname in enumerate(xml_record['oadnames']):
col_oad[i,k] = oadname
mode = 'UNKNOWN'
if xml_record['mode'] == 'STD':
mode = 'STANDARD'
elif xml_record['mode'] == 'S80':
mode = 'SOLAR80'
col_model[i] = mode
# Create FITS table
table = gammalib.GFitsBinTable()
# Append columns to table
table.append(col_vp)
table.append(col_object)
table.append(col_obs_id)
table.append(col_glon_scz)
table.append(col_glat_scz)
table.append(col_date_start)
table.append(col_date_stop)
table.append(col_tjd_start)
table.append(col_tics_start)
table.append(col_tjd_stop)
table.append(col_tics_stop)
table.append(col_visday)
table.append(col_vistim)
table.append(col_vieday)
table.append(col_vietim)
table.append(col_telapse)
table.append(col_ontime)
table.append(col_nevents)
table.append(col_evp_verno)
table.append(col_evp_quality)
table.append(col_tim_quality)
table.append(col_oad_quality)
table.append(col_xml)
table.append(col_evp)
table.append(col_tim)
table.append(col_oad)
# Set extension name
table.extname('XML')
# Return table
return table
# Public methods
def process(self):
"""
Process the script
"""
# Get parameters
self._get_parameters()
# Optionally download COMPTEL HEASARC archive
if self['download'].boolean():
self._download()
# Log header
self._log_header1(gammalib.TERSE, 'Get list of EVP files')
# Get EVP list
self._evp_list = self._get_evp_list()
# Log header
self._log_header1(gammalib.TERSE, 'Get list of OAD files')
# Get OAD list
self._oad_list = self._get_oad_list()
# Log header
self._log_header1(gammalib.TERSE, 'Get list of TIM files')
# Get TIM list
self._tim_list = self._get_tim_list()
# Log header
self._log_header1(gammalib.TERSE, 'Generate list of XML files')
# Get XML list
xml_list = self._get_xml_list(self._evp_list, self._tim_list, self._oad_list)
# Log header
self._log_header1(gammalib.TERSE, 'Compare with COMPASS database')
# Check XML list
self._xml_list = self._check_xml_list(xml_list)
# Return
return
def save(self):
"""
Save database file
"""
# Write header
self._log_header1(gammalib.TERSE, 'Save database')
# Create database directory structure
self._create_dbase_dirs()
# Generate TIM and XML files
for xml in self._xml_list:
self._build_tim_file(xml)
self._build_xml_file(xml)
# Check database
self._check_database(self._xml_list)
# Build database file
self._build_database_file(self._evp_list, self._oad_list,
self._tim_list, self._xml_list)
# Return
return
# ======================== #
# Main routine entry point #
# ======================== #
if __name__ == '__main__':
# Create instance of application
app = comgendb(sys.argv)
# Execute application
app.execute()