GModelSpectralBins.cpp
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/***************************************************************************
* GModelSpectralBins.cpp - Spectral bins model class *
* ----------------------------------------------------------------------- *
* copyright (C) 2021 by Juergen Knoedlseder *
* ----------------------------------------------------------------------- *
* *
* This program is free software: you can redistribute it and/or modify *
* it under the terms of the GNU General Public License as published by *
* the Free Software Foundation, either version 3 of the License, or *
* (at your option) any later version. *
* *
* This program is distributed in the hope that it will be useful, *
* but WITHOUT ANY WARRANTY; without even the implied warranty of *
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the *
* GNU General Public License for more details. *
* *
* You should have received a copy of the GNU General Public License *
* along with this program. If not, see <http://www.gnu.org/licenses/>. *
* *
***************************************************************************/
/**
* @file GModelSpectralBins.cpp
* @brief Spectral bins model class implementation
* @author Juergen Knoedlseder
*/
/* __ Includes ___________________________________________________________ */
#ifdef HAVE_CONFIG_H
#include <config.h>
#endif
#include <cmath>
#include "GException.hpp"
#include "GTools.hpp"
#include "GRan.hpp"
#include "GEbounds.hpp"
#include "GModelSpectralBins.hpp"
#include "GModelSpectralRegistry.hpp"
/* __ Constants __________________________________________________________ */
/* __ Globals ____________________________________________________________ */
const GModelSpectralBins g_spectral_bins_seed;
const GModelSpectralRegistry g_spectral_bins_registry(&g_spectral_bins_seed);
/* __ Method name definitions ____________________________________________ */
#define G_FLUX "GModelSpectralBins::flux(GEnergy&, GEnergy&)"
#define G_EFLUX "GModelSpectralBins::eflux(GEnergy&, GEnergy&)"
#define G_MC "GModelSpectralBins::mc(GEnergy&, GEnergy&, GTime&, GRan&)"
#define G_READ "GModelSpectralBins::read(GXmlElement&)"
#define G_WRITE "GModelSpectralBins::write(GXmlElement&)"
#define G_APPEND "GModelSpectralBins::append(GEnergy&, GEnergy&, double&)"
#define G_INSERT "GModelSpectralBins::insert(int&, GEnergy&, GEnergy&, "\
"double&)"
#define G_REMOVE "GModelSpectralBins::remove(int&)"
#define G_EMIN_GET "GModelSpectralBins::emin(int&)"
#define G_EMAX_GET "GModelSpectralBins::emax(int&)"
#define G_EMIN_SET "GModelSpectralBins::emin(int&, GEnergy&)"
#define G_EMAX_SET "GModelSpectralBins::emax(int&, GEnergy&)"
#define G_INTENSITY_GET "GModelSpectralBins::intensity(int&)"
#define G_INTENSITY_SET "GModelSpectralBins::intensity(int&, double&)"
/* __ Macros _____________________________________________________________ */
/* __ Coding definitions _________________________________________________ */
/* __ Debug definitions __________________________________________________ */
/*==========================================================================
= =
= Constructors/destructors =
= =
==========================================================================*/
/***********************************************************************//**
* @brief Void constructor
*
* Constructs an empty spectral bin model.
***************************************************************************/
GModelSpectralBins::GModelSpectralBins(void) : GModelSpectral()
{
// Initialise members
init_members();
// Return
return;
}
/***********************************************************************//**
* @brief Spectral model constructor
*
* @param[in] model Spectral model.
* @param[in] ebounds Energy boundaries.
* @param[in] index Spectral index.
*
* Constructs a spectral bins model from any spectral model using the
* energy boundaries that are specified by @p ebounds. Within each spectral
* bin the intensity follows a power law with spectral index @p index.
***************************************************************************/
GModelSpectralBins::GModelSpectralBins(const GModelSpectral& model,
const GEbounds& ebounds,
const double& index) :
GModelSpectral()
{
// Initialise members
init_members();
// Append bins for all energies
for (int i = 0; i < ebounds.size(); ++i) {
append(ebounds.emin(i), ebounds.emax(i), model.eval(ebounds.elogmean(i)));
}
// Store index
this->index(index);
// Return
return;
}
/***********************************************************************//**
* @brief XML constructor
*
* @param[in] xml XML element.
*
* Construct spectral bins model by extracting information from an XML
* element. See the read() method for more information about the expected
* structure of the XML element.
***************************************************************************/
GModelSpectralBins::GModelSpectralBins(const GXmlElement& xml) :
GModelSpectral()
{
// Initialise members
init_members();
// Read information from XML element
read(xml);
// Return
return;
}
/***********************************************************************//**
* @brief Copy constructor
*
* @param[in] model Spectral bins model.
***************************************************************************/
GModelSpectralBins::GModelSpectralBins(const GModelSpectralBins& model) :
GModelSpectral(model)
{
// Initialise members
init_members();
// Copy members
copy_members(model);
// Return
return;
}
/***********************************************************************//**
* @brief Destructor
***************************************************************************/
GModelSpectralBins::~GModelSpectralBins(void)
{
// Free members
free_members();
// Return
return;
}
/*==========================================================================
= =
= Operators =
= =
==========================================================================*/
/***********************************************************************//**
* @brief Assignment operator
*
* @param[in] model Spectral bins model.
* @return Spectral bins model.
***************************************************************************/
GModelSpectralBins& GModelSpectralBins::operator=(const GModelSpectralBins& model)
{
// Execute only if object is not identical
if (this != &model) {
// Copy base class members
this->GModelSpectral::operator=(model);
// Free members
free_members();
// Initialise members
init_members();
// Copy members
copy_members(model);
} // endif: object was not identical
// Return
return *this;
}
/*==========================================================================
= =
= Public methods =
= =
==========================================================================*/
/***********************************************************************//**
* @brief Clear spectral bins model
***************************************************************************/
void GModelSpectralBins::clear(void)
{
// Free class members (base and derived classes, derived class first)
free_members();
this->GModelSpectral::free_members();
// Initialise members
this->GModelSpectral::init_members();
init_members();
// Return
return;
}
/***********************************************************************//**
* @brief Clone spectral bins model
***************************************************************************/
GModelSpectralBins* GModelSpectralBins::clone(void) const
{
// Clone spectral bins model
return new GModelSpectralBins(*this);
}
/***********************************************************************//**
* @brief Evaluate function
*
* @param[in] srcEng True photon energy.
* @param[in] srcTime True photon arrival time.
* @param[in] gradients Compute gradients?
* @return Model value (ph/cm2/s/MeV).
*
* @todo Document method.
***************************************************************************/
double GModelSpectralBins::eval(const GEnergy& srcEng,
const GTime& srcTime,
const bool& gradients) const
{
// Initialise value
double value = 0.0;
// Optionally initialise partial derivatives
if (gradients) {
m_index.factor_gradient(0.0);
for (int i = 0; i < m_values.size(); ++i) {
m_values[i].factor_gradient(0.0);
}
}
// Get bin index
int ibin = bin_index(srcEng);
// Continue only if index is valid
if (ibin >= 0) {
// Get power-law index
double index = m_index.value();
// Compute and store value
double eng = srcEng.MeV();
double e_norm = eng / m_epivot[ibin];
double power = (index != 0.0) ? std::pow(e_norm, index) : 1.0;
// Compute function value
value = m_values[ibin].value() * power;
// Compute gradients
if (gradients) {
// Compute partial derivatives of the parameter values
double g_norm = (m_values[ibin].is_free())
? m_values[ibin].scale() * power : 0.0;
double g_index = (m_index.is_free())
? value * m_index.scale() * std::log(e_norm) : 0.0;
// Set gradients
m_values[ibin].factor_gradient(g_norm);
m_index.factor_gradient(g_index);
} // endif: gradient computation was requested
// Compile option: Check for NaN/Inf
#if defined(G_NAN_CHECK)
if (gammalib::is_notanumber(value) || gammalib::is_infinite(value)) {
std::cout << "*** ERROR: GModelSpectralBins::eval";
std::cout << "(srcEng=" << srcEng;
std::cout << ", srcTime=" << srcTime << "):";
std::cout << " NaN/Inf encountered";
std::cout << " (value=" << value;
std::cout << ", power=" << power;
std::cout << ")" << std::endl;
}
#endif
} // endif: bin index was valid
// Return
return value;
}
/***********************************************************************//**
* @brief Returns model photon flux between [emin, emax] (units: ph/cm2/s)
*
* @param[in] emin Minimum photon energy.
* @param[in] emax Maximum photon energy.
* @return Photon flux (ph/cm2/s).
*
* Computes
*
* \f[
* \int_{\tt emin}^{\tt emax} S_{\rm E}(E | t) dE
* \f]
*
* where
* - [@p emin, @p emax] is an energy interval, and
* - \f$S_{\rm E}(E | t)\f$ is the spectral model (ph/cm2/s/MeV).
***************************************************************************/
double GModelSpectralBins::flux(const GEnergy& emin,
const GEnergy& emax) const
{
// Initialise flux
double flux = 0.0;
// Compute only if integration range is valid
if (emin < emax) {
// Get energy range in MeV
double e_min = emin.MeV();
double e_max = emax.MeV();
// Loop over all bins
for (int ibin = 0; ibin < bins(); ++ibin) {
// Get energy boundaires of bin in MeV
double e_bin_min = m_emin[ibin].value();
double e_bin_max = m_emax[ibin].value();
// Skip bins that do not overlap with energy range
if (e_min >= e_bin_max || e_max < e_bin_min) {
continue;
}
// Raise lower boundary to minimum energy
if (e_bin_min < e_min) {
e_bin_min = e_min;
}
// Lower upper boundary to maximum energy
if (e_bin_max > e_max) {
e_bin_max = e_max;
}
// If energy interval is positive then compute flux
if (e_bin_max > e_bin_min) {
// Add photon flux
flux += m_values[ibin].value() *
gammalib::plaw_photon_flux(e_bin_min,
e_bin_max,
m_epivot[ibin],
m_index.value());
} // endif: energy interval was positive
} // endfor: looped over all spectral bins
} // endif: integration range was valid
// Return
return flux;
}
/***********************************************************************//**
* @brief Returns model energy flux between [emin, emax] (units: erg/cm2/s)
*
* @param[in] emin Minimum photon energy.
* @param[in] emax Maximum photon energy.
* @return Energy flux (erg/cm2/s).
*
* Computes
*
* \f[
* \int_{\tt emin}^{\tt emax} S_{\rm E}(E | t) E \, dE
* \f]
*
* where
* - [@p emin, @p emax] is an energy interval, and
* - \f$S_{\rm E}(E | t)\f$ is the spectral model (ph/cm2/s/MeV).
***************************************************************************/
double GModelSpectralBins::eflux(const GEnergy& emin,
const GEnergy& emax) const
{
// Initialise flux
double eflux = 0.0;
// Compute only if integration range is valid
if (emin < emax) {
// Get energy range in MeV
double e_min = emin.MeV();
double e_max = emax.MeV();
// Loop over all bins
for (int ibin = 0; ibin < bins(); ++ibin) {
// Get energy boundaires of bin in MeV
double e_bin_min = m_emin[ibin].value();
double e_bin_max = m_emax[ibin].value();
// Skip bins that do not overlap with energy range
if (e_min >= e_bin_max || e_max < e_bin_min) {
continue;
}
// Raise lower boundary to minimum energy
if (e_bin_min < e_min) {
e_bin_min = e_min;
}
// Lower upper boundary to maximum energy
if (e_bin_max > e_max) {
e_bin_max = e_max;
}
// If energy interval is positive then compute flux
if (e_bin_max > e_bin_min) {
// Add energy flux
eflux += m_values[ibin].value() *
gammalib::plaw_energy_flux(e_bin_min,
e_bin_max,
m_epivot[ibin],
m_index.value());
} // endif: energy interval was positive
} // endfor: looped over all spectral bins
} // endif: integration range was valid
// Return flux
return eflux;
}
/***********************************************************************//**
* @brief Returns MC energy between [emin, emax]
*
* @param[in] emin Minimum photon energy.
* @param[in] emax Maximum photon energy.
* @param[in] time True photon arrival time.
* @param[in,out] ran Random number generator.
* @return Energy.
*
* @exception GException::erange_invalid
* Energy range is invalid (emin < emax required).
* @exception GException::invalid_return_value
* No valid Monte Carlo cache
*
* Returns Monte Carlo energy by randomly drawing from bin function.
***************************************************************************/
GEnergy GModelSpectralBins::mc(const GEnergy& emin,
const GEnergy& emax,
const GTime& time,
GRan& ran) const
{
// Throw an exception if energy range is invalid
if (emin >= emax) {
throw GException::erange_invalid(G_MC, emin.MeV(), emax.MeV(),
"Minimum energy < maximum energy required.");
}
// Allocate energy
GEnergy energy;
// Update cache
mc_update(emin, emax);
// Determine in which bin we reside. If this fails then thrown an
// exception
int inx = 0;
if (m_mc_cum.size() > 1) {
double u = ran.uniform();
for (inx = m_mc_cum.size()-1; inx > 0; --inx) {
if (m_mc_cum[inx-1] <= u) {
break;
}
}
}
else if (m_mc_cum.size() == 0) {
std::string msg = "No valid bins found for energy interval ["+
emin.print()+","+emax.print()+"]. Either restrict "
"the energy range to the one covered by the "
"spectral bins or extend the spectral bins "
"in energy.";
throw GException::invalid_return_value(G_MC, msg);
}
// Get random energy for specific bin
if (m_mc_exp[inx] != 0.0) {
double e_min = m_mc_min[inx];
double e_max = m_mc_max[inx];
double u = ran.uniform();
double eng = (u > 0.0)
? std::exp(std::log(u * (e_max - e_min) + e_min) / m_mc_exp[inx])
: 0.0;
energy.MeV(eng);
}
else {
double e_min = m_mc_min[inx];
double e_max = m_mc_max[inx];
double u = ran.uniform();
double eng = std::exp(u * (e_max - e_min) + e_min);
energy.MeV(eng);
}
// Return energy
return energy;
}
/***********************************************************************//**
* @brief Read model from XML element
*
* @param[in] xml XML element.
*
* @exception GException::invalid_value
* Lower energy limit larger than upper energy limit.
*
* Reads the spectral information from an XML element. The format of the XML
* elements is
*
* <spectrum type="BinFunction">
* <parameter name="Index" ../>
* <bin>
* <parameter name="LowerLimit" ../>
* <parameter name="UpperLimit" ../>
* <parameter name="Intensity" ../>
* </bin>
* ...
* <bin>
* <parameter name="LowerLimit" ../>
* <parameter name="UpperLimit" ../>
* <parameter name="Intensity" ../>
* </bin>
* </spectrum>
*
* @todo Check that bins are ordered
* @todo Check that energy boundaries are not overlapping
***************************************************************************/
void GModelSpectralBins::read(const GXmlElement& xml)
{
// Free space for bins
m_emin.clear();
m_emax.clear();
m_values.clear();
// Get index parameter pointer
const GXmlElement* index = gammalib::xml_get_par(G_READ, xml, m_index.name());
// Read index parameter
m_index.read(*index);
// Get number of bins from XML file
int bins = xml.elements("bin");
// Loop over all bins
for (int i = 0; i < bins; ++i) {
// Allocate bin parameters
GModelPar emin;
GModelPar emax;
GModelPar intensity;
// Get bins
const GXmlElement* bin = xml.element("bin", i);
// Get parameters
const GXmlElement* lpar = gammalib::xml_get_par(G_READ, *bin, "LowerLimit");
const GXmlElement* upar = gammalib::xml_get_par(G_READ, *bin, "UpperLimit");
const GXmlElement* ipar = gammalib::xml_get_par(G_READ, *bin, "Intensity");
// Read parameters
emin.read(*lpar);
emax.read(*upar);
intensity.read(*ipar);
// Throw an exception if either LowerLimit is larger than UpperLimit
if (emin.value() > emax.value()) {
std::string msg = "Lower energy limit "+gammalib::str(emin.value())+
" MeV is larger than upper energy limit "+
gammalib::str(emax.value())+" MeV. Please "
"specify lower energy limits that are smaller "
"than the upper energy limits.";
throw GException::invalid_value(G_READ, msg);
}
// Push bin parameters on list
m_emin.push_back(emin);
m_emax.push_back(emax);
m_values.push_back(intensity);
} // endfor: looped over bins
// Update parameter mapping
update_pars();
// Set pre-computation cache
set_cache();
// Return
return;
}
/***********************************************************************//**
* @brief Write model into XML element
*
* @param[in] xml XML element into which model information is written.
*
* @exception GException::invalid_value
* Existing XML element is not of required type
* Invalid number of model parameters or bins found in XML element.
*
* Writes the spectral information into an XML element. The format of the XML
* element is
*
* <spectrum type="BinFunction">
* <parameter name="Index" ../>
* <bin>
* <parameter name="LowerLimit" ../>
* <parameter name="UpperLimit" ../>
* <parameter name="Intensity" ../>
* </bin>
* ...
* <bin>
* <parameter name="LowerLimit" ../>
* <parameter name="UpperLimit" ../>
* <parameter name="Intensity" ../>
* </bin>
* </spectrum>
***************************************************************************/
void GModelSpectralBins::write(GXmlElement& xml) const
{
// Set model type
if (xml.attribute("type") == "") {
xml.attribute("type", type());
}
// Verify model type
if (xml.attribute("type") != type()) {
std::string msg = "Spectral model type \""+xml.attribute("type")+"\" "
"is not of type \""+type()+"\".";
throw GException::invalid_value(G_WRITE, msg);
}
// Get index parameter
GXmlElement* index = gammalib::xml_need_par(G_WRITE, xml, m_index.name());
// Write index parameter
m_index.write(*index);
// Determine number of bins
int bins = this->bins();
// If XML element has 0 bins then append bins
if (xml.elements("bin") == 0) {
for (int i = 0; i < bins; ++i) {
xml.append(GXmlElement("bin"));
}
}
// Verify that XML element has the required number of bins and elements.
// Recall that the power-law index also counts as one element.
if (xml.elements() != bins+1) {
std::string msg = "Spectral bins model contains "+
gammalib::str(xml.elements())+
" elements but "+gammalib::str(bins+1)+" elements "
"were expected.";
throw GException::invalid_value(G_WRITE, msg);
}
if (xml.elements("bin") != bins) {
std::string msg = "Spectral bins model contains "+
gammalib::str(xml.elements("bin"))+
" \"bin\" elements but "+gammalib::str(bins)+
" \"bin\" elements were expected.";
throw GException::invalid_value(G_WRITE, msg);
}
// Loop over all bins
for (int i = 0; i < bins; ++i) {
// Get bins
GXmlElement* bin = xml.element("bin", i);
// Get copy of parameters so that we can change their names
GModelPar emin = m_emin[i];
GModelPar emax = m_emax[i];
GModelPar intensity = m_values[i];
// Set names since we appended for internal usage the indices to the
// parameter names, and we want to get rid of them for writing the
// model into the XML element
emin.name("LowerLimit");
emax.name("UpperLimit");
intensity.name("Intensity");
// Get XML parameters
GXmlElement* lpar = gammalib::xml_need_par(G_WRITE, *bin, emin.name());
GXmlElement* upar = gammalib::xml_need_par(G_WRITE, *bin, emax.name());
GXmlElement* ipar = gammalib::xml_need_par(G_WRITE, *bin, intensity.name());
// Write parameters
emin.write(*lpar);
emax.write(*upar);
intensity.write(*ipar);
} // endfor: looped over bins
// Return
return;
}
/***********************************************************************//**
* @brief Append bin
*
* @param[in] emin Lower energy limit.
* @param[in] emax Upper energy limit.
* @param[in] intensity Bin intensity.
*
* @exception GException::invalid_argument
* Lower energy limit is larger than upper energy limit.
*
* Appends one bin to the bin function. By default the lower and upper energy
* limit of the bin is fixed while the intensity of the bin is free.
***************************************************************************/
void GModelSpectralBins::append(const GEnergy& emin,
const GEnergy& emax,
const double& intensity)
{
// Throw an exception if lower limit is larger than upper limit
if (emin > emax) {
std::string msg = "Lower energy limit "+emin.print()+" is larger than "
"upper energy limit "+emax.print()+". Please "
"specify a lower energy limit that is smaller "
"than the upper energy limit.";
throw GException::invalid_value(G_APPEND, msg);
}
// Allocate bin parameters
GModelPar par_emin;
GModelPar par_emax;
GModelPar par_intensity;
// Set emin attributes
par_emin.name("LowerLimit");
par_emin.value(emin.MeV());
par_emin.unit("MeV");
par_emin.has_grad(false);
par_emin.fix();
// Set emax attributes
par_emax.name("UpperLimit");
par_emax.value(emax.MeV());
par_emax.unit("MeV");
par_emax.has_grad(false);
par_emax.fix();
// Set intensity attributes
par_intensity.name("Intensity");
par_intensity.value(intensity);
par_intensity.unit("ph/cm2/s/MeV");
par_intensity.has_grad(true);
par_intensity.free();
// Append to bins
m_emin.push_back(par_emin);
m_emax.push_back(par_emax);
m_values.push_back(par_intensity);
// Update parameter mapping
update_pars();
// Set pre-computation cache
set_cache();
// Return
return;
}
/***********************************************************************//**
* @brief Insert bin
*
* @param[in] index Bin index [0,...,bins()-1].
* @param[in] emin Lower energy limit.
* @param[in] emax Upper energy limit.
* @param[in] intensity Bin intensity.
*
* @exception GException::out_of_range
* Bin index is out of range.
* @exception GException::invalid_argument
* Lower energy limit is larger than upper energy limit.
*
* Inserts a bin into the bin function before the bin with the specified
* @p index. By default the lower and upper energy limit of the bin is fixed
* while the intensity of the bin is free.
***************************************************************************/
void GModelSpectralBins::insert(const int& index,
const GEnergy& emin,
const GEnergy& emax,
const double& intensity)
{
// Raise exception if index is outside boundary
#if defined(G_RANGE_CHECK)
if (index < 0 || index >= bins()) {
throw GException::out_of_range(G_INSERT, "Bin index", index, bins());
}
#endif
// Throw an exception if lower limit is larger than upper limit
if (emin > emax) {
std::string msg = "Lower energy limit "+emin.print()+" is larger than "
"upper energy limit "+emax.print()+". Please "
"specify a lower energy limit that is smaller "
"than the upper energy limit.";
throw GException::invalid_value(G_INSERT, msg);
}
// Allocate bin parameters
GModelPar par_emin;
GModelPar par_emax;
GModelPar par_intensity;
// Set emin attributes
par_emin.name("LowerLimit");
par_emin.value(emin.MeV());
par_emin.unit("MeV");
par_emin.has_grad(false);
par_emin.fix();
// Set emax attributes
par_emax.name("UpperLimit");
par_emax.value(emax.MeV());
par_emax.unit("MeV");
par_emax.has_grad(false);
par_emax.fix();
// Set intensity attributes
par_intensity.name("Intensity");
par_intensity.value(intensity);
par_intensity.unit("ph/cm2/s/MeV");
par_intensity.has_grad(true);
par_intensity.free();
// Insert bin
m_emin.insert(m_emin.begin()+index, par_emin);
m_emax.insert(m_emax.begin()+index, par_emax);
m_values.insert(m_values.begin()+index, par_intensity);
// Update parameter mapping
update_pars();
// Set pre-computation cache
set_cache();
// Return
return;
}
/***********************************************************************//**
* @brief Remove bin
*
* @param[in] index Bin index [0,...,bins()-1].
*
* @exception GException::out_of_range
* Bin index is out of range.
*
* Removes bin of specified @p index from the bin function.
***************************************************************************/
void GModelSpectralBins::remove(const int& index)
{
// Raise exception if index is outside boundary
#if defined(G_RANGE_CHECK)
if (index < 0 || index >= bins()) {
throw GException::out_of_range(G_REMOVE, "Bin index", index, bins());
}
#endif
// Erase energy and intensity
m_emin.erase(m_emin.begin() + index);
m_emax.erase(m_emax.begin() + index);
m_values.erase(m_values.begin() + index);
// Update parameter mapping
update_pars();
// Set pre-computation cache
set_cache();
// Return
return;
}
/***********************************************************************//**
* @brief Reserve space for bins
*
* @param[in] num Number of reserved bins.
*
* Reserves space for @p num bins.
***************************************************************************/
void GModelSpectralBins::reserve(const int& num)
{
// Reserve space
m_emin.reserve(num);
m_emax.reserve(num);
m_values.reserve(num);
// Return
return;
}
/***********************************************************************//**
* @brief Append bins from bin function
*
* @param[in] bins Bin function.
*
* Appends all bins from a bin function to current object.
***************************************************************************/
void GModelSpectralBins::extend(const GModelSpectralBins& bins)
{
// Get number of bins in bin function. Note that we extract the size
// first to avoid an endless loop that arises when a container is
// appended to itself.
int num = bins.bins();
// Continue only if bin function is not empty
if (num > 0) {
// Reserve enough space
reserve(this->bins() + num);
// Loop over all bins and append them to the bin function
for (int i = 0; i < num; ++i) {
m_emin.push_back(bins.m_emin[i]);
m_emax.push_back(bins.m_emax[i]);
m_values.push_back(bins.m_values[i]);
}
// Update parameter mapping
update_pars();
// Set pre-computation cache
set_cache();
} // endif: bin function was not empty
// Return
return;
}
/***********************************************************************//**
* @brief Return spectral power law index
*
* @return Spectrel power law index.
*
* Returns the spectral power law index.
***************************************************************************/
double GModelSpectralBins::index(void) const
{
// Return spectral power law index
return (m_index.value());
}
/***********************************************************************//**
* @brief Set spectral power law index
*
* @param[in] index Spectrel power law index.
*
* Set spectral power law index.
***************************************************************************/
void GModelSpectralBins::index(const double& index)
{
// Set m_index
m_index.value(index);
// Return
return;
}
/***********************************************************************//**
* @brief Return lower energy limit of bin
*
* @param[in] index Bin index [0,...,bins()-1].
* @return Lower energy limit of bin @p index.
*
* @exception GException::out_of_range
* Index is out of range.
*
* Returns the lower energy limit of bin @p index.
***************************************************************************/
GEnergy GModelSpectralBins::emin(const int& index) const
{
// Raise an exception if index is out of range
#if defined(G_RANGE_CHECK)
if (index < 0 || index >= bins()) {
throw GException::out_of_range(G_EMIN_GET, "Bin index", index, bins());
}
#endif
// Retrieve energy
GEnergy energy;
energy.MeV(m_emin[index].value());
// Return energy
return energy;
}
/***********************************************************************//**
* @brief Return upper energy limit of bin
*
* @param[in] index Bin index [0,...,bins()-1].
* @return Upper energy limit of bin @p index.
*
* @exception GException::out_of_range
* Index is out of range.
*
* Returns the upper energy limit of bin @p index.
***************************************************************************/
GEnergy GModelSpectralBins::emax(const int& index) const
{
// Raise an exception if index is out of range
#if defined(G_RANGE_CHECK)
if (index < 0 || index >= bins()) {
throw GException::out_of_range(G_EMAX_GET, "Bin index", index, bins());
}
#endif
// Retrieve energy
GEnergy energy;
energy.MeV(m_emax[index].value());
// Return energy
return energy;
}
/***********************************************************************//**
* @brief Set lower energy limit of bin
*
* @param[in] index Bin index [0,...,bins()-1].
* @param[in] emin Lower energy limit of bin @p index.
*
* @exception GException::out_of_range
* Index is out of range.
*
* Sets the lower energy limit of bin @p index.
***************************************************************************/
void GModelSpectralBins::emin(const int& index, const GEnergy& emin)
{
// Raise an exception if index is out of range
#if defined(G_RANGE_CHECK)
if (index < 0 || index >= bins()) {
throw GException::out_of_range(G_EMIN_SET, "Bin index", index, bins());
}
#endif
// Set energy
m_emin[index].value(emin.MeV());
// Set pre-computation cache
set_cache();
// Return
return;
}
/***********************************************************************//**
* @brief Set upper energy limit of bin
*
* @param[in] index Bin index [0,...,bins()-1].
* @param[in] emax Upper energy limit of bin @p index.
*
* @exception GException::out_of_range
* Index is out of range.
*
* Sets the upper energy limit of bin @p index.
***************************************************************************/
void GModelSpectralBins::emax(const int& index, const GEnergy& emax)
{
// Raise an exception if index is out of range
#if defined(G_RANGE_CHECK)
if (index < 0 || index >= bins()) {
throw GException::out_of_range(G_EMAX_SET, "Bin index", index, bins());
}
#endif
// Set energy
m_emax[index].value(emax.MeV());
// Set pre-computation cache
set_cache();
// Return
return;
}
/***********************************************************************//**
* @brief Return bin intensity
*
* @param[in] index Bin index [0,...,bins()-1].
* @return Intensity of bin @p index.
*
* @exception GException::out_of_range
* Index is out of range.
*
* Returns the intensity of bin @p index.
***************************************************************************/
double GModelSpectralBins::intensity(const int& index) const
{
// Raise an exception if index is out of range
#if defined(G_RANGE_CHECK)
if (index < 0 || index >= bins()) {
throw GException::out_of_range(G_INTENSITY_GET, "Bin index", index, bins());
}
#endif
// Return intensity
return (m_values[index].value());
}
/***********************************************************************//**
* @brief Set bin intensity
*
* @param[in] index Bin index [0,...,bins()-1].
* @param[in] intensity Intensity of bin @p index.
*
* @exception GException::out_of_range
* Index is out of range.
*
* Set the intensity of bin @p index.
***************************************************************************/
void GModelSpectralBins::intensity(const int& index, const double& intensity)
{
// Raise an exception if index is out of range
#if defined(G_RANGE_CHECK)
if (index < 0 || index >= bins()) {
throw GException::out_of_range(G_INTENSITY_SET, "Bin index", index, bins());
}
#endif
// Set intensity
m_values[index].value(intensity);
// Return
return;
}
/***********************************************************************//**
* @brief Print bin function information
*
* @param[in] chatter Chattiness.
* @return String containing bin function information.
***************************************************************************/
std::string GModelSpectralBins::print(const GChatter& chatter) const
{
// Initialise result string
std::string result;
// Continue only if chatter is not silent
if (chatter != SILENT) {
// Append header
result.append("=== GModelSpectralBins ===");
// Append information
result.append("\n"+gammalib::parformat("Number of bins"));
result.append(gammalib::str(bins()));
result.append("\n"+gammalib::parformat("Number of parameters"));
result.append(gammalib::str(size()));
for (int i = 0; i < size(); ++i) {
result.append("\n"+m_pars[i]->print(chatter));
}
} // endif: chatter was not silent
// Return result
return result;
}
/*==========================================================================
= =
= Private methods =
= =
==========================================================================*/
/***********************************************************************//**
* @brief Initialise class members
***************************************************************************/
void GModelSpectralBins::init_members(void)
{
// Initialise powerlaw index
m_index.clear();
m_index.name("Index");
m_index.scale(1.0);
m_index.value(-2.0); // default: -2.0
m_index.range(-10.0,+10.0); // range: [-10,+10]
m_index.fix();
m_index.gradient(0.0);
m_index.has_grad(true);
// Initialise bin parameter vectors
m_emin.clear();
m_emax.clear();
m_values.clear();
// Initialise evaluation cache
m_epivot.clear();
// Initialise MC cache
m_mc_emin.clear();
m_mc_emax.clear();
m_mc_cum.clear();
m_mc_min.clear();
m_mc_max.clear();
m_mc_exp.clear();
// Update parameter mapping
update_pars();
// Return
return;
}
/***********************************************************************//**
* @brief Copy class members
*
* @param[in] model Spectral bin function.
***************************************************************************/
void GModelSpectralBins::copy_members(const GModelSpectralBins& model)
{
// Copy bin energies and values
m_index = model.m_index;
m_emin = model.m_emin;
m_emax = model.m_emax;
m_values = model.m_values;
// Copy evluation cache
m_epivot = model.m_epivot;
// Copy MC cache
m_mc_emin = model.m_mc_emin;
m_mc_emax = model.m_mc_emax;
m_mc_cum = model.m_mc_cum;
m_mc_min = model.m_mc_min;
m_mc_max = model.m_mc_max;
m_mc_exp = model.m_mc_exp;
// Update parameter mapping
update_pars();
// Return
return;
}
/***********************************************************************//**
* @brief Delete class members
***************************************************************************/
void GModelSpectralBins::free_members(void)
{
// Return
return;
}
/***********************************************************************//**
* @brief Return bin index for energy
*
* @param[in] energy Energy.
* @return Bin index (-1 if energy bin was not found).
***************************************************************************/
int GModelSpectralBins::bin_index(const GEnergy& energy) const
{
// Initialise bin index
int bin = -1;
// Get energy in MeV
double energy_MeV = energy.MeV();
// Search bin index
for (int i = 0; i < bins(); ++i) {
if (energy_MeV >= m_emin[i].value() && energy_MeV < m_emax[i].value()) {
bin = i;
break;
}
}
// Return bin index
return bin;
}
/***********************************************************************//**
* @brief Update parameter mapping
*
* Sets the parameter pointers in the m_pars array, enabling iterating over
* all model parameters. This method needs to be called after changing the
* number of bins in the spectral model. The method needs not to be called
* after value update.
