Commit 7e4a03953ddb55949884cf30fcf8bf5d81058a6e
1 parent
9c93dcc7
Remove cast.
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126 additions
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129 deletions
examples/make_binned_analysis.py
| ... | ... | @@ -4,10 +4,7 @@ |
| 4 | 4 | # ctools. If matplotlib is installed, a counts spectrum and an offset |
| 5 | 5 | # histogram will be displayed. |
| 6 | 6 | # |
| 7 | -# Required 3rd party modules: | |
| 8 | -# None | |
| 9 | -# | |
| 10 | -# Copyright (C) 2011 Jurgen Knodlseder | |
| 7 | +# Copyright (C) 2011-2012 Jurgen Knodlseder | |
| 11 | 8 | # |
| 12 | 9 | # This program is free software: you can redistribute it and/or modify |
| 13 | 10 | # it under the terms of the GNU General Public License as published by |
| ... | ... | @@ -29,6 +26,11 @@ from math import * |
| 29 | 26 | import os |
| 30 | 27 | import glob |
| 31 | 28 | import sys |
| 29 | +try: | |
| 30 | + import matplotlib.pyplot as plt | |
| 31 | + has_matplotlib = True | |
| 32 | +except: | |
| 33 | + has_matplotlib = False | |
| 32 | 34 | |
| 33 | 35 | |
| 34 | 36 | # ============================= # |
| ... | ... | @@ -224,7 +226,10 @@ def pipeline_v2(): |
| 224 | 226 | #sys.stdout.write(like.obs().models()+"\n") |
| 225 | 227 | |
| 226 | 228 | # Plot counts |
| 227 | - plot_counts(bin.obs()) | |
| 229 | + if has_matplotlib: | |
| 230 | + plot_counts(bin.obs()) | |
| 231 | + else: | |
| 232 | + sys.stdout.write("Matplotlib is not (correctly) installed on your system. No counts spectra are shown.\n") | |
| 228 | 233 | |
| 229 | 234 | # Return |
| 230 | 235 | return |
| ... | ... | @@ -237,139 +242,131 @@ def plot_counts(observations): |
| 237 | 242 | """ |
| 238 | 243 | Plot counts. |
| 239 | 244 | """ |
| 240 | - # Only proceed if matplotlib is available | |
| 241 | - try: | |
| 242 | - # Import matplotlib | |
| 243 | - import matplotlib.pyplot as plt | |
| 244 | - | |
| 245 | - # Set legend fontsize | |
| 246 | - params = {'legend.fontsize': 10} | |
| 247 | - plt.rcParams.update(params) | |
| 248 | - | |
| 249 | - # Set plot styles | |
| 250 | - styles = ['b-', 'g-', 'y-', 'n-'] | |
| 251 | - | |
| 252 | - # Dump header | |
| 253 | - sys.stdout.write("\n") | |
| 254 | - sys.stdout.write("Make plots (using matplotlib):\n") | |
| 255 | - sys.stdout.write("==============================\n") | |
| 256 | - | |
| 257 | - # Create figure 1 | |
| 258 | - plt.figure(1,figsize=(12,6)) | |
| 259 | - plt.subplots_adjust(hspace=.7) | |
| 245 | + # Set legend fontsize | |
| 246 | + params = {'legend.fontsize': 10} | |
| 247 | + plt.rcParams.update(params) | |
| 260 | 248 | |
| 261 | - # Create subplot 1 | |
| 262 | - plt.subplot(121) | |
| 263 | - plt.title("Spectrum (summed over all pixels)") | |
| 264 | - | |
| 265 | - # Loop over observations | |
| 266 | - for obs in observations: | |
| 267 | - | |
| 268 | - # Get event cube | |
| 269 | - cube = cast_GCTAEventCube(obs.events()) | |
| 270 | - | |
| 271 | - # Create energy axis | |
| 272 | - energy = [] | |
| 273 | - ebounds = cube.ebounds() | |
| 274 | - for i in range(ebounds.size()): | |
| 275 | - energy.append(ebounds.elogmean(i).TeV()) | |
| 249 | + # Set plot styles | |
| 250 | + styles = ['b-', 'g-', 'y-', 'n-'] | |
| 276 | 251 | |
| 277 | - # Create spectrum | |
| 278 | - sys.stdout.write("Extract data:\n") | |
| 279 | - counts = [0.0 for i in range(ebounds.size())] | |
| 280 | - for bin in cube: | |
| 281 | - index = ebounds.index(bin.energy()) | |
| 282 | - counts[index] = counts[index] + bin.counts() | |
| 252 | + # Dump header | |
| 253 | + sys.stdout.write("\n") | |
| 254 | + sys.stdout.write("Make plots (using matplotlib):\n") | |
| 255 | + sys.stdout.write("==============================\n") | |
| 256 | + | |
| 257 | + # Create figure 1 | |
| 258 | + plt.figure(1,figsize=(12,6)) | |
| 259 | + plt.subplots_adjust(hspace=.7) | |
| 283 | 260 | |
| 284 | - # Create error bars | |
| 285 | - error = [sqrt(c) for c in counts] | |
| 286 | - | |
| 287 | - # Plot spectrum | |
| 288 | - plt.loglog(energy, counts, 'ro', label='data') | |
| 289 | - plt.errorbar(energy, counts, error, fmt=None, ecolor='r') | |
| 290 | - | |
| 291 | - # Extract models | |
| 292 | - sys.stdout.write("Extract models:\n") | |
| 293 | - sum_model = [0.0 for i in range(ebounds.size())] | |
| 294 | - for k, m in enumerate(observations.models()): | |
| 295 | - sys.stdout.write("- "+m.name()+"\n") | |
| 296 | - model = [0.0 for i in range(ebounds.size())] | |
| 297 | - for bin in cube: | |
| 298 | - index = ebounds.index(bin.energy()) | |
| 299 | - prob = m.eval(bin, obs) | |
| 300 | - model[index] = model[index] + prob * bin.size() | |
| 301 | - for i in range(ebounds.size()): | |
| 302 | - sum_model[i] = sum_model[i] + model[i] | |
| 303 | - plt.loglog(energy, model, styles[k], label=m.name()) | |
| 304 | - plt.loglog(energy, sum_model, 'r-', label='total') | |
| 305 | - | |
| 306 | - # Put labels | |
| 307 | - plt.xlabel("Energy (TeV)") | |
| 308 | - plt.ylabel("Counts") | |
| 309 | - plt.legend(loc="lower left") | |
| 310 | - | |
| 311 | - # Create subplot 2 | |
| 312 | - plt.subplot(122) | |
| 313 | - plt.title("Offset (summed over all energies)") | |
| 314 | - | |
| 315 | - # Set Crab direction | |
| 316 | - crab = GSkyDir() | |
| 317 | - crab.radec_deg(83.63, 22.01) | |
| 261 | + # Create subplot 1 | |
| 262 | + plt.subplot(121) | |
| 263 | + plt.title("Spectrum (summed over all pixels)") | |
| 264 | + | |
| 265 | + # Loop over observations | |
| 266 | + for obs in observations: | |
| 267 | + | |
| 268 | + # Get event cube | |
| 269 | + cube = obs.events() | |
| 318 | 270 | |
| 319 | - # Loop over observations | |
| 320 | - for obs in observations: | |
| 271 | + # Create energy axis | |
| 272 | + energy = [] | |
| 273 | + ebounds = cube.ebounds() | |
| 274 | + for i in range(ebounds.size()): | |
| 275 | + energy.append(ebounds.elogmean(i).TeV()) | |
| 276 | + | |
| 277 | + # Create spectrum | |
| 278 | + sys.stdout.write("Extract data:\n") | |
| 279 | + counts = [0.0 for i in range(ebounds.size())] | |
| 280 | + for bin in cube: | |
| 281 | + index = ebounds.index(bin.energy()) | |
| 282 | + counts[index] = counts[index] + bin.counts() | |
| 283 | + | |
| 284 | + # Create error bars | |
| 285 | + error = [sqrt(c) for c in counts] | |
| 286 | + | |
| 287 | + # Plot spectrum | |
| 288 | + plt.loglog(energy, counts, 'ro', label='data') | |
| 289 | + plt.errorbar(energy, counts, error, fmt=None, ecolor='r') | |
| 290 | + | |
| 291 | + # Extract models | |
| 292 | + sys.stdout.write("Extract models:\n") | |
| 293 | + sum_model = [0.0 for i in range(ebounds.size())] | |
| 294 | + for k, m in enumerate(observations.models()): | |
| 295 | + sys.stdout.write("- "+m.name()+"\n") | |
| 296 | + model = [0.0 for i in range(ebounds.size())] | |
| 297 | + for bin in cube: | |
| 298 | + index = ebounds.index(bin.energy()) | |
| 299 | + prob = m.eval(bin, obs) | |
| 300 | + model[index] = model[index] + prob * bin.size() | |
| 301 | + for i in range(ebounds.size()): | |
| 302 | + sum_model[i] = sum_model[i] + model[i] | |
| 303 | + plt.loglog(energy, model, styles[k], label=m.name()) | |
| 304 | + plt.loglog(energy, sum_model, 'r-', label='total') | |
| 305 | + | |
| 306 | + # Put labels | |
| 307 | + plt.xlabel("Energy (TeV)") | |
| 308 | + plt.ylabel("Counts") | |
| 309 | + plt.legend(loc="lower left") | |
| 310 | + | |
| 311 | + # Create subplot 2 | |
| 312 | + plt.subplot(122) | |
| 313 | + plt.title("Offset (summed over all energies)") | |
| 314 | + | |
| 315 | + # Set Crab direction | |
| 316 | + crab = GSkyDir() | |
| 317 | + crab.radec_deg(83.63, 22.01) | |
| 318 | + | |
| 319 | + # Loop over observations | |
| 320 | + for obs in observations: | |
