GCTAEventList.cpp
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/***************************************************************************
* GCTAEventList.cpp - CTA event atom container class *
* ----------------------------------------------------------------------- *
* copyright (C) 2010-2015 by Juergen Knoedlseder *
* ----------------------------------------------------------------------- *
* *
* This program is free software: you can redistribute it and/or modify *
* it under the terms of the GNU General Public License as published by *
* the Free Software Foundation, either version 3 of the License, or *
* (at your option) any later version. *
* *
* This program is distributed in the hope that it will be useful, *
* but WITHOUT ANY WARRANTY; without even the implied warranty of *
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the *
* GNU General Public License for more details. *
* *
* You should have received a copy of the GNU General Public License *
* along with this program. If not, see <http://www.gnu.org/licenses/>. *
* *
***************************************************************************/
/**
* @file GCTAEventList.cpp
* @brief CTA event atom container class implementation
* @author Juergen Knoedlseder
*/
/* __ Includes ___________________________________________________________ */
#ifdef HAVE_CONFIG_H
#include <config.h>
#endif
#include "GCTAEventList.hpp"
#include "GCTAException.hpp"
#include "GCTASupport.hpp"
#include "GTools.hpp"
#include "GMath.hpp"
#include "GFits.hpp"
#include "GFitsTableBitCol.hpp"
#include "GFitsTableFloatCol.hpp"
#include "GFitsTableDoubleCol.hpp"
#include "GFitsTableULongCol.hpp"
#include "GFitsTableShortCol.hpp"
#include "GFitsTableStringCol.hpp"
#include "GTime.hpp"
#include "GTimeReference.hpp"
/* __ Method name definitions ____________________________________________ */
#define G_OPERATOR "GCTAEventList::operator[](int&)"
#define G_ROI "GCTAEventList::roi(GRoi&)"
#define G_READ_DS_EBOUNDS "GCTAEventList::read_ds_ebounds(GFitsHDU*)"
/* __ Macros _____________________________________________________________ */
/* __ Coding definitions _________________________________________________ */
/* __ Debug definitions __________________________________________________ */
/*==========================================================================
= =
= Constructors/destructors =
= =
==========================================================================*/
/***********************************************************************//**
* @brief Void constructor
***************************************************************************/
GCTAEventList::GCTAEventList(void) : GEventList()
{
// Initialise members
init_members();
// Return
return;
}
/***********************************************************************//**
* @brief File name constructor
*
* @param[in] filename Counts cube filename.
*
* Construct event list object by loading the events from a FITS file.
***************************************************************************/
GCTAEventList::GCTAEventList(const std::string& filename) : GEventList()
{
// Initialise members
init_members();
// Load event list
load(filename);
// Return
return;
}
/***********************************************************************//**
* @brief Copy constructor
*
* @param[in] list Event list.
***************************************************************************/
GCTAEventList::GCTAEventList(const GCTAEventList& list) : GEventList(list)
{
// Initialise members
init_members();
// Copy members
copy_members(list);
// Return
return;
}
/***********************************************************************//**
* @brief Destructor
***************************************************************************/
GCTAEventList::~GCTAEventList(void)
{
// Free members
free_members();
// Return
return;
}
/*==========================================================================
= =
= Operators =
= =
==========================================================================*/
/***********************************************************************//**
* @brief Assignment operator
*
* @param[in] list Event list.
* @return Event list.
***************************************************************************/
GCTAEventList& GCTAEventList::operator=(const GCTAEventList& list)
{
// Execute only if object is not identical
if (this != &list) {
// Copy base class members
this->GEventList::operator=(list);
// Free members
free_members();
// Initialise members
init_members();
// Copy members
copy_members(list);
} // endif: object was not identical
// Return this object
return *this;
}
/***********************************************************************//**
* @brief Event atom access operator
*
* @param[in] index Event index [0,...,size()-1].
*
* @exception GException::out_of_range
* Event index outside valid range.
*
* Returns pointer to an event atom.
***************************************************************************/
GCTAEventAtom* GCTAEventList::operator[](const int& index)
{
// Optionally check if the index is valid
#if defined(G_RANGE_CHECK)
if (index < 0 || index >= size()) {
throw GException::out_of_range(G_OPERATOR, index, 0, size()-1);
}
#endif
// Return pointer
return (&(m_events[index]));
}
/***********************************************************************//**
* @brief Event atom access operator
*
* @param[in] index Event index [0,...,size()-1].
*
* @exception GException::out_of_range
* Event index outside valid range.
*
* Returns pointer to an event atom.
***************************************************************************/
const GCTAEventAtom* GCTAEventList::operator[](const int& index) const
{
// Optionally check if the index is valid
#if defined(G_RANGE_CHECK)
if (index < 0 || index >= size()) {
throw GException::out_of_range(G_OPERATOR, index, 0, size()-1);
}
#endif
// Return pointer
return (&(m_events[index]));
}
/*==========================================================================
= =
= Public methods =
= =
==========================================================================*/
/***********************************************************************//**
* @brief Clear event list
*
* This method properly resets the object to an initial state.
***************************************************************************/
void GCTAEventList::clear(void)
{
// Free class members (base and derived classes, derived class first)
free_members();
this->GEventList::free_members();
this->GEvents::free_members();
// Initialise members
this->GEvents::init_members();
this->GEventList::init_members();
init_members();
// Return
return;
}
/***********************************************************************//**
* @brief Clone event list
*
* @return Pointer to deep copy of event list.
***************************************************************************/
GCTAEventList* GCTAEventList::clone(void) const
{
// Clone event list
return new GCTAEventList(*this);
}
/***********************************************************************//**
* @brief Load events from event FITS file.
*
* @param[in] filename Name of FITS file from which events are loaded.
*
* Load CTA events from the EVENTS extension EVENTS, read the region of
* interest and the energy boundaries from the data selection keywords,
* and read the Good Time Intervals from the GTI extension.
*
* The method clears the object before loading, thus any events residing in
* the object before loading will be lost.
***************************************************************************/
void GCTAEventList::load(const std::string& filename)
{
// Clear object
clear();
// Open FITS file
GFits file(filename);
// Read event list
read(file);
// Close FITS file
file.close();
// Return
return;
}
/***********************************************************************//**
* @brief Save CTA events into FITS file.
*
* @param[in] filename FITS filename.
* @param[in] clobber Overwrite existing FITS file (default=false).
*
* Write the CTA event list into FITS file.
***************************************************************************/
void GCTAEventList::save(const std::string& filename,
const bool& clobber) const
{
// Create empty FITS file
GFits fits;
// Write event list
write(fits);
// Save FITS file
fits.saveto(filename, clobber);
// Return
return;
}
/***********************************************************************//**
* @brief Read CTA events from FITS file.
*
* @param[in] fits FITS file.
*
* This method reads the CTA event list from a FITS file. The extension name
* for the events is expected to be "EVENTS". The header of the HDU is
* scanned for data selection keywords that define the energy boundaries and
* the region of interest. So far, no scan is performed for time intervals.
*
* If present, Good Time Intervals will be read from an extension names
* "GTI". If no "GTI" extension is present, a single Good Time Interval will
* be assumed based on the TSTART and TSTOP keywords.
*
* The method clears the object before reading, thus any information residing
* in the event list prior to reading will be lost.
*
* @todo Ultimately, any events file should have a GTI extension, hence the
* extraction of GTIs from TSTART and TSTOP should not be necessary.
***************************************************************************/
void GCTAEventList::read(const GFits& fits)
{
// Clear object
clear();
// Get event list HDU
const GFitsTable& events = *fits.table("EVENTS");
// If we have a GTI extension, then read Good Time Intervals from that
// extension
if (fits.contains("GTI")) {
const GFitsTable& gti = *fits.table("GTI");
m_gti.read(gti);
}
// ... otherwise build GTI from TSTART and TSTOP
else {
// Read start and stop time
double tstart = events.real("TSTART");
double tstop = events.real("TSTOP");
// Create time reference from header information
GTimeReference timeref(events);
// Set start and stop time
GTime start(tstart);
GTime stop(tstop);
// Append start and stop time as single time interval to GTI
m_gti.append(start, stop);
// Set GTI time reference
m_gti.reference(timeref);
} // endelse: GTI built from TSTART and TSTOP
// Load event data
read_events(events);
// Read region of interest from data selection keyword
m_roi = gammalib::read_ds_roi(events);
// Read energy boundaries from data selection keyword
m_ebounds = gammalib::read_ds_ebounds(events);
// Return
return;
}
/***********************************************************************//**
* @brief Write CTA events into FITS file.
*
* @param[in] file FITS file.
*
* Write the CTA event list into FITS file.
*
* @todo The TELMASK column is allocated with a dummy length of 100.
* @todo Implement agreed column format
***************************************************************************/
void GCTAEventList::write(GFits& file) const
{
// Allocate FITS binary table HDU
GFitsBinTable* events = new GFitsBinTable;
// Write events
write_events(*events);
// Write data selection keywords
write_ds_keys(*events);
// Append event table to FITS file
file.append(*events);
// Free binary table
delete events;
// Append GTI to FITS file
gti().write(file);
// Return
return;
}
/***********************************************************************//**
* @brief Set ROI
*
* @param[in] roi ROI.
*
* @exception GCTAException::bad_roi_type
* ROI is not of type GCTARoi.
***************************************************************************/
void GCTAEventList::roi(const GRoi& roi)
{
// Cast ROI dynamically
const GCTARoi* ptr = dynamic_cast<const GCTARoi*>(&roi);
// Throw exception if ROI is not of correct type
if (ptr == NULL) {
throw GCTAException::bad_roi_type(G_ROI);
}
// Set ROI
m_roi = *ptr;
// Return
return;
}
/***********************************************************************//**
* @brief Print event list information
*
* @param[in] chatter Chattiness (defaults to NORMAL).
* @return String containing event list information.
***************************************************************************/
std::string GCTAEventList::print(const GChatter& chatter) const
{
// Initialise result string
std::string result;
// Continue only if chatter is not silent
if (chatter != SILENT) {
// Append header
result.append("=== GCTAEventList ===");
// Append information
result.append("\n"+gammalib::parformat("Number of events") +
gammalib::str(size()));
// Append GTI interval
result.append("\n"+gammalib::parformat("Time interval"));
if (gti().size() > 0) {
result.append(gammalib::str(tstart().mjd()));
result.append(" - ");
result.append(gammalib::str(tstop().mjd())+" days");
}
else {
result.append("not defined");
}
// Append energy intervals
if (gammalib::reduce(chatter) > SILENT) {
if (ebounds().size() > 0) {
result.append("\n"+ebounds().print(gammalib::reduce(chatter)));
}
else {
result.append("\n"+gammalib::parformat("Energy intervals") +
"not defined");
}
}
else {
result.append("\n"+gammalib::parformat("Energy interval"));
if (ebounds().size() > 0) {
result.append(gammalib::str(emin().TeV()));
result.append(" - ");
result.append(gammalib::str(emax().TeV())+" TeV");
}
else {
result.append("not defined");
}
}
// Append ROI
if (gammalib::reduce(chatter) > SILENT) {
if (roi().radius() > 0) {
result.append("\n"+roi().print(gammalib::reduce(chatter)));
}
else {
result.append("\n"+gammalib::parformat("Region of interest") +
"not defined");
}
}
else {
result.append("\n"+gammalib::parformat("Region of interest"));
if (roi().radius() > 0) {
result.append(roi().centre().print());
result.append(" Radius=");
result.append(gammalib::str(roi().radius())+" deg");
}
else {
result.append("not defined");
}
}
// EXPLICIT: Append IRF cache
if (chatter >= EXPLICIT) {
for (int i = 0; i < m_irf_names.size(); ++i) {
result.append("\n"+gammalib::parformat("IRF cache " +
gammalib::str(i)));
result.append(m_irf_names[i]+" = ");
int num = 0;
for (int k = 0; k < size(); ++k) {
if ((m_irf_values[i])[k] != -1.0) {
num++;
}
}
result.append(gammalib::str(num)+" values");
}
} // endif: chatter was explicit
} // endif: chatter was not silent
// Return result
return result;
}
/***********************************************************************//**
* @brief Append event atom to event list
*
* @param[in] event Event.
*
* Appends an event atom to the event list.
***************************************************************************/
void GCTAEventList::append(const GCTAEventAtom& event)
{
// Append event
m_events.push_back(event);
// Set event index
int index = m_events.size()-1;
m_events[index].m_index = index;
// Return
return;
}
/*==========================================================================
= =
= Private methods =
= =
==========================================================================*/
/***********************************************************************//**
* @brief Initialise class members
***************************************************************************/
void GCTAEventList::init_members(void)
{
// Initialise members
m_roi.clear();
m_events.clear();
m_columns.clear();
m_has_phase = false;
m_has_detxy = true;
// Initialise cache
m_irf_names.clear();
m_irf_values.clear();
// Return
return;
}
/***********************************************************************//**
* @brief Copy class members
*
* @param[in] list Event list.
***************************************************************************/
void GCTAEventList::copy_members(const GCTAEventList& list)
{
// Copy members
m_roi = list.m_roi;
m_events = list.m_events;
m_has_phase = list.m_has_phase;
m_has_detxy = list.m_has_detxy;
// Copy cache
m_irf_names = list.m_irf_names;
m_irf_values = list.m_irf_values;
// Copy column pointers
m_columns.clear();
for (int i = 0; i < list.m_columns.size(); ++i) {
m_columns.push_back((list.m_columns[i]->clone()));
}
// Return
return;
}
/***********************************************************************//**
* @brief Delete class members
***************************************************************************/
void GCTAEventList::free_members(void)
{
// Free columns
for (int i = 0; i < m_columns.size(); ++i) {
delete m_columns[i];
m_columns[i] = NULL;
}
// Return
return;
}
/***********************************************************************//**
* @brief Read CTA events from FITS table
*
* @param[in] table FITS table.
*
* This method reads the CTA event list from a FITS table into memory.
* The following columns are mandatory in the FITS table:
*
* - EVENT_ID
* - TIME
* - RA
* - DEC
* - ENERGY
*
* Optionally, the
*
* - DETX
* - DETY
* - PHASE
*
* columns are read. Any other columns present in the FITS table will also be
* read, and written into the FITS table when the write_events() method is
* called.
***************************************************************************/
void GCTAEventList::read_events(const GFitsTable& table)
{
// Clear existing events
m_events.clear();
// Extract number of events in FITS file
int num = table.nrows();
// If there are events then load them
if (num > 0) {
// Reserve data
m_events.reserve(num);
// Get column pointers
const GFitsTableCol* ptr_eid = table["EVENT_ID"];
const GFitsTableCol* ptr_time = table["TIME"];
const GFitsTableCol* ptr_ra = table["RA"];
const GFitsTableCol* ptr_dec = table["DEC"];
const GFitsTableCol* ptr_energy = table["ENERGY"];
// Check for DETX and DETY columns
const GFitsTableCol* ptr_detx;
const GFitsTableCol* ptr_dety;
if (table.contains("DETX") && table.contains("DETY")) {
m_has_detxy = true;
ptr_detx = table["DETX"];
ptr_dety = table["DETY"];
}
else {
m_has_detxy = false;
}
// Check for PHASE column
const GFitsTableCol* ptr_phase;
if (table.contains("PHASE")) {
m_has_phase = true;
ptr_phase = table["PHASE"];
}
else {
m_has_phase = false;
}
// Copy data from columns into GCTAEventAtom objects
GCTAEventAtom event;
for (int i = 0; i < num; ++i) {
// Set mandatory information
event.m_time.set(ptr_time->real(i), m_gti.reference());
event.m_dir.dir().radec_deg(ptr_ra->real(i), ptr_dec->real(i));
event.m_energy.TeV(ptr_energy->real(i));
event.m_event_id = ptr_eid->integer(i);
event.m_index = i;
// If available, set detector coordinates in radians
if (m_has_detxy) {
event.m_dir.detx(ptr_detx->real(i)*gammalib::deg2rad);
event.m_dir.dety(ptr_dety->real(i)*gammalib::deg2rad);
}
// If available, set pulse phase
if (m_has_phase) {
event.m_phase = ptr_phase->real(i);
}
// Append event
m_events.push_back(event);
} // endfor: looped over all events
// Loop over table and find optional columns
for (int i = 0; i < table.ncols(); ++i) {
// Get column pointer
const GFitsTableCol* col = table[i];
// Get column name
const std::string name = col->name();
// If column was mandatory or optional then skip it ...