***************************************************************************/
void GModelSpectralBins::update_pars(void)
{
// Clear parameter pointer(s)
m_pars.clear();
// Push back common spectral index
m_pars.push_back(&m_index);
// Set parameter pointers for all bins
for (int i = 0; i < bins(); ++i) {
// Set parameter names
std::string lowerlimit_name = "LowerLimit" + gammalib::str(i);
std::string upperlimit_name = "UpperLimit" + gammalib::str(i);
std::string intensity_name = "Intensity" + gammalib::str(i);
// Set lower limit attributes
m_emin[i].name(lowerlimit_name);
m_emin[i].unit("MeV");
m_emin[i].has_grad(false);
// Set upper limit attributes
m_emax[i].name(upperlimit_name);
m_emax[i].unit("MeV");
m_emax[i].has_grad(false);
// Set intensity attributes
m_values[i].name(intensity_name);
m_values[i].unit("ph/cm2/s/MeV");
m_values[i].has_grad(true);
// Set pointer
m_pars.push_back(&(m_emin[i]));
m_pars.push_back(&(m_emax[i]));
m_pars.push_back(&(m_values[i]));
} // endfor: looped over bins
// Return
return;
}
/***********************************************************************//**
* @brief Set cache
*
* Sets the computation cache. The method computes for the time being the
* pivot energies for all bins in MeV.
***************************************************************************/
void GModelSpectralBins::set_cache(void) const
{
// Clear cache
m_epivot.clear();
// Compute pivot energies for all bins
for (int i = 0; i < bins(); ++i) {
double epivot = std::sqrt(m_emin[i].value() * m_emax[i].value());
m_epivot.push_back(epivot);
}
// Return
return;
}
/***********************************************************************//**
* @brief Set MC pre-computation cache
*
* @param[in] emin Minimum energy.
* @param[in] emax Maximum energy.
*
* This method sets up an array of indices and the cumulative distribution
* function needed for MC simulations.
***************************************************************************/
void GModelSpectralBins::mc_update(const GEnergy& emin,
const GEnergy& emax) const
{
// Check if we need to update the cache
if (emin != m_mc_emin || emax != m_mc_emax) {
// Store new energy interval
m_mc_emin = emin;
m_mc_emax = emax;
// Initialise cache
m_mc_cum.clear();
m_mc_min.clear();
m_mc_max.clear();
m_mc_exp.clear();
// Get energy range in MeV
double e_min = emin.MeV();
double e_max = emax.MeV();
// Continue only if e_max > e_min
if (e_max > e_min) {
// Loop over all bins
for (int ibin = 0; ibin < bins(); ++ibin) {
// Get energy boundaires of bin in MeV
double e_bin_min = m_emin[ibin].value();
double e_bin_max = m_emax[ibin].value();
// Skip bins that do not overlap with energy range
if (e_min >= e_bin_max || e_max < e_bin_min) {
continue;
}
// Raise lower boundary to minimum energy
if (e_bin_min < e_min) {
e_bin_min = e_min;
}
// Lower upper boundary to maximum energy
if (e_bin_max > e_max) {
e_bin_max = e_max;
}
// If energy interval is positive then compute flux
if (e_bin_max > e_bin_min) {
// Get index
double index = m_index.value();
// Compute flux
double flux = m_values[ibin].value() *
gammalib::plaw_photon_flux(e_bin_min,
e_bin_max,
m_epivot[ibin],
index);
// Push results in cache
m_mc_cum.push_back(flux);
m_mc_min.push_back(e_bin_min);
m_mc_max.push_back(e_bin_max);
m_mc_exp.push_back(index);
} // endif: energy interval was positive
} // endfor: looped over all spectral bins
// Build cumulative distribution
for (int i = 1; i < m_mc_cum.size(); ++i) {
m_mc_cum[i] += m_mc_cum[i-1];
}
double norm = m_mc_cum[m_mc_cum.size()-1];
if (norm > 0.0) {
for (int i = 0; i < m_mc_cum.size(); ++i) {
m_mc_cum[i] /= norm;
}
}
// Set MC values
for (int i = 0; i < m_mc_cum.size(); ++i) {
// Compute exponent
double exponent = m_mc_exp[i] + 1.0;
// Exponent dependend computation
if (std::abs(exponent) > 1.0e-11) {
// If the exponent is too small then use lower energy
// boundary
if (exponent < -50.0) {
m_mc_exp[i] = 0.0;
m_mc_min[i] = std::log(m_mc_min[i]);
m_mc_max[i] = m_mc_min[i];
}
// ... otherwise if exponent is too large then use
// upper energy boundary
else if (exponent > +50.0) {
m_mc_exp[i] = 0.0;
m_mc_min[i] = std::log(m_mc_max[i]);
m_mc_max[i] = m_mc_min[i];
}
// ... otherwise use transformation formula
else {
m_mc_exp[i] = exponent;
m_mc_min[i] = std::pow(m_mc_min[i], exponent);
m_mc_max[i] = std::pow(m_mc_max[i], exponent);
}
}
else {
m_mc_exp[i] = 0.0;
m_mc_min[i] = std::log(m_mc_min[i]);
m_mc_max[i] = std::log(m_mc_max[i]);
}
} // endfor: set MC values
} // endif: e_max > e_min
} // endif: Update was required
// Return
return;
}