Karim Sabri / ctools

Browse Code »

Commit d0da27ce27a9ca64163e30f22ec47b1906e6090a

Authored by Luigi Tibaldo 2020-01-23 16:45:09 +0100

1 parent accdc3ba

added new empty script

Inline Side-by-side

Showing 8 changed files with 1124 additions and 0 deletions

cscripts/Makefile.am

View file @d0da27c

1	1	#############################################################################
	2	+
2	3	# Makefile for cscripts scripts #
	4	+
3	5	# ------------------------------------------------------------------------- #
	6	+
4	7	# Copyright (C) 2016-2019 Juergen Knoedlseder #
	8	+
5	9	# ------------------------------------------------------------------------- #
	10	+
6	11	# #
	12	+
7	13	# This program is free software: you can redistribute it and/or modify #
	14	+
8	15	# it under the terms of the GNU General Public License as published by #
	16	+
9	17	# the Free Software Foundation, either version 3 of the License, or #
	18	+
10	19	# (at your option) any later version. #
	20	+
11	21	# #
	22	+
12	23	# This program is distributed in the hope that it will be useful, #
	24	+
13	25	# but WITHOUT ANY WARRANTY; without even the implied warranty of #
	26	+
14	27	# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the #
	28	+
15	29	# GNU General Public License for more details. #
	30	+
16	31	# #
	32	+
17	33	# You should have received a copy of the GNU General Public License #
	34	+
18	35	# along with this program. If not, see <http://www.gnu.org/licenses/>. #
	36	+
19	37	# #
	38	+
20	39	#############################################################################
21	40
	41	+
	42	+
22	43	# Scripts to be distributed in $(pyexecdir)/cscripts
	44	+
23	45	pythonscripts = $(top_builddir)/cscripts/__init__.py \
	46	+
24	47	$(srcdir)/csbkgmodel.py \
	48	+
25	49	$(srcdir)/cscaldb.py \
	50	+
26	51	$(srcdir)/csebins.py \
	52	+
27	53	$(srcdir)/csinfo.py \
	54	+
28	55	$(srcdir)/cslightcrv.py \
	56	+
29	57	$(srcdir)/csmodelinfo.py \
	58	+
30	59	$(srcdir)/csmodelmerge.py \
	60	+
31	61	$(srcdir)/csmodelselect.py \
	62	+
32	63	$(srcdir)/csmodelsois.py \
	64	+
33	65	$(srcdir)/csobs2caldb.py \
	66	+
34	67	$(srcdir)/csobsdef.py \
	68	+
35	69	$(srcdir)/csobsinfo.py \
	70	+
36	71	$(srcdir)/csobsselect.py \
	72	+
37	73	$(srcdir)/csphagen.py \
	74	+
38	75	$(srcdir)/csphasecrv.py \
	76	+
39	77	$(srcdir)/cspull.py \
	78	+
40	79	$(srcdir)/csresmap.py \
	80	+
41	81	$(srcdir)/csresspec.py \
	82	+
42	83	$(srcdir)/csroot2caldb.py \
	84	+
43	85	$(srcdir)/cssens.py \
	86	+
44	87	$(srcdir)/csspec.py \
	88	+
45	89	$(srcdir)/cssrcdetect.py \
	90	+
46	91	$(srcdir)/cstsdist.py \
	92	+
47	93	$(srcdir)/cstsmapmerge.py \
	94	+
48	95	$(srcdir)/cstsmapsplit.py \
	96	+
49	97	$(srcdir)/csviscube.py \
	98	+
	99	+ $(srcdir)/csscs.py \
50	100	$(srcdir)/csworkflow.py \
	101	+
51	102	$(srcdir)/csfindobs.py \
	103	+
52	104	$(srcdir)/csiactcopy.py \
	105	+
53	106	$(srcdir)/csiactdata.py \
	107	+
54	108	$(srcdir)/csiactobs.py \
	109	+
55	110	$(srcdir)/obsutils.py \
	111	+
56	112	$(srcdir)/modutils.py \
	113	+
57	114	$(srcdir)/calutils.py \
	115	+
58	116	$(srcdir)/ioutils.py \
	117	+
59	118	$(srcdir)/mputils.py
60	119
	120	+
	121	+
61	122	# Parfiles to be distributed in $(prefix)/syspfiles
	123	+
62	124	parfiles = $(srcdir)/csbkgmodel.par \
	125	+
63	126	$(srcdir)/cscaldb.par \
	127	+
64	128	$(srcdir)/csebins.par \
	129	+
65	130	$(srcdir)/cslightcrv.par \
	131	+
66	132	$(srcdir)/csmodelinfo.par \
	133	+
67	134	$(srcdir)/csmodelmerge.par \
	135	+
68	136	$(srcdir)/csmodelselect.par \
	137	+
69	138	$(srcdir)/csmodelsois.par \
	139	+
70	140	$(srcdir)/csobs2caldb.par \
	141	+
71	142	$(srcdir)/csobsdef.par \
	143	+
72	144	$(srcdir)/csobsinfo.par \
	145	+
73	146	$(srcdir)/csobsselect.par \
	147	+
74	148	$(srcdir)/csphagen.par \
	149	+
75	150	$(srcdir)/csphasecrv.par \
	151	+
76	152	$(srcdir)/cspull.par \
	153	+
77	154	$(srcdir)/csresmap.par \
	155	+
78	156	$(srcdir)/csresspec.par \
	157	+
79	158	$(srcdir)/csroot2caldb.par \
	159	+
80	160	$(srcdir)/cssens.par \
	161	+
81	162	$(srcdir)/csspec.par \
	163	+
82	164	$(srcdir)/cssrcdetect.par \
	165	+
83	166	$(srcdir)/cstsdist.par \
	167	+
84	168	$(srcdir)/cstsmapmerge.par \
	169	+
85	170	$(srcdir)/cstsmapsplit.par \
	171	+
86	172	$(srcdir)/csviscube.par \
	173	+
	174	+ $(srcdir)/csscs.par \
87	175	$(srcdir)/csworkflow.par \
	176	+
88	177	$(srcdir)/csfindobs.par \
	178	+
89	179	$(srcdir)/csiactcopy.par \
	180	+
90	181	$(srcdir)/csiactdata.par \
	182	+
91	183	$(srcdir)/csiactobs.par
92	184
	185	+
	186	+
93	187	# Scripts for which symbolic links will be created in bindir
	188	+
94	189	linkscripts = csbkgmodel \
	190	+
95	191	cscaldb \
	192	+
96	193	csebins \
	194	+
97	195	csinfo \
	196	+
98	197	cslightcrv \
	198	+
99	199	csmodelinfo \
	200	+
100	201	csmodelmerge \
	202	+
101	203	csmodelselect \
	204	+
102	205	csmodelsois \
	206	+
103	207	csobs2caldb \
	208	+
104	209	csobsdef \
	210	+
105	211	csobsinfo \
	212	+
106	213	csobsselect \
	214	+
107	215	csphagen \
	216	+
108	217	csphasecrv \
	218	+
109	219	cspull \
	220	+
110	221	csresmap \
	222	+
111	223	csresspec \
	224	+
112	225	csroot2caldb \
	226	+
113	227	cssens \
	228	+
114	229	csspec \
	230	+
115	231	cssrcdetect \
	232	+
116	233	cstsdist \
	234	+
117	235	cstsmapmerge \
	236	+
118	237	cstsmapsplit \
	238	+
119	239	csviscube \
	240	+
	241	+ csscs \
120	242	csworkflow \
	243	+
121	244	csfindobs \
	245	+
122	246	csiactcopy \
	247	+
123	248	csiactdata \
	249	+
124	250	csiactobs
125	251
	252	+
	253	+
126	254	# Test scripts to be distributed in $(pyexecdir)/cscripts/tests
	255	+
127	256	testscripts = $(srcdir)/tests/__init__.py \
	257	+
128	258	$(top_srcdir)/test/testing.py \
	259	+
129	260	$(top_srcdir)/test/test_python_cscripts.py \
	261	+
130	262	$(top_srcdir)/test/test_cscript.py \
	263	+
131	264	$(top_srcdir)/test/test_cscaldb.py \
	265	+
132	266	$(top_srcdir)/test/test_csbkgmodel.py \
	267	+
133	268	$(top_srcdir)/test/test_csebins.py \
	269	+
134	270	$(top_srcdir)/test/test_csfindobs.py \
	271	+
135	272	$(top_srcdir)/test/test_csinfo.py \
	273	+
136	274	$(top_srcdir)/test/test_cslightcrv.py \
	275	+
137	276	$(top_srcdir)/test/test_csmodelinfo.py \
	277	+
138	278	$(top_srcdir)/test/test_csmodelmerge.py \
	279	+
139	280	$(top_srcdir)/test/test_csmodelselect.py \
	281	+
140	282	$(top_srcdir)/test/test_csmodelsois.py \
	283	+
141	284	$(top_srcdir)/test/test_csobs2caldb.py \
	285	+
142	286	$(top_srcdir)/test/test_csobsdef.py \
	287	+
143	288	$(top_srcdir)/test/test_csobsinfo.py \
	289	+
144	290	$(top_srcdir)/test/test_csobsselect.py \
	291	+
145	292	$(top_srcdir)/test/test_csphagen.py \
	293	+
146	294	$(top_srcdir)/test/test_csphasecrv.py \
	295	+
147	296	$(top_srcdir)/test/test_cspull.py \
	297	+
148	298	$(top_srcdir)/test/test_csresmap.py \
	299	+
149	300	$(top_srcdir)/test/test_csresspec.py \
	301	+
150	302	$(top_srcdir)/test/test_csroot2caldb.py \
	303	+
151	304	$(top_srcdir)/test/test_cssens.py \
	305	+
152	306	$(top_srcdir)/test/test_csspec.py \
	307	+
153	308	$(top_srcdir)/test/test_cssrcdetect.py \
	309	+
154	310	$(top_srcdir)/test/test_cstsdist.py \
	311	+
155	312	$(top_srcdir)/test/test_cstsmapmerge.py \
	313	+
156	314	$(top_srcdir)/test/test_cstsmapsplit.py \
	315	+
157	316	$(top_srcdir)/test/test_csviscube.py \
	317	+
	318	+ $(top_srcdir)/test/test_csscs.py \
158	319	$(top_srcdir)/test/test_csworkflow.py \
	320	+
159	321	$(top_srcdir)/test/test_obsutils.py \
	322	+
160	323	$(top_srcdir)/test/test_mputils.py \
	324	+
161	325	$(top_srcdir)/test/test_csiactcopy.py \
	326	+
162	327	$(top_srcdir)/test/test_csiactdata.py \
	328	+
163	329	$(top_srcdir)/test/test_csiactobs.py
164	330
	331	+
	332	+
165	333	# Test data to be distributed in $(pyexecdir)/cscripts/tests/data
	334	+
166	335	testdata = $(top_srcdir)/test/data/crab.xml \
	336	+
167	337	$(top_srcdir)/test/data/obs_unbinned.xml \
	338	+
168	339	$(top_srcdir)/test/data/obs_unbinned_two.xml \
	340	+
169	341	$(top_srcdir)/test/data/obs_stacked.xml \
	342	+
170	343	$(top_srcdir)/test/data/obs_stacked_two.xml \
	344	+
171	345	$(top_srcdir)/test/data/crab_events.fits \
	346	+
172	347	$(top_srcdir)/test/data/crab_cntmap.fits \
	348	+
173	349	$(top_srcdir)/test/data/crab_expcube.fits.gz \
	350	+
174	351	$(top_srcdir)/test/data/crab_psfcube.fits.gz \
	352	+
175	353	$(top_srcdir)/test/data/crab_edispcube.fits.gz \
	354	+
176	355	$(top_srcdir)/test/data/crab_bkgcube.fits.gz \
	356	+
177	357	$(top_srcdir)/test/data/crab_onoff.xml \
	358	+
178	359	$(top_srcdir)/test/data/crab_offaxis1.fits.gz \
	360	+
179	361	$(top_srcdir)/test/data/crab_offaxis2.fits.gz \
	362	+
180	363	$(top_srcdir)/test/data/crab_exclusion.fits.gz \
	364	+
181	365	$(top_srcdir)/test/data/crab_src_reg.reg \
	366	+
182	367	$(top_srcdir)/test/data/crab_bkg_reg.reg \
	368	+
183	369	$(top_srcdir)/test/data/tsmap_0.fits \
	370	+
184	371	$(top_srcdir)/test/data/tsmap_1.fits \
	372	+
185	373	$(top_srcdir)/test/data/exclusion.reg \
	374	+
186	375	$(top_srcdir)/test/data/pntdef_minimal.dat \
	376	+
187	377	$(top_srcdir)/test/data/pntdef_maximal.dat \
	378	+
188	379	$(top_srcdir)/test/data/models.txt \
	380	+
189	381	$(top_srcdir)/test/data/tsmaps.txt \
	382	+
190	383	$(top_srcdir)/test/data/model_cube_background1.xml \
	384	+
191	385	$(top_srcdir)/test/data/model_cube_background2.xml \
	386	+
192	387	$(top_srcdir)/test/data/crab_bkgcube.xml \
	388	+
193	389	$(top_srcdir)/test/data/irf.root \
	390	+
194	391	$(top_srcdir)/test/data/irf_file.fits.gz \
	392	+
195	393	$(top_srcdir)/test/data/workflow.xml \
	394	+
196	395	$(top_srcdir)/test/data/butterfly.txt \
	396	+
197	397	$(top_srcdir)/test/data/pha.fits \
	398	+
198	399	$(top_srcdir)/test/data/pha_channels.fits \
	400	+
199	401	$(top_srcdir)/test/data/pull.dat \
	402	+
200	403	$(top_srcdir)/test/data/sensitivity.dat \
	404	+
201	405	$(top_srcdir)/test/data/sensitivity_integral.dat \
	406	+
202	407	$(top_srcdir)/test/data/skymap.fits \
	408	+
203	409	$(top_srcdir)/test/data/spectrum.fits \
	410	+
204	411	$(top_srcdir)/test/data/residual.fits \
	412	+
205	413	$(top_srcdir)/test/data/residual_onoff.fits \
	414	+
206	415	$(top_srcdir)/test/data/lightcurve.fits \
	416	+
207	417	$(top_srcdir)/test/data/ts.dat \
	418	+
208	419	$(top_srcdir)/test/data/models_spatial.xml \
	420	+
209	421	$(top_srcdir)/test/data/models_spectral.xml \
	422	+
210	423	$(top_srcdir)/test/data/model_filefunction.txt \
	424	+
211	425	$(top_srcdir)/test/data/model_map.fits.gz \
	426	+
212	427	$(top_srcdir)/test/data/model_mapcube.fits.gz \
	428	+
213	429	$(top_srcdir)/test/data/iact_runlist.dat \
	430	+
214	431	$(top_srcdir)/test/data/iact_runlist_1.dat \
	432	+
215	433	$(top_srcdir)/test/data/iact_runlist_2.dat \
	434	+
216	435	$(top_srcdir)/test/data/model_temporal_phasecurve.xml \
	436	+
217	437	$(top_srcdir)/test/data/model_temporal_phasecurve.fits \
	438	+
218	439	$(top_srcdir)/test/data/phased_events.fits.gz \
	440	+
219	441	$(top_srcdir)/test/data/onoff_arf.fits.gz \
	442	+
220	443	$(top_srcdir)/test/data/onoff_arf1.fits.gz \
	444	+
221	445	$(top_srcdir)/test/data/onoff_arf2.fits.gz \
	446	+
222	447	$(top_srcdir)/test/data/onoff_model.xml \
	448	+
223	449	$(top_srcdir)/test/data/onoff_obs.xml \
	450	+
224	451	$(top_srcdir)/test/data/onoff_obs1.xml \
	452	+
225	453	$(top_srcdir)/test/data/onoff_obs2.xml \
	454	+
226	455	$(top_srcdir)/test/data/onoff_obs_stacked.xml \
	456	+
227	457	$(top_srcdir)/test/data/onoff_pha_off.fits.gz \
	458	+
228	459	$(top_srcdir)/test/data/onoff_pha_off1.fits.gz \
	460	+
229	461	$(top_srcdir)/test/data/onoff_pha_off2.fits.gz \
	462	+
230	463	$(top_srcdir)/test/data/onoff_pha_on.fits.gz \
	464	+
231	465	$(top_srcdir)/test/data/onoff_pha_on1.fits.gz \
	466	+
232	467	$(top_srcdir)/test/data/onoff_pha_on2.fits.gz \
	468	+
233	469	$(top_srcdir)/test/data/onoff_rmf.fits.gz \
	470	+
234	471	$(top_srcdir)/test/data/onoff_rmf1.fits.gz \
	472	+
235	473	$(top_srcdir)/test/data/onoff_rmf2.fits.gz \
	474	+
236	475	$(top_srcdir)/test/data/model_crab_radialacceptance.xml \
	476	+
237	477	$(top_srcdir)/test/data/sigdist_map.fits.gz \
	478	+
238	479	$(top_srcdir)/test/data/variability.fits.gz \
	480	+
239	481	$(top_srcdir)/test/data/viscube.fits.gz \
	482	+
240	483	$(top_srcdir)/test/data/hess_bkg_lookup.fits
241	484
	485	+
	486	+
242	487	# Test data to be distributed in $(pyexecdir)/cscripts/tests/data/iactdata
	488	+
243	489	testiactdata = $(top_srcdir)/test/data/iactdata/hdu-index.fits.gz \
	490	+
244	491	$(top_srcdir)/test/data/iactdata/master.json \
	492	+
245	493	$(top_srcdir)/test/data/iactdata/obs-index.fits.gz
246	494
	495	+
	496	+
247	497	# Test data to be distributed in $(pyexecdir)/cscripts/tests/data/iactdata/events
	498	+
248	499	testiactevents = $(top_srcdir)/test/data/iactdata/events/irf_file.fits.gz \
	500	+
249	501	$(top_srcdir)/test/data/iactdata/events/events_0.fits.gz \
	502	+
250	503	$(top_srcdir)/test/data/iactdata/events/events_1.fits.gz \
	504	+
251	505	$(top_srcdir)/test/data/iactdata/events/events_2.fits.gz \
	506	+
252	507	$(top_srcdir)/test/data/iactdata/events/events_3.fits.gz \
	508	+
253	509	$(top_srcdir)/test/data/iactdata/events/events_4.fits.gz \
	510	+
254	511	$(top_srcdir)/test/data/iactdata/events/events_5.fits.gz \
	512	+
255	513	$(top_srcdir)/test/data/iactdata/events/events_6.fits.gz \
	514	+
256	515	$(top_srcdir)/test/data/iactdata/events/events_7.fits.gz \
	516	+
257	517	$(top_srcdir)/test/data/iactdata/events/events_8.fits.gz
258	518
	519	+
	520	+
259	521	# Install scripts, parfiles, test scripts and test data. Note that we don't
	522	+
260	523	# need to prepend $(DESTDIR) here (not fully clear why, but that's the way
	524	+
261	525	# it is)
	526	+
262	527	binscriptsdir = $(bindir)
	528	+
263	529	binscripts_DATA = $(binscripts)
	530	+
264	531	pythonscriptsdir = $(pyexecdir)/cscripts
	532	+
265	533	pythonscripts_DATA = $(pythonscripts)
	534	+
266	535	pfilesdir = $(prefix)/syspfiles
	536	+
267	537	pfiles_DATA = $(parfiles)
	538	+
268	539	testscriptsdir = $(pyexecdir)/cscripts/tests
	540	+
269	541	testscripts_DATA = $(testscripts)
	542	+
270	543	testdatadir = $(pyexecdir)/cscripts/tests/data
	544	+
271	545	testdata_DATA = $(testdata)
	546	+
272	547	testiactdatadir = $(pyexecdir)/cscripts/tests/data/iactdata
	548	+
273	549	testiactdata_DATA = $(testiactdata)
	550	+
274	551	testiacteventsdir = $(pyexecdir)/cscripts/tests/data/iactdata/events
	552	+
275	553	testiactevents_DATA = $(testiactevents)
276	554
	555	+
	556	+
277	557	# Files to be distributed in the tar file
	558	+
278	559	EXTRA_DIST = $(binscripts) $(pythonscripts) $(parfiles) \
	560	+
279	561	$(testscripts) $(testdata) $(testiactdata) \
	562	+
280	563	$(testiactevents)
281	564
	565	+
	566	+
282	567	# Add install hook rule to copy cscripts without .py into the bindir
	568	+
283	569	install-data-hook:
	570	+
284	571	@binlist='$(binscripts)';\
	572	+
285	573	for p in $$binlist; do \
	574	+
286	575	chmod +x "$(DESTDIR)$(bindir)/$$p"; \
	576	+
287	577	done
	578	+
288	579	@linklist='$(linkscripts)';\
	580	+
289	581	for p in $$linklist; do \
	582	+
290	583	rm -rf "$(DESTDIR)$(bindir)/$$p"; \
	584	+
291	585	cp "$(DESTDIR)$(pyexecdir)/cscripts/$$p.py" "$(DESTDIR)$(bindir)/$$p"; \
	586	+
292	587	chmod +x "$(DESTDIR)$(bindir)/$$p"; \
	588	+
293	589	done
294	590
	591	+
	592	+
295	593	# Uninstall hook rule to remove the cscripts from the bindir
	594	+
296	595	uninstall-hook:
	596	+
297	597	@linklist='$(linkscripts)';\
	598	+
298	599	for p in $$linklist; do \
	600	+
299	601	rm -rf "$(DESTDIR)$(bindir)/$$p"; \
	602	+
300	603	done
301	604
	605	+
	606	+
302	607	# Files to be removed in build directory
	608	+
303	609	clean-local:
	610	+
304	611	@if ! [ '@top_srcdir@' -ef '@top_builddir@' ]; then \
	612	+
305	613	rm -rf $(top_builddir)/cscripts/cs*.py; \
	614	+
306	615	rm -rf $(top_builddir)/cscripts/obsutils.py; \
	616	+
307	617	rm -rf $(top_builddir)/cscripts/modutils.py; \
	618	+
308	619	rm -rf $(top_builddir)/cscripts/calutils.py; \
	620	+
309	621	rm -rf $(top_builddir)/cscripts/ioutils.py; \
	622	+
310	623	rm -rf $(top_builddir)/cscripts/mputils.py; \
	624	+
311	625	rm -rf $(top_builddir)/cscripts/*.par; \
	626	+
312	627	fi
	628	+
313	629	rm -rf $(top_builddir)/cscripts/*.pyc
	630	+
314	631	rm -rf $(top_builddir)/cscripts/__pycache__
315	632
	633	+
	634	+
316	635	# Uninstall the cscripts Python module
	636	+
317	637	uninstall-local:
	638	+
318	639	rm -rf $(DESTDIR)$(pyexecdir)/cscripts/*.pyc
	640	+
319	641	rm -rf $(DESTDIR)$(pyexecdir)/cscripts/*.pyc
	642	+
320	643	rm -rf $(DESTDIR)$(pyexecdir)/cscripts/__pycache__
	644	+
321	645	rm -rf $(DESTDIR)$(pyexecdir)/cscripts/tests/*.pyc
	646	+
322	647	rm -rf $(DESTDIR)$(pyexecdir)/cscripts/tests/__pycache__
	648	+
...	...