if (name == "EVENT_ID" ||
name == "TIME" ||
name == "RA" ||
name == "DEC" ||
name == "ENERGY" ||
name == "DETX" ||
name == "DETY" ||
name == "PHASE") {
continue;
}
// ... otherwise keep a copy
else {
m_columns.push_back(col->clone());
}
} // endfor: loop over optional columns
} // endif: there were events
// Return
return;
}
/***********************************************************************//**
* @brief Write CTA events into FITS table
*
* @param[in] hdu FITS binary table.
*
* Write the CTA event list into a FITS binary table.
*
* The following mandatory columns will be written into the FITS table:
*
* - EVENT_ID
* - TIME
* - RA
* - DEC
* - ENERGY
*
* If available, also the
*
* - DETX
* - DETY
* - PHASE
*
* columns are written. Any other columns that were read by the read_events()
* method will be also written into the table.
***************************************************************************/
void GCTAEventList::write_events(GFitsBinTable& hdu) const
{
// Set extension name
hdu.extname("EVENTS");
// If there are events then write them now
if (size() > 0) {
// Allocate mandatory columns
GFitsTableULongCol col_eid = GFitsTableULongCol("EVENT_ID", size());
GFitsTableDoubleCol col_time = GFitsTableDoubleCol("TIME", size());
GFitsTableFloatCol col_ra = GFitsTableFloatCol("RA", size());
GFitsTableFloatCol col_dec = GFitsTableFloatCol("DEC", size());
GFitsTableFloatCol col_energy = GFitsTableFloatCol("ENERGY", size());
// Fill mandatory columns
for (int i = 0; i < size(); ++i) {
col_eid(i) = m_events[i].m_event_id;
col_time(i) = m_events[i].time().convert(m_gti.reference());
col_ra(i) = m_events[i].dir().dir().ra_deg();
col_dec(i) = m_events[i].dir().dir().dec_deg();
col_energy(i) = m_events[i].energy().TeV();
}
// Append mandatory columns to table
hdu.append(col_eid);
hdu.append(col_time);
hdu.append(col_ra);
hdu.append(col_dec);
hdu.append(col_energy);
// If available, add detector coordinates in degrees
if (m_has_detxy) {
GFitsTableFloatCol col_detx = GFitsTableFloatCol("DETX", size());
GFitsTableFloatCol col_dety = GFitsTableFloatCol("DETY", size());
for (int i = 0; i < size(); ++i) {
col_detx(i) = m_events[i].dir().detx() * gammalib::rad2deg;
col_dety(i) = m_events[i].dir().dety() * gammalib::rad2deg;
}
hdu.append(col_detx);
hdu.append(col_dety);
}
// If available, add event phase
if (m_has_phase) {
GFitsTableFloatCol col_phase = GFitsTableFloatCol("PHASE", size());
for (int i = 0; i < size(); ++i) {
col_phase(i) = m_events[i].m_phase;
}
hdu.append(col_phase);
}
// Append other columns to table
for (int i = 0; i < m_columns.size(); ++i) {
hdu.append(*m_columns[i]);
}
} // endif: there were events to write
// Return
return;
}
/***********************************************************************//**
* @brief Write data selection keywords into FITS HDU
*
* @param[in] hdu FITS HDU.
*
* This method does nothing if the HDU pointer is NULL.
*
* @todo This is a very dumb data selection keyword writing routine that does
* not take into account any existing keywords. We definitely want a
* more secure logic that checks for existing keywords and possible
* conflicts. But for the moment, this code does the job.
***************************************************************************/
void GCTAEventList::write_ds_keys(GFitsHDU& hdu) const
{
// Set ROI parameters
double ra = roi().centre().dir().ra_deg();
double dec = roi().centre().dir().dec_deg();
double rad = roi().radius();
// Set energy range parameters
double e_min = emin().TeV();
double e_max = emax().TeV();
// Set energy selection string
std::string dsval2 = gammalib::str(e_min) + ":" +
gammalib::str(e_max);
// Add time selection keywords
hdu.card("DSTYP1", "TIME", "Data selection type");
hdu.card("DSUNI1", "s", "Data selection unit");
hdu.card("DSVAL1", "TABLE", "Data selection value");
hdu.card("DSREF1", ":GTI", "Data selection reference");
// Add energy range selection
hdu.card("DSTYP2", "ENERGY", "Data selection type");
hdu.card("DSUNI2", "TeV", "Data selection unit");
hdu.card("DSVAL2", dsval2, "Data selection value");
// Initialise number of NDSKEYS
int ndskeys = 2;
// Add acceptance cone only if RoI information is valid
if (m_roi.is_valid()) {
// Set cone selection string
std::string dsval3 = "CIRCLE(" +
gammalib::str(ra) + "," +
gammalib::str(dec) + "," +
gammalib::str(rad) + ")";
// Write DS keywords
hdu.card("DSTYP3", "POS(RA,DEC)", "Data selection type");
hdu.card("DSUNI3", "deg", "Data selection unit");
hdu.card("DSVAL3", dsval3, "Data selection value");
ndskeys++;
} // endif: RoI was valid
// Set number of data selection keys
hdu.card("NDSKEYS", ndskeys, "Number of data selections");
// Return
return;
}
/***********************************************************************//**
* @brief Initialize IRF cache for a given model
*
* @param[in] name Model name.
* @return Cache index (-1 if invalid).
***************************************************************************/
int GCTAEventList::irf_cache_init(const std::string& name) const
{
// Initialise cache index
int index = irf_cache_index(name);
// Continue only if model does not yet exist
if (index == -1) {
// Add model name and vector to cache. The vector is initialized
// to -1, which signals that no cache values exist
m_irf_names.push_back(name);
m_irf_values.push_back(std::vector<double>(size(), -1.0));
// Set index
index = m_irf_names.size()-1;
} // endif: model cache did not yet exist
// Return index
return index;
}
/***********************************************************************//**
* @brief Determines the cache index for a given model name
*
* @param[in] name Model name.
* @return Cache index (-1 if model has not been found).
***************************************************************************/
int GCTAEventList::irf_cache_index(const std::string& name) const
{
// Initialise index
int index = -1;
// Continue only if there are models in cache
if (!m_irf_names.empty()) {
// Search for model name
for (int i = 0; i < m_irf_names.size(); ++i) {
if (m_irf_names[i] == name) {
index = i;
break;
}
}
} // endif: there were models in cache
// Return index
return index;
}
/***********************************************************************//**
* @brief Get cache IRF value
*
* @param[in] name Model name.
* @param[in] index Event index [0,...,size()-1].
* @return IRF value (-1 if no cache value found).
***************************************************************************/
double GCTAEventList::irf_cache(const std::string& name, const int& index) const
{
// Initialise IRF value to invalid value
double irf = -1.0;
// Get cache index. Continue only if index is valid
int icache = irf_cache_index(name);
if (icache != -1) {
irf = (m_irf_values[icache])[index];
}
// Return IRF value
return irf;
}
/***********************************************************************//**
* @brief Set cache IRF value
*
* @param[in] name Model name.
* @param[in] index Event index [0,...,size()-1].
* @param[in] irf IRF value.
***************************************************************************/
void GCTAEventList::irf_cache(const std::string& name, const int& index,
const double& irf) const
{
// Initialize cache index. Continue only if index is valid
int icache = irf_cache_init(name);
if (icache != -1) {
(m_irf_values[icache])[index] = irf;
}
// Return
return;
}