| 321 | + | |
| 322 | + # Get event cube | |
| 323 | + cube = obs.events() | |
| 321 | 324 | |
| 322 | - # Get event cube | |
| 323 | - cube = cast_GCTAEventCube(obs.events()) | |
| 324 | - | |
| 325 | - # Create offset histogram | |
| 326 | - sys.stdout.write("Extract data:\n") | |
| 327 | - nx = 30 | |
| 328 | - doffset2 = 0.01 | |
| 329 | - offset2 = [(i+0.5)*doffset2 for i in range(nx)] | |
| 330 | - counts = [0.0 for i in range(nx)] | |
| 325 | + # Create offset histogram | |
| 326 | + sys.stdout.write("Extract data:\n") | |
| 327 | + nx = 30 | |
| 328 | + doffset2 = 0.01 | |
| 329 | + offset2 = [(i+0.5)*doffset2 for i in range(nx)] | |
| 330 | + counts = [0.0 for i in range(nx)] | |
| 331 | + for bin in cube: | |
| 332 | + off = GCTAInstDir(bin.dir()).dist_deg(crab) | |
| 333 | + off2 = off*off | |
| 334 | + index = int(off2/doffset2) | |
| 335 | + if index < nx: | |
| 336 | + counts[index] = counts[index] + bin.counts() | |
| 337 | + | |
| 338 | + # Create error bars | |
| 339 | + error = [sqrt(c) for c in counts] | |
| 340 | + | |
| 341 | + # Plot distribution | |
| 342 | + plt.semilogy(offset2, counts, 'ro', label='data') | |
| 343 | + | |
| 344 | + # Extract models | |
| 345 | + sys.stdout.write("Extract models:\n") | |
| 346 | + sum_model = [0.0 for i in range(nx)] | |
| 347 | + for k, m in enumerate(observations.models()): | |
| 348 | + sys.stdout.write("- "+m.name()+"\n") | |
| 349 | + model = [0.0 for i in range(nx)] | |
| 331 | 350 | for bin in cube: |
| 332 | - off = bin.dir().dist_deg(crab) | |
| 351 | + off = GCTAInstDir(bin.dir()).dist_deg(crab) | |
| 333 | 352 | off2 = off*off |
| 334 | 353 | index = int(off2/doffset2) |
| 335 | 354 | if index < nx: |
| 336 | - counts[index] = counts[index] + bin.counts() | |
| 337 | - | |
| 338 | - # Create error bars | |
| 339 | - error = [sqrt(c) for c in counts] | |
| 340 | - | |
| 341 | - # Plot distribution | |
| 342 | - plt.semilogy(offset2, counts, 'ro', label='data') | |
| 343 | - | |
| 344 | - # Extract models | |
| 345 | - sys.stdout.write("Extract models:\n") | |
| 346 | - sum_model = [0.0 for i in range(nx)] | |
| 347 | - for k, m in enumerate(observations.models()): | |
| 348 | - sys.stdout.write("- "+m.name()+"\n") | |
| 349 | - model = [0.0 for i in range(nx)] | |
| 350 | - for bin in cube: | |
| 351 | - off = bin.dir().dist_deg(crab) | |
| 352 | - off2 = off*off | |
| 353 | - index = int(off2/doffset2) | |
| 354 | - if index < nx: | |
| 355 | - prob = m.eval(bin, obs) | |
| 356 | - model[index] = model[index] + prob * bin.size() | |
| 357 | - for i in range(nx): | |
| 358 | - sum_model[i] = sum_model[i] + model[i] | |
| 359 | - plt.plot(offset2, model, styles[k], label=m.name()) | |
| 360 | - plt.plot(offset2, sum_model, 'r-', label='total') | |
| 361 | - plt.ylim(ymin=0.1) | |
| 362 | - | |
| 363 | - # Put labels | |
| 364 | - plt.xlabel("Offset (deg^2)") | |
| 365 | - plt.ylabel("Counts") | |
| 366 | - plt.legend(loc="upper right") | |
| 367 | - | |
| 368 | - # Show counts spectra | |
| 369 | - plt.show() | |
| 370 | - | |
| 371 | - except: | |
| 372 | - sys.stdout.write("Matplotlib is not (correctly) installed on your system. No counts spectra are shown.\n") | |
| 355 | + prob = m.eval(bin, obs) | |
| 356 | + model[index] = model[index] + prob * bin.size() | |
| 357 | + for i in range(nx): | |
| 358 | + sum_model[i] = sum_model[i] + model[i] | |
| 359 | + plt.plot(offset2, model, styles[k], label=m.name()) | |
| 360 | + plt.plot(offset2, sum_model, 'r-', label='total') | |
| 361 | + plt.ylim(ymin=0.1) | |
| 362 | + | |
| 363 | + # Put labels | |
| 364 | + plt.xlabel("Offset (deg^2)") | |
| 365 | + plt.ylabel("Counts") | |
| 366 | + plt.legend(loc="upper right") | |
| 367 | + | |
| 368 | + # Show counts spectra | |
| 369 | + plt.show() | |
| 373 | 370 | |
| 374 | 371 | # Return |
| 375 | 372 | return | ... | ... |