cscripts/__init__.py.in

View file @d0da27c

1	1	# ==========================================================================
	2	+
2	3	# cscripts Python module
	4	+
3	5	#
	6	+
4	7	# Copyright (C) 2015-2018 Juergen Knoedlseder
	8	+
5	9	#
	10	+
6	11	# This program is free software: you can redistribute it and/or modify
	12	+
7	13	# it under the terms of the GNU General Public License as published by
	14	+
8	15	# the Free Software Foundation, either version 3 of the License, or
	16	+
9	17	# (at your option) any later version.
	18	+
10	19	#
	20	+
11	21	# This program is distributed in the hope that it will be useful,
	22	+
12	23	# but WITHOUT ANY WARRANTY; without even the implied warranty of
	24	+
13	25	# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
	26	+
14	27	# GNU General Public License for more details.
	28	+
15	29	#
	30	+
16	31	# You should have received a copy of the GNU General Public License
	32	+
17	33	# along with this program. If not, see <http://www.gnu.org/licenses/>.
	34	+
18	35	#
	36	+
19	37	# ==========================================================================
	38	+
20	39	# Python version check
	40	+
21	41	import sys
	42	+
22	43	req_version = (2,6)
	44	+
23	45	cur_version = sys.version_info
24	46
	47	+
	48	+
25	49	# List all scripts in this module
	50	+
26	51	__all__ = [
	52	+
27	53	"csbkgmodel",
	54	+
28	55	"cscaldb",
	56	+
29	57	"csebins",
	58	+
30	59	"csinfo",
	60	+
31	61	"cslightcrv",
	62	+
32	63	"csmodelinfo",
	64	+
33	65	"csmodelmerge",
	66	+
34	67	"csmodelselect",
	68	+
35	69	"csmodelsois",
	70	+
36	71	"csobs2caldb",
	72	+
37	73	"csobsdef",
	74	+
38	75	"csobsinfo",
	76	+
39	77	"csobsselect",
	78	+
40	79	"csphagen",
	80	+
41	81	"csphasecrv",
	82	+
42	83	"cspull",
	84	+
43	85	"csresmap",
	86	+
44	87	"csresspec",
	88	+
45	89	"csroot2caldb",
	90	+
46	91	"cssens",
	92	+
47	93	"csspec",
	94	+
48	95	"cssrcdetect",
	96	+
49	97	"cstsdist",
	98	+
50	99	"cstsmapmerge",
	100	+
51	101	"cstsmapsplit",
	102	+
52	103	"csviscube",
	104	+
	105	+ "csscs",
53	106	"csworkflow",
	107	+
54	108	"obsutils",
	109	+
55	110	"modutils",
	111	+
56	112	"calutils",
	113	+
57	114	"ioutils",
	115	+
58	116	"mputils"
	117	+
59	118	]
	119	+
60	120	if cur_version > req_version:
	121	+
61	122	__all__.extend(["csfindobs",
	123	+
62	124	"csiactcopy",
	125	+
63	126	"csiactdata",
	127	+
64	128	"csiactobs"])
65	129
	130	+
	131	+
66	132	# Import
	133	+
67	134	from cscripts.csbkgmodel import csbkgmodel
	135	+
68	136	from cscripts.cscaldb import cscaldb
	137	+
69	138	from cscripts.csebins import csebins
	139	+
70	140	from cscripts.csinfo import csinfo
	141	+
71	142	from cscripts.cslightcrv import cslightcrv
	143	+
72	144	from cscripts.csmodelinfo import csmodelinfo
	145	+
73	146	from cscripts.csmodelmerge import csmodelmerge
	147	+
74	148	from cscripts.csmodelselect import csmodelselect
	149	+
75	150	from cscripts.csmodelsois import csmodelsois
	151	+
76	152	from cscripts.csobs2caldb import csobs2caldb
	153	+
77	154	from cscripts.csobsdef import csobsdef
	155	+
78	156	from cscripts.csobsinfo import csobsinfo
	157	+
79	158	from cscripts.csobsselect import csobsselect
	159	+
80	160	from cscripts.csphagen import csphagen
	161	+
81	162	from cscripts.csphasecrv import csphasecrv
	163	+
82	164	from cscripts.cspull import cspull
	165	+
83	166	from cscripts.csresmap import csresmap
	167	+
84	168	from cscripts.csresspec import csresspec
	169	+
85	170	from cscripts.csroot2caldb import csroot2caldb
	171	+
86	172	from cscripts.cssens import cssens
	173	+
87	174	from cscripts.csspec import csspec
	175	+
88	176	from cscripts.cssrcdetect import cssrcdetect
	177	+
89	178	from cscripts.cstsdist import cstsdist
	179	+
90	180	from cscripts.cstsmapmerge import cstsmapmerge
	181	+
91	182	from cscripts.cstsmapsplit import cstsmapsplit
	183	+
92	184	from cscripts.csviscube import csviscube
	185	+
	186	+from cscripts.csscs import csscs
93	187	from cscripts.csworkflow import csworkflow
	188	+
94	189	from cscripts import obsutils
	190	+
95	191	from cscripts import modutils
	192	+
96	193	from cscripts import calutils
	194	+
97	195	from cscripts import ioutils
	196	+
98	197	if cur_version > req_version:
	198	+
99	199	from cscripts.csfindobs import csfindobs
	200	+
100	201	from cscripts.csiactcopy import csiactcopy
	202	+
101	203	from cscripts.csiactdata import csiactdata
	204	+
102	205	from cscripts.csiactobs import csiactobs
103	206
	207	+
	208	+
104	209	# Delete version check variables
	210	+
105	211	del sys
	212	+
106	213	del req_version
	214	+
107	215	del cur_version
108	216
	217	+
	218	+
109	219	# Add test function
	220	+
110	221	def test():
	222	+
111	223	"""
	224	+
112	225	Run cscripts tests.
	226	+
113	227	"""
	228	+
114	229	from cscripts.tests import test_python_cscripts
	230	+
115	231	test_python_cscripts.test(installed=True)
116	232
	233	+
	234	+
117	235	# Add version
	236	+
118	237	__version__ = '@PACKAGE_VERSION@'
	238	+
...	...

cscripts/csscs.par 0 → 100644

View file @d0da27c

	1	+#############################################################################
	2	+# #
	3	+# CTA Science Analysis Tools #
	4	+# #
	5	+# ------------------------------------------------------------------------- #
	6	+# #
	7	+# File: csscs.par #
	8	+# #
	9	+# Author: Luigi Tibaldo #
	10	+# luigi.tibaldo@irap.omp.eu #
	11	+# IRAP #
	12	+# #
	13	+# Purpose: Parameter file for the csscs script #
	14	+# #
	15	+#############################################################################
	16	+#
	17	+# General parameters
	18	+#===================
	19	+# Your parameters go here
	20	+
	21	+#
	22	+# Standard parameters
	23	+#====================
	24	+chatter, i, h, 2,0,4, "Chattiness of output"
	25	+clobber, b, h, yes,,, "Overwrite existing output files with new output files?"
	26	+debug, b, h, no,,, "Activate debugging mode?"
	27	+mode, s, h, ql,,, "Mode of automatic parameters"
	28	+logfile, f, h, csscs.log,,, "Log filename"
...	...

cscripts/csscs.py 0 → 100755

View file @d0da27c

	1	+#! /usr/bin/env python
	2	+# ==========================================================================
	3	+# Spectral component separation script
	4	+#
	5	+# Copyright (C) 2020 Luigi Tibaldo
	6	+#
	7	+# This program is free software: you can redistribute it and/or modify
	8	+# it under the terms of the GNU General Public License as published by
	9	+# the Free Software Foundation, either version 3 of the License, or
	10	+# (at your option) any later version.
	11	+#
	12	+# This program is distributed in the hope that it will be useful,
	13	+# but WITHOUT ANY WARRANTY; without even the implied warranty of
	14	+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
	15	+# GNU General Public License for more details.
	16	+#
	17	+# You should have received a copy of the GNU General Public License
	18	+# along with this program. If not, see <http://www.gnu.org/licenses/>.
	19	+#
	20	+# ==========================================================================
	21	+import sys
	22	+import gammalib
	23	+import ctools
	24	+
	25	+
	26	+# ================= #
	27	+# csscs class #
	28	+# ================= #
	29	+class csscs(ctools.csobservation):
	30	+ """
	31	+ Spectral component separation script
	32	+ """
	33	+
	34	+ # Constructor
	35	+ def __init__(self, *argv):
	36	+ """
	37	+ Constructor
	38	+
	39	+ Parameters
	40	+ ----------
	41	+ argv : list of str
	42	+ List of IRAF command line parameter strings of the form
	43	+ ``parameter=3``.
	44	+ """
	45	+ # Initialise application by calling the base class constructor
	46	+ self._init_csobservation(self.__class__.__name__, ctools.__version__, argv)
	47	+
	48	+ # Return
	49	+ return
	50	+
	51	+ # State methods for pickling
	52	+ def __getstate__(self):
	53	+ """
	54	+ Extend ctools.csobservation __getstate__ method
	55	+
	56	+ Returns
	57	+ -------
	58	+ state : dict
	59	+ Pickled instance
	60	+ """
	61	+ # Set pickled dictionary
	62	+ state = {'base' : ctools.csobservation.__getstate__(self)}
	63	+
	64	+ # Return pickled dictionary
	65	+ return state
	66	+
	67	+ def __setstate__(self, state):
	68	+ """
	69	+ Extend ctools.csobservation __setstate__ method
	70	+
	71	+ Parameters
	72	+ ----------
	73	+ state : dict
	74	+ Pickled instance
	75	+ """
	76	+ # Set state
	77	+ ctools.csobservation.__setstate__(self, state['base'])
	78	+
	79	+ # Return
	80	+ return
	81	+
	82	+
	83	+ # Private methods
	84	+ def _get_parameters(self):
	85	+ """
	86	+ Get parameters from parfile
	87	+ """
	88	+ # TODO: Add code to query all relevant parameters
	89	+
	90	+ # Write input parameters into logger
	91	+ self._log_parameters(gammalib.TERSE)
	92	+
	93	+ # Return
	94	+ return
	95	+
	96	+
	97	+ # Public methods
	98	+ def run(self):
	99	+ """
	100	+ Run the script
	101	+ """
	102	+ # Switch screen logging on in debug mode
	103	+ if self._logDebug():
	104	+ self._log.cout(True)
	105	+
	106	+ # Get parameters
	107	+ self._get_parameters()
	108	+
	109	+ # TODO: Your code goes here
	110	+
	111	+ # Return
	112	+ return
	113	+
	114	+ def save(self):
	115	+ """
	116	+ Save something
	117	+ """
	118	+ # Write header
	119	+ self._log_header1(gammalib.TERSE, 'Save something')
	120	+
	121	+ # TODO: Your code goes here
	122	+
	123	+ # Return
	124	+ return
	125	+
	126	+
	127	+# ======================== #
	128	+# Main routine entry point #
	129	+# ======================== #
	130	+if __name__ == '__main__':
	131	+
	132	+ # Create instance of application
	133	+ app = csscs(sys.argv)
	134	+
	135	+ # Execute application
	136	+ app.execute()
...	...

doc/source/users/reference_manual/csscs.rst 0 → 100644

View file @d0da27c

	1	+.. _csscs:
	2	+
	3	+csscs
	4	+==============================
	5	+
	6	+ToDo: Describe in a one liner what the script is doing.
	7	+
	8	+
	9	+Synopsis
	10	+--------
	11	+
	12	+ToDo: Desribe in detail what the script is doing, what it takes on input and
	13	+what it produces on output. Please do not write more than 80 characters per
	14	+line since this file is also used to produce a help text for the terminal.
	15	+
	16	+
	17	+General parameters
	18	+------------------
	19	+
	20	+ToDo: Add here your parameters.
	21	+
	22	+
	23	+Standard parameters
	24	+-------------------
	25	+
	26	+``(chatter = 2) [integer]``
	27	+ Verbosity of the executable:
	28	+ ``chatter = 0``: no information will be logged
	29	+
	30	+ ``chatter = 1``: only errors will be logged
	31	+
	32	+ ``chatter = 2``: errors and actions will be logged
	33	+
	34	+ ``chatter = 3``: report about the task execution
	35	+
	36	+ ``chatter = 4``: detailed report about the task execution
	37	+
	38	+``(clobber = yes) [boolean]``
	39	+ Specifies whether an existing output file should be overwritten.
	40	+
	41	+``(debug = no) [boolean]``
	42	+ Enables debug mode. In debug mode the executable will dump any log file output to the console.
	43	+
	44	+``(mode = ql) [string]``
	45	+ Mode of automatic parameters (default is ``ql``, i.e. "query and learn").
	46	+
	47	+``(logfile = csscs.log) [string]``
	48	+ Name of log file.
	49	+
	50	+
	51	+Related tools or scripts
	52	+------------------------
	53	+
	54	+None
...	...

doc/source/users/reference_manual/index.rst

View file @d0da27c

1	1	.. _reference:
2	2
	3	+
	4	+
3	5	Reference Manual
	6	+
4	7	================
5	8
	9	+
	10	+
6	11	This manual provides reference information for all ctools and csripts.
	12	+
7	13	General information on ctools usage can be found `here
	14	+
8	15	<../user_manual/introduction.html>`_. The description of user parameters in the reference
	16	+
9	17	manual is documented `here <usage.html>`__.
10	18
11	19
	20	+
	21	+
	22	+
12	23	Below you find links to the command line reference for all available tools and scripts.
13	24
	25	+
	26	+
14	27	ctools
	28	+
15	29	------
16	30
	31	+
	32	+
17	33	.. toctree::
	34	+
18	35	:maxdepth: 1
19	36
	37	+
	38	+
20	39	ctbin --- Generates counts cube <ctbin>
	40	+
21	41	ctbkgcube --- Generates background cube <ctbkgcube>
	42	+
22	43	ctbutterfly --- Compute butterfly <ctbutterfly>
	44	+
23	45	ctcubemask --- Filter counts cube <ctcubemask>
	46	+
24	47	ctedispcube --- Generates energy dispersion cube <ctedispcube>
	48	+
25	49	cterror --- Calculates likelihood profile errors <cterror>
	50	+
26	51	ctexpcube --- Generates exposure cube <ctexpcube>
	52	+
27	53	ctfindvar --- Search for source variability <ctfindvar>
	54	+
28	55	ctlike --- Performs maximum likelihood fitting <ctlike>
	56	+
29	57	ctmapcube --- Generates a map cube <ctmapcube>
	58	+
30	59	ctmodel --- Computes model counts cube <ctmodel>
	60	+
31	61	ctobssim --- Simulate observations <ctobssim>
	62	+
32	63	ctphase --- Computes the phase of each event <ctphase>
	64	+
33	65	ctprob --- Computes event probability for a given model <ctprob>
	66	+
34	67	ctpsfcube --- Generates point spread function cube <ctpsfcube>
	68	+
35	69	ctselect --- Selects event data <ctselect>
	70	+
36	71	ctskymap --- Generates sky map <ctskymap>
	72	+
37	73	cttsmap --- Generates Test Statistic map <cttsmap>
	74	+
38	75	ctulimit --- Calculates upper limit <ctulimit>
39	76
40	77
	78	+
	79	+
	80	+
41	81	cscripts
	82	+
42	83	--------
43	84
	85	+
	86	+
44	87	.. toctree::
	88	+
45	89	:maxdepth: 1
46	90
	91	+
	92	+
	93	+ csscs --- ToDo: Describe what script is doing <csscs>
47	94	csbkgmodel --- Generates background model for 3D analysis <csbkgmodel>
	95	+
48	96	cscaldb --- Lists available instrument response functions <cscaldb>
	97	+
49	98	csebins --- Generates energy boundaries for stacked analysis <csebins>
	99	+
50	100	cslightcrv --- Computes light curve <cslightcrv>
	101	+
51	102	csmodelinfo --- Shows model container content <csmodelinfo>
	103	+
52	104	csmodelmerge --- Merges several model containers into one file <csmodelmerge>
	105	+
53	106	csmodelselect --- Select models from model definition file <csmodelselect>
	107	+
54	108	csmodelsois --- Generate map cube from subset of models <csmodelsois>
	109	+
55	110	csobsdef --- Generates observation definition file <csobsdef>
	111	+
56	112	csobsinfo --- Shows observation container content <csobsinfo>
	113	+
57	114	csobsselect --- Select observations from observation definition file <csobsselect>
	115	+
58	116	csphagen --- Generates PHA, ARF, RMF files based on source/background regions <csphagen>
	117	+
59	118	csphasecrv --- Computes phase curve <csphasecrv>
	119	+
60	120	cspull --- Generates pull distribution <cspull>
	121	+
61	122	csresmap --- Generates residual map <csresmap>
	123	+
62	124	csresspec --- Generates residual spectrum <csresspec>
	125	+
63	126	csroot2caldb --- Creates a caldb entry from a ROOT file <csroot2caldb>
	127	+
64	128	cssens --- Computes CTA sensitivity <cssens>
	129	+
65	130	csspec --- Computes spectral points <csspec>
	131	+
66	132	cssrcdetect --- Detects sources in sky map <cssrcdetect>
	133	+
67	134	cstsdist --- Generates Test Statistic distribution <cstsdist>
	135	+
68	136	cstsmapmerge --- Merges slices from Test Statistic map computations <cstsmapmerge>
	137	+
69	138	cstsmapsplit --- Creates commands to split the Test Statistic map computations <cstsmapsplit>
	139	+
70	140	csviscube --- Computes visibility cube <csviscube>
71	141
72	142
	143	+
	144	+
	145	+
73	146	Scripts to manage an IACT database
	147	+
74	148	----------------------------------
75	149
	150	+
	151	+
76	152	.. warning::
77	153
	154	+
	155	+
78	156	The ``csiactdata``, ``csiactobs``, ``csfindobs`` and ``csiactcopy`` scripts
	157	+
79	158	rely on the ``json`` Python module which is only available in Python 2.6
	159	+
80	160	or higher. These scripts will not work on older Python versions.
81	161
	162	+
	163	+
82	164	.. toctree::
	165	+
83	166	:maxdepth: 1
84	167
	168	+
	169	+
85	170	csobs2caldb --- Creates a caldb entry from an input observation <csobs2caldb>
	171	+
86	172	csiactdata --- Shows information about IACT data available on the user machine <csiactdata>
	173	+
87	174	csiactobs --- Generates observation definition file for IACT data from observation IDs <csiactobs>
	175	+
88	176	csfindobs --- Generates a list of IACT observation IDs <csfindobs>
	177	+
89	178	csiactcopy --- Copies IACT data from one location to another <csiactcopy>
	179	+
...	...

test/test_csscs.py 0 → 100644

View file @d0da27c

	1	+#! /usr/bin/env python
	2	+# ==========================================================================
	3	+# This scripts performs unit tests for the csscs script.
	4	+#
	5	+# Copyright (C) 2020 Luigi Tibaldo
	6	+#
	7	+# This program is free software: you can redistribute it and/or modify
	8	+# it under the terms of the GNU General Public License as published by
	9	+# the Free Software Foundation, either version 3 of the License, or
	10	+# (at your option) any later version.
	11	+#
	12	+# This program is distributed in the hope that it will be useful,
	13	+# but WITHOUT ANY WARRANTY; without even the implied warranty of
	14	+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
	15	+# GNU General Public License for more details.
	16	+#
	17	+# You should have received a copy of the GNU General Public License
	18	+# along with this program. If not, see <http://www.gnu.org/licenses/>.
	19	+#
	20	+# ==========================================================================
	21	+import os
	22	+import gammalib
	23	+import cscripts
	24	+from testing import test
	25	+
	26	+
	27	+# ========================= #
	28	+# Test class for csscs script #
	29	+# ========================= #
	30	+class Test(test):
	31	+ """
	32	+ Test class for csscs script
	33	+
	34	+ This test class makes unit tests for the csscs script by using it from
	35	+ the command line and from Python.
	36	+ """
	37	+
	38	+ # Constructor
	39	+ def __init__(self):
	40	+ """
	41	+ Constructor
	42	+ """
	43	+ # Call base class constructor
	44	+ test.__init__(self)
	45	+
	46	+ # Return
	47	+ return
	48	+
	49	+ # Set test functions
	50	+ def set(self):
	51	+ """
	52	+ Set all test functions
	53	+ """
	54	+ # Set test name
	55	+ self.name('csscs')
	56	+
	57	+ # Append tests
	58	+ self.append(self._test_cmd, 'Test csscs on command line')
	59	+ self.append(self._test_python, 'Test csscs from Python')
	60	+ self.append(self._test_pickeling, 'Test csscs pickeling')
	61	+
	62	+ # Return
	63	+ return
	64	+
	65	+ # Test csscs on command line
	66	+ def _test_cmd(self):
	67	+ """
	68	+ Test csscs on the command line
	69	+ """
	70	+ # Set script name
	71	+ csscs = self._script('csscs')
	72	+
	73	+ # Setup csscs command
	74	+ cmd = csscs+' logfile="csscs_cmd1.log" chatter=1'
	75	+
	76	+ # Check if execution was successful
	77	+ self.test_value(self._execute(cmd), 0,
	78	+ 'Check successful execution from command line')
	79	+
	80	+ # Check csscs --help
	81	+ self._check_help(csscs)
	82	+
	83	+ # Return
	84	+ return
	85	+
	86	+ # Test csscs from Python
	87	+ def _test_python(self):
	88	+ """
	89	+ Test csscs from Python
	90	+ """
	91	+ # Allocate csscs
	92	+ script = cscripts.csscs()
	93	+
	94	+ # Check that saving does not nothing
	95	+ script['logfile'] = 'csscs_py0.log'
	96	+ script.logFileOpen()
	97	+ script.save()
	98	+ self.test_assert(not os.path.isfile('csscs_py0.fits'),
	99	+ 'Check that no FITS file has been created')
	100	+
	101	+ # Check that clearing does not lead to an exception or segfault
	102	+ script.clear()
	103	+
	104	+ # Now set csscs parameters
	105	+ script['logfile'] = 'csscs_py1.log'
	106	+ script['chatter'] = 2
	107	+
	108	+ # Run csscs script
	109	+ script.logFileOpen()
	110	+ script.run()
	111	+
	112	+ # Check result
	113	+ self._check_result(script)
	114	+
	115	+ # Return
	116	+ return
	117	+
	118	+ # Test csscs pickeling
	119	+ def _test_pickeling(self):
	120	+ """
	121	+ Test csscs pickeling
	122	+ """
	123	+ # Perform pickeling test of empty class
	124	+ self._pickeling(cscripts.csscs())
	125	+
	126	+ # Setup script for pickling text
	127	+ script = cscripts.csscs()
	128	+ script['logfile'] = 'csscs_py1_pickle.log'
	129	+ script['chatter'] = 2
	130	+
	131	+ # Perform pickeling tests of filled class
	132	+ obj = self._pickeling(script)
	133	+
	134	+ # Run csscs script and save result
	135	+ obj.logFileOpen() # Make sure we get a log file
	136	+ obj.run()
	137	+ obj.save()
	138	+
	139	+ # TODO: Check result file
	140	+
	141	+ # Return
	142	+ return
	143	+
	144	+ # Check csscs result
	145	+ def _check_result(self, script):
	146	+ """
	147	+ Check content of script
	148	+
	149	+ Parameters
	150	+ ----------
	151	+ script : `~cscripts.csscs`
	152	+ csscs instance
	153	+ """
	154	+ # TODO: Implement test on script result
	155	+
	156	+ # Return
	157	+ return
...	...

test/test_python_cscripts.py

View file @d0da27c

1	1	#! /usr/bin/env python
	2	+
2	3	# ==========================================================================
	4	+
3	5	# This scripts performs unit tests for cscripts
	6	+
4	7	#
	8	+
5	9	# Copyright (C) 2016-2019 Juergen Knoedlseder
	10	+
6	11	#
	12	+
7	13	# This program is free software: you can redistribute it and/or modify
	14	+
8	15	# it under the terms of the GNU General Public License as published by
	16	+
9	17	# the Free Software Foundation, either version 3 of the License, or
	18	+
10	19	# (at your option) any later version.
	20	+
11	21	#
	22	+
12	23	# This program is distributed in the hope that it will be useful,
	24	+
13	25	# but WITHOUT ANY WARRANTY; without even the implied warranty of
	26	+
14	27	# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
	28	+
15	29	# GNU General Public License for more details.
	30	+
16	31	#
	32	+
17	33	# You should have received a copy of the GNU General Public License
	34	+
18	35	# along with this program. If not, see <http://www.gnu.org/licenses/>.
	36	+
19	37	#
	38	+
20	39	# ==========================================================================
	40	+
21	41	import os
	42	+
22	43	import sys
	44	+
23	45	import gammalib
	46	+
24	47	import cscripts
	48	+
25	49	sys.path.append(os.path.dirname(os.path.abspath(__file__)))
	50	+
26	51	import test_cscript
	52	+
27	53	import test_cscaldb
	54	+
28	55	import test_csbkgmodel
	56	+
29	57	import test_csebins
	58	+
30	59	import test_csfindobs
	60	+
31	61	import test_csinfo
	62	+
32	63	import test_cslightcrv
	64	+
33	65	import test_csmodelinfo
	66	+
34	67	import test_csmodelmerge
	68	+
35	69	import test_csmodelselect
	70	+
36	71	import test_csmodelsois
	72	+
37	73	import test_csobs2caldb
	74	+
38	75	import test_csobsdef
	76	+
39	77	import test_csobsinfo
	78	+
40	79	import test_csobsselect
	80	+
41	81	import test_csphagen
	82	+
42	83	import test_csphasecrv
	84	+
43	85	import test_cspull
	86	+
44	87	import test_csresmap
	88	+
45	89	import test_csresspec
	90	+
46	91	import test_csroot2caldb
	92	+
47	93	import test_cssens
	94	+
48	95	import test_csspec
	96	+
49	97	import test_cssrcdetect
	98	+
50	99	import test_cstsdist
	100	+
51	101	import test_cstsmapmerge
	102	+
52	103	import test_cstsmapsplit
	104	+
53	105	import test_csviscube
	106	+
	107	+import test_csscs
54	108	import test_csworkflow
	109	+
55	110	import test_obsutils
	111	+
56	112	import test_mputils
	113	+
57	114	import test_csiactcopy
	115	+
58	116	import test_csiactdata
	117	+
59	118	import test_csiactobs
60	119
61	120
	121	+
	122	+
	123	+
62	124	# ================== #
	125	+
63	126	# Perform unit tests #
	127	+
64	128	# ================== #
	129	+
65	130	def test(installed=False, debug=False):
	131	+
66	132	"""
	133	+
67	134	Perform cscripts unit testing.
68	135
	136	+
	137	+
69	138	Parameters
	139	+
70	140	----------
	141	+
71	142	installed : bool, optional
	143	+
72	144	Flag indicating whether the script has been installed or not
	145	+
73	146	debug : bool, optional
	147	+
74	148	Enables debugging
	149	+
75	150	"""
	151	+
76	152	# If we have an installed version then create a temporary directory and
	153	+
77	154	# copy over all information that is needed
	155	+
78	156	if installed:
79	157
	158	+
	159	+
80	160	# Create temporary working directory
	161	+
81	162	import tempfile
	163	+
82	164	path = tempfile.mkdtemp()
	165	+
83	166	os.chdir(path)
84	167
	168	+
	169	+
85	170	# Get test directory
	171	+
86	172	import inspect
	173	+
87	174	testdir = inspect.getfile(cscripts.tests)
	175	+
88	176	dirname = os.path.dirname(testdir)
89	177
	178	+
	179	+
90	180	# Copy test data in "data" directory
	181	+
91	182	os.system('cp -r %s %s' % (dirname+'/data', 'data'))
92	183
	184	+
	185	+
93	186	# Set test data environment variable
	187	+
94	188	os.environ['TEST_DATA'] = 'data'
95	189
	190	+
	191	+
96	192	# ... otherwise set the calibration database to the one shipped with the
	193	+
97	194	# package; we don't need to set the 'TEST_DATA', this is done by the
	195	+
98	196	# test environment
	197	+
99	198	else:
	199	+
100	200	os.environ['CALDB'] = '%s/caldb' % (os.environ['TEST_SRCDIR'])
101	201
	202	+
	203	+
102	204	# Create a local "pfiles" directory and set PFILES environment variable
	205	+
103	206	try:
	207	+
104	208	os.mkdir('pfiles')
	209	+
105	210	except:
	211	+
106	212	pass
	213	+
107	214	os.environ['PFILES'] = 'pfiles'
108	215
	216	+
	217	+
109	218	# Copy the cscripts parameter files into the "pfiles" directory. For a
	219	+
110	220	# non-installed test we copy the parameter files from the "cscripts"
	221	+
111	222	# source directory into the "pfiles" directory, for an installed version
	223	+
112	224	# we get all parameter files from the "syspfiles" directory. Also make
	225	+
113	226	# sure that all parameter files are writable.
	227	+
114	228	if not installed:
	229	+
115	230	os.system('cp -r %s/cscripts/*.par pfiles/'% (os.environ['TEST_SRCDIR']))
	231	+
116	232	os.system('chmod u+w pfiles/*')
	233	+
117	234	else:
	235	+
118	236	os.system('cp -r %s/syspfiles/*.par pfiles/' % (os.environ['CTOOLS']))
	237	+
119	238	os.system('chmod u+w pfiles/*')
120	239
	240	+
	241	+
121	242	# Define list of test suites
	243	+
122	244	tests = [test_cscript.Test(),
	245	+
123	246	test_csbkgmodel.Test(),
	247	+
124	248	test_cscaldb.Test(),
	249	+
125	250	test_csebins.Test(),
	251	+
126	252	test_csinfo.Test(),
	253	+
127	254	test_cslightcrv.Test(),
	255	+
128	256	test_csmodelinfo.Test(),
	257	+
129	258	test_csmodelmerge.Test(),
	259	+
130	260	test_csmodelselect.Test(),
	261	+
131	262	test_csmodelsois.Test(),
	263	+
132	264	test_csobs2caldb.Test(),
	265	+
133	266	test_csobsdef.Test(),
	267	+
134	268	test_csobsinfo.Test(),
	269	+
135	270	test_csobsselect.Test(),
	271	+
136	272	test_csphagen.Test(),
	273	+
137	274	test_csphasecrv.Test(),
	275	+
138	276	test_cspull.Test(),
	277	+
139	278	test_csresmap.Test(),
	279	+
140	280	test_csresspec.Test(),
	281	+
141	282	test_csroot2caldb.Test(),
	283	+
142	284	test_cssens.Test(),
	285	+
143	286	test_csspec.Test(),
	287	+
144	288	test_cssrcdetect.Test(),
	289	+
145	290	test_cstsdist.Test(),
	291	+
146	292	test_cstsmapmerge.Test(),
	293	+
147	294	test_cstsmapsplit.Test(),
	295	+
148	296	test_csviscube.Test(),
	297	+
	298	+ test_csscs.Test(),
149	299	test_csworkflow.Test(),
	300	+
150	301	test_obsutils.Test(),
	302	+
151	303	test_mputils.Test()]
152	304
	305	+
	306	+
153	307	# Append tests for Python 2.6+ (the IACT cscripts depend on the json
	308	+
154	309	# module which is only available since Python 2.6+)
	310	+
155	311	ver = sys.version.split()[0]
	312	+
156	313	if ver >= '2.6.0':
157	314
	315	+
	316	+
158	317	# Check for VHEFITS environment variable
	318	+
159	319	if 'VHEFITS' in os.environ:
160	320
	321	+
	322	+
161	323	# If the environment variable exists then unset it for the test
	324	+
162	325	# cases. Since Python is executed in a subprocess this will not
	326	+
163	327	# impact the environment variable in the parent shell.
	328	+
164	329	del os.environ['VHEFITS']
165	330
	331	+
	332	+
166	333	# Append IACT script tests to list of test suites
	334	+
167	335	tests.extend([test_csfindobs.Test(),
	336	+
168	337	test_csiactcopy.Test(),
	338	+
169	339	test_csiactdata.Test(),
	340	+
170	341	test_csiactobs.Test()])
171	342
	343	+
	344	+
172	345	# Allocate test suite container
	346	+
173	347	suites = gammalib.GTestSuites('cscripts unit testing')
174	348
	349	+
	350	+
175	351	# Set test suites and append them to suite container
	352	+
176	353	for suite in tests:
	354	+
177	355	suite.set()
	356	+
178	357	suites.append(suite)
179	358
	359	+
	360	+
180	361	# Run test suite
	362	+
181	363	success = suites.run()
182	364
	365	+
	366	+
183	367	# Save test results
	368	+
184	369	if not installed:
	370	+
185	371	suites.save('reports/cscripts.xml')
	372	+
186	373	else:
	374	+
187	375	suites.save('cscripts_reports.xml')
188	376
	377	+
	378	+
189	379	# If debuging is requested then print test suites
	380	+
190	381	if debug:
	382	+
191	383	print(suites)
192	384
	385	+
	386	+
193	387	# Remove temporary direction
	388	+
194	389	if installed:
	390	+
195	391	os.system('rm -rf %s' % (path))
196	392
	393	+
	394	+
197	395	# Raise an exception in case of failure
	396	+
198	397	if not success:
	398	+
199	399	raise RuntimeError('At least one error occured during the test.')
200	400
	401	+
	402	+
201	403	# Return
	404	+
202	405	return
203	406
204	407
	408	+
	409	+
	410	+
205	411	# ======================== #
	412	+
206	413	# Main routine entry point #
	414	+
207	415	# ======================== #
	416	+
208	417	if __name__ == '__main__':
209	418
	419	+
	420	+
210	421	# Run tests
	422	+
211	423	test()
	424	+
...	...