Commit 35b1bdd346b05fec163c959cb8cc27985adb4c74
1 parent
d7f7af88
Add base class unit test to enhance coverage (#1828)
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668 additions
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225 deletions
pyext/ctlikelihood.i
| @@ -26,9 +26,44 @@ | @@ -26,9 +26,44 @@ | ||
| 26 | 26 | ||
| 27 | %{ | 27 | %{ |
| 28 | /* Put headers and other declarations here that are needed for compilation */ | 28 | /* Put headers and other declarations here that are needed for compilation */ |
| 29 | +#define SWIG | ||
| 29 | #include "ctlikelihood.hpp" | 30 | #include "ctlikelihood.hpp" |
| 31 | + | ||
| 32 | + | ||
| 33 | +/***********************************************************************//** | ||
| 34 | + * @class cslikelihood | ||
| 35 | + * | ||
| 36 | + * @brief cslikelihood base class | ||
| 37 | + * | ||
| 38 | + * This class is a non-abstract C++ implementation of the ctlikelihood base | ||
| 39 | + * class. It serves as Python base class since Python does not know about | ||
| 40 | + * abstract classes. | ||
| 41 | + ***************************************************************************/ | ||
| 42 | +class cslikelihood : public ctlikelihood { | ||
| 43 | +public: | ||
| 44 | + // Constructors and destructors | ||
| 45 | + cslikelihood(const std::string& name, const std::string& version) : | ||
| 46 | + ctlikelihood(name, version) {} | ||
| 47 | + cslikelihood(const std::string& name, const std::string& version, | ||
| 48 | + const GObservations& obs) : | ||
| 49 | + ctlikelihood(name, version, obs) {} | ||
| 50 | + cslikelihood(const std::string& name, const std::string& version, | ||
| 51 | + int argc, char* argv[]) : | ||
| 52 | + ctlikelihood(name, version, argc, argv){} | ||
| 53 | + cslikelihood(const cslikelihood& app) : ctlikelihood(app) {} | ||
| 54 | + virtual ~cslikelihood(void) {} | ||
| 55 | + | ||
| 56 | + // Dummy methods (implementation makes this class non-abstract) | ||
| 57 | + virtual void clear(void) {} | ||
| 58 | + virtual void run(void) {} | ||
| 59 | + virtual void save(void) {} | ||
| 60 | +}; | ||
| 30 | %} | 61 | %} |
| 31 | 62 | ||
| 63 | +// Include (int ARGC, char **ARGV) typemap to allow passing command line | ||
| 64 | +// arguments to GApplication constructor | ||
| 65 | +%include "argcargv.i" | ||
| 66 | + | ||
| 32 | 67 | ||
| 33 | /***********************************************************************//** | 68 | /***********************************************************************//** |
| 34 | * @class ctlikelihood | 69 | * @class ctlikelihood |
| @@ -54,11 +89,65 @@ public: | @@ -54,11 +89,65 @@ public: | ||
| 54 | 89 | ||
| 55 | // Methods | 90 | // Methods |
| 56 | const GOptimizer* opt(void) const; | 91 | const GOptimizer* opt(void) const; |
| 92 | + | ||
| 93 | + // Make methods private in Python by prepending an underscore | ||
| 94 | + %rename(_evaluate) evaluate; | ||
| 95 | + | ||
| 96 | + // Protected methods | ||
| 97 | + double evaluate(GModelPar& par, const double& value); | ||
| 98 | +}; | ||
| 99 | + | ||
| 100 | + | ||
| 101 | +/***********************************************************************//** | ||
| 102 | + * @class cslikelihood | ||
| 103 | + * | ||
| 104 | + * @brief Base class for likelihood scripts | ||
| 105 | + * | ||
| 106 | + * This is the base class from which likelihood scripts should derive. | ||
| 107 | + ***************************************************************************/ | ||
| 108 | +class cslikelihood : public ctlikelihood { | ||
| 109 | +public: | ||
| 110 | + // Constructors and destructors | ||
| 111 | + cslikelihood(const std::string& name, const std::string& version); | ||
| 112 | + cslikelihood(const std::string& name, const std::string& version, | ||
| 113 | + const GObservations& obs); | ||
| 114 | + cslikelihood(const std::string& name, const std::string& version, | ||
| 115 | + int ARGC, char **ARGV); | ||
| 116 | + cslikelihood(const cslikelihood& app); | ||
| 117 | + virtual ~cslikelihood(void); | ||
| 118 | + | ||
| 119 | + // Methods | ||
| 120 | + virtual void clear(void); | ||
| 121 | + virtual void run(void); | ||
| 122 | + virtual void save(void); | ||
| 57 | }; | 123 | }; |
| 58 | 124 | ||
| 59 | 125 | ||
| 60 | /***********************************************************************//** | 126 | /***********************************************************************//** |
| 61 | - * @brief Likelihood tool Python extensions | 127 | + * @brief Likelihood tool base class C++ extensions |
| 62 | ***************************************************************************/ | 128 | ***************************************************************************/ |
| 63 | %extend ctlikelihood { | 129 | %extend ctlikelihood { |
| 64 | } | 130 | } |
| 131 | + | ||
| 132 | + | ||
| 133 | +/***********************************************************************//** | ||
| 134 | + * @brief Likelihood tool base class Python extensions | ||
| 135 | + ***************************************************************************/ | ||
| 136 | +%pythoncode %{ | ||
| 137 | + | ||
| 138 | +# Initialise application by calling the appropriate base class constructor. | ||
| 139 | +# The function supports either an observation container, or an argument | ||
| 140 | +# list or no argument as "argv" parameter. The function also writes the | ||
| 141 | +# header in the log file and switches the date on for logging. | ||
| 142 | +def _init_cslikelihood(self, argv): | ||
| 143 | + if len(argv) > 0 and isinstance(argv[0],gammalib.GObservations): | ||
| 144 | + cslikelihood.__init__(self, self._name, self._version, argv[0]) | ||
| 145 | + elif len(argv) > 0: | ||
| 146 | + cslikelihood.__init__(self, self._name, self._version, *argv) | ||
| 147 | + else: | ||
| 148 | + cslikelihood.__init__(self, self._name, self._version) | ||
| 149 | + # Set logger properties | ||
| 150 | + self._log_header() | ||
| 151 | + self._log.date(True) | ||
| 152 | +cslikelihood._init_cslikelihood = _init_cslikelihood | ||
| 153 | +%} |
pyext/ctobservation.i
| @@ -26,14 +26,49 @@ | @@ -26,14 +26,49 @@ | ||
| 26 | 26 | ||
| 27 | %{ | 27 | %{ |
| 28 | /* Put headers and other declarations here that are needed for compilation */ | 28 | /* Put headers and other declarations here that are needed for compilation */ |
| 29 | +#define SWIG | ||
| 29 | #include "ctobservation.hpp" | 30 | #include "ctobservation.hpp" |
| 31 | + | ||
| 32 | + | ||
| 33 | +/***********************************************************************//** | ||
| 34 | + * @class csobservation | ||
| 35 | + * | ||
| 36 | + * @brief csobservation base class | ||
| 37 | + * | ||
| 38 | + * This class is a non-abstract C++ implementation of the ctobservation base | ||
| 39 | + * class. It serves as Python base class since Python does not know about | ||
| 40 | + * abstract classes. | ||
| 41 | + ***************************************************************************/ | ||
| 42 | +class csobservation : public ctobservation { | ||
| 43 | +public: | ||
| 44 | + // Constructors and destructors | ||
| 45 | + csobservation(const std::string& name, const std::string& version) : | ||
| 46 | + ctobservation(name, version) {} | ||
| 47 | + csobservation(const std::string& name, const std::string& version, | ||
| 48 | + const GObservations& obs) : | ||
| 49 | + ctobservation(name, version, obs) {} | ||
| 50 | + csobservation(const std::string& name, const std::string& version, | ||
| 51 | + int argc, char* argv[]) : | ||
| 52 | + ctobservation(name, version, argc, argv){} | ||
| 53 | + csobservation(const csobservation& app) : ctobservation(app) {} | ||
| 54 | + virtual ~csobservation(void) {} | ||
| 55 | + | ||
| 56 | + // Dummy methods (implementation makes this class non-abstract) | ||
| 57 | + virtual void clear(void) {} | ||
| 58 | + virtual void run(void) {} | ||
| 59 | + virtual void save(void) {} | ||
| 60 | +}; | ||
| 30 | %} | 61 | %} |
| 31 | 62 | ||
| 63 | +// Include (int ARGC, char **ARGV) typemap to allow passing command line | ||
| 64 | +// arguments to GApplication constructor | ||
| 65 | +%include "argcargv.i" | ||
| 66 | + | ||
| 32 | 67 | ||
| 33 | /***********************************************************************//** | 68 | /***********************************************************************//** |
| 34 | * @class ctobservation | 69 | * @class ctobservation |
| 35 | * | 70 | * |
| 36 | - * @brief Base class for likelihood tools | 71 | + * @brief Base class for observation tools |
| 37 | ***************************************************************************/ | 72 | ***************************************************************************/ |
| 38 | class ctobservation : public ctool { | 73 | class ctobservation : public ctool { |
| 39 | 74 | ||
| @@ -43,7 +78,7 @@ public: | @@ -43,7 +78,7 @@ public: | ||
| 43 | ctobservation(const std::string& name, const std::string& version, | 78 | ctobservation(const std::string& name, const std::string& version, |
| 44 | const GObservations& obs); | 79 | const GObservations& obs); |
| 45 | ctobservation(const std::string& name, const std::string& version, | 80 | ctobservation(const std::string& name, const std::string& version, |
| 46 | - int argc, char* argv[]); | 81 | + int ARGC, char **ARGV); |
| 47 | ctobservation(const ctobservation& app); | 82 | ctobservation(const ctobservation& app); |
| 48 | virtual ~ctobservation(void); | 83 | virtual ~ctobservation(void); |
| 49 | 84 | ||
| @@ -66,6 +101,31 @@ public: | @@ -66,6 +101,31 @@ public: | ||
| 66 | 101 | ||
| 67 | 102 | ||
| 68 | /***********************************************************************//** | 103 | /***********************************************************************//** |
| 104 | + * @class csobservation | ||
| 105 | + * | ||
| 106 | + * @brief Base class for observation scripts | ||
| 107 | + * | ||
| 108 | + * This is the base class from which observation scripts should derive. | ||
| 109 | + ***************************************************************************/ | ||
| 110 | +class csobservation : public ctobservation { | ||
| 111 | +public: | ||
| 112 | + // Constructors and destructors | ||
| 113 | + csobservation(const std::string& name, const std::string& version); | ||
| 114 | + csobservation(const std::string& name, const std::string& version, | ||
| 115 | + const GObservations& obs); | ||
| 116 | + csobservation(const std::string& name, const std::string& version, | ||
| 117 | + int ARGC, char **ARGV); | ||
| 118 | + csobservation(const csobservation& app); | ||
| 119 | + virtual ~csobservation(void); | ||
| 120 | + | ||
| 121 | + // Methods | ||
| 122 | + virtual void clear(void); | ||
| 123 | + virtual void run(void); | ||
| 124 | + virtual void save(void); | ||
| 125 | +}; | ||
| 126 | + | ||
| 127 | + | ||
| 128 | +/***********************************************************************//** | ||
| 69 | * @brief Observation tool base class C++ extensions | 129 | * @brief Observation tool base class C++ extensions |
| 70 | ***************************************************************************/ | 130 | ***************************************************************************/ |
| 71 | %extend ctobservation { | 131 | %extend ctobservation { |
| @@ -76,6 +136,24 @@ public: | @@ -76,6 +136,24 @@ public: | ||
| 76 | * @brief Observation tool base class Python extensions | 136 | * @brief Observation tool base class Python extensions |
| 77 | ***************************************************************************/ | 137 | ***************************************************************************/ |
| 78 | %pythoncode %{ | 138 | %pythoncode %{ |
| 139 | + | ||
| 140 | +# Initialise application by calling the appropriate base class constructor. | ||
| 141 | +# The function supports either an observation container, or an argument | ||
| 142 | +# list or no argument as "argv" parameter. The function also writes the | ||
| 143 | +# header in the log file and switches the date on for logging. | ||
| 144 | +def _init_csobservation(self, argv): | ||
| 145 | + if len(argv) > 0 and isinstance(argv[0],gammalib.GObservations): | ||
| 146 | + csobservation.__init__(self, self._name, self._version, argv[0]) | ||
| 147 | + elif len(argv) > 0: | ||
| 148 | + csobservation.__init__(self, self._name, self._version, *argv) | ||
| 149 | + else: | ||
| 150 | + csobservation.__init__(self, self._name, self._version) | ||
| 151 | + # Set logger properties | ||
| 152 | + self._log_header() | ||
| 153 | + self._log.date(True) | ||
| 154 | +csobservation._init_csobservation = _init_csobservation | ||
| 155 | + | ||
| 156 | +# Define an iterator over all observations | ||
| 79 | def _unbinned_observations(self): | 157 | def _unbinned_observations(self): |
| 80 | obs = self._first_unbinned_observation() | 158 | obs = self._first_unbinned_observation() |
| 81 | while obs != None: | 159 | while obs != None: |
pyext/ctool.i
| @@ -86,12 +86,12 @@ public: | @@ -86,12 +86,12 @@ public: | ||
| 86 | %rename(_time_reference) time_reference; | 86 | %rename(_time_reference) time_reference; |
| 87 | %rename(_get_observations) get_observations; | 87 | %rename(_get_observations) get_observations; |
| 88 | %rename(_setup_observations) setup_observations; | 88 | %rename(_setup_observations) setup_observations; |
| 89 | + %rename(_setup_models) setup_models; | ||
| 89 | %rename(_create_ebounds) create_ebounds; | 90 | %rename(_create_ebounds) create_ebounds; |
| 90 | %rename(_create_map) create_map; | 91 | %rename(_create_map) create_map; |
| 91 | %rename(_create_cube) create_cube; | 92 | %rename(_create_cube) create_cube; |
| 92 | %rename(_create_cta_obs) create_cta_obs; | 93 | %rename(_create_cta_obs) create_cta_obs; |
| 93 | %rename(_require_inobs) require_inobs; | 94 | %rename(_require_inobs) require_inobs; |
| 94 | - %rename(_require_inobs_nolist) require_inobs_nolist; | ||
| 95 | %rename(_require_inobs_nocube) require_inobs_nocube; | 95 | %rename(_require_inobs_nocube) require_inobs_nocube; |
| 96 | %rename(_log_observations) log_observations; | 96 | %rename(_log_observations) log_observations; |
| 97 | %rename(_log_models) log_models; | 97 | %rename(_log_models) log_models; |
| @@ -128,9 +128,11 @@ public: | @@ -128,9 +128,11 @@ public: | ||
| 128 | 128 | ||
| 129 | // Protected methods that check user parameters | 129 | // Protected methods that check user parameters |
| 130 | void require_inobs(const std::string& method); | 130 | void require_inobs(const std::string& method); |
| 131 | - void require_inobs_nolist(const std::string& method); | ||
| 132 | void require_inobs_nocube(const std::string& method); | 131 | void require_inobs_nocube(const std::string& method); |
| 133 | 132 | ||
| 133 | + // Protected methods that extract user parameters | ||
| 134 | + GCTARoi get_roi(void); | ||
| 135 | + | ||
| 134 | // Protected methods for logging | 136 | // Protected methods for logging |
| 135 | void log_observations(const GChatter& chatter, | 137 | void log_observations(const GChatter& chatter, |
| 136 | const GObservations& obs, | 138 | const GObservations& obs, |
| @@ -139,9 +141,6 @@ public: | @@ -139,9 +141,6 @@ public: | ||
| 139 | const GModels& models, | 141 | const GModels& models, |
| 140 | const std::string& what = "Model"); | 142 | const std::string& what = "Model"); |
| 141 | 143 | ||
| 142 | - // Protected methods that extract user parameters | ||
| 143 | - GCTARoi get_roi(void); | ||
| 144 | - | ||
| 145 | // Protected support methods | 144 | // Protected support methods |
| 146 | void set_response(GObservations& obs); | 145 | void set_response(GObservations& obs); |
| 147 | std::vector<bool> set_edisp(GObservations& obs, const bool& edisp) const; | 146 | std::vector<bool> set_edisp(GObservations& obs, const bool& edisp) const; |
src/ctulimit/ctulimit.par
| @@ -38,7 +38,7 @@ eref, r, h, 1.0,,, "Reference energy for differential limit (TeV)" | @@ -38,7 +38,7 @@ eref, r, h, 1.0,,, "Reference energy for differential limit (TeV)" | ||
| 38 | emin, r, h, 1.0,,, "Minimum energy for integral flux limit (TeV)" | 38 | emin, r, h, 1.0,,, "Minimum energy for integral flux limit (TeV)" |
| 39 | emax, r, h, 100.0,,, "Maximum energy for integral flux limit (TeV)" | 39 | emax, r, h, 100.0,,, "Maximum energy for integral flux limit (TeV)" |
| 40 | tol, r, h, 1e-5,,, "Computation tolerance" | 40 | tol, r, h, 1e-5,,, "Computation tolerance" |
| 41 | -max_iter, i, h, 50,,, "Maximum number of iterations" | 41 | +max_iter, i, h, 50,1,1000, "Maximum number of iterations" |
| 42 | 42 | ||
| 43 | # | 43 | # |
| 44 | # Standard parameters | 44 | # Standard parameters |
src/support/ctlikelihood.hpp
| @@ -61,15 +61,20 @@ public: | @@ -61,15 +61,20 @@ public: | ||
| 61 | // Methods | 61 | // Methods |
| 62 | const GOptimizer* opt(void) const; | 62 | const GOptimizer* opt(void) const; |
| 63 | 63 | ||
| 64 | +#ifndef SWIG | ||
| 65 | +protected: | ||
| 66 | +#endif | ||
| 67 | + // Protected methods in C++, public in SWIG interface | ||
| 68 | + double evaluate(GModelPar& par, const double& value); | ||
| 69 | + | ||
| 64 | protected: | 70 | protected: |
| 65 | // Protected methods | 71 | // Protected methods |
| 66 | void init_members(void); | 72 | void init_members(void); |
| 67 | void copy_members(const ctlikelihood& app); | 73 | void copy_members(const ctlikelihood& app); |
| 68 | void free_members(void); | 74 | void free_members(void); |
| 69 | - double evaluate(GModelPar& par, const double& value); | ||
| 70 | 75 | ||
| 71 | // Protected members | 76 | // Protected members |
| 72 | - GOptimizerLM m_opt; //!< Optimizer | 77 | + GOptimizerLM m_opt; //!< Optimizer |
| 73 | }; | 78 | }; |
| 74 | 79 | ||
| 75 | 80 |
src/support/ctobservation.hpp
| @@ -64,9 +64,7 @@ public: | @@ -64,9 +64,7 @@ public: | ||
| 64 | // Methods | 64 | // Methods |
| 65 | const GObservations& obs(void) const; | 65 | const GObservations& obs(void) const; |
| 66 | 66 | ||
| 67 | -#ifdef SWIG | ||
| 68 | -public: | ||
| 69 | -#else | 67 | +#ifndef SWIG |
| 70 | protected: | 68 | protected: |
| 71 | #endif | 69 | #endif |
| 72 | // Iterator methods and members | 70 | // Iterator methods and members |
src/support/ctool.cpp
| @@ -549,10 +549,10 @@ GEbounds ctool::create_ebounds(void) | @@ -549,10 +549,10 @@ GEbounds ctool::create_ebounds(void) | ||
| 549 | file.close(); | 549 | file.close(); |
| 550 | std::string msg = "No extension with name \"EBOUNDS\" or" | 550 | std::string msg = "No extension with name \"EBOUNDS\" or" |
| 551 | " \"ENERGYBINS\" found in FITS file" | 551 | " \"ENERGYBINS\" found in FITS file" |
| 552 | - " \""+ebinfile+"\".\n" | ||
| 553 | - "An \"EBOUNDS\" or \"ENERGYBINS\" extension" | ||
| 554 | - " is required if the parameter \"ebinalg\"" | ||
| 555 | - " is set to \"FILE\"."; | 552 | + " \""+ebinfile+"\". An \"EBOUNDS\" or " |
| 553 | + "\"ENERGYBINS\" extension is required if " | ||
| 554 | + "the parameter \"ebinalg\" is set to " | ||
| 555 | + "\"FILE\"."; | ||
| 556 | throw GException::invalid_value(G_CREATE_EBOUNDS, msg); | 556 | throw GException::invalid_value(G_CREATE_EBOUNDS, msg); |
| 557 | } | 557 | } |
| 558 | } | 558 | } |
| @@ -788,6 +788,9 @@ GCTAObservation ctool::create_cta_obs(void) | @@ -788,6 +788,9 @@ GCTAObservation ctool::create_cta_obs(void) | ||
| 788 | * | 788 | * |
| 789 | * Throw an exception if the "inobs" parameter is either "NONE" or an empty | 789 | * Throw an exception if the "inobs" parameter is either "NONE" or an empty |
| 790 | * string. | 790 | * string. |
| 791 | + * | ||
| 792 | + * @todo This method is only used by csobsinfo, csresmap and csspec. We | ||
| 793 | + * should try to get rid of it | ||
| 791 | ***************************************************************************/ | 794 | ***************************************************************************/ |
| 792 | void ctool::require_inobs(const std::string& method) | 795 | void ctool::require_inobs(const std::string& method) |
| 793 | { | 796 | { |
| @@ -810,63 +813,13 @@ void ctool::require_inobs(const std::string& method) | @@ -810,63 +813,13 @@ void ctool::require_inobs(const std::string& method) | ||
| 810 | 813 | ||
| 811 | 814 | ||
| 812 | /***********************************************************************//** | 815 | /***********************************************************************//** |
| 813 | - * @brief Throws exception if inobs parameter is an event list | ||
| 814 | - * | ||
| 815 | - * @param[in] method Method name. | ||
| 816 | - * | ||
| 817 | - * Throw an exception if the inobs parameter is an event list. | ||
| 818 | - ***************************************************************************/ | ||
| 819 | -void ctool::require_inobs_nolist(const std::string& method) | ||
| 820 | -{ | ||
| 821 | - // Get inobs filename | ||
| 822 | - GFilename filename = (*this)["inobs"].filename(); | ||
| 823 | - | ||
| 824 | - // Continue only if we have a FITS file | ||
| 825 | - if (filename.is_fits()) { | ||
| 826 | - | ||
| 827 | - // Signal no list | ||
| 828 | - bool is_list = false; | ||
| 829 | - | ||
| 830 | - // Try loading file as counts cube. If this is successful then | ||
| 831 | - // throw an exception | ||
| 832 | - try { | ||
| 833 | - | ||
| 834 | - // Load list from file | ||
| 835 | - GCTAEventList list(filename); | ||
| 836 | - | ||
| 837 | - // If we're still alive then signal that we have a list | ||
| 838 | - is_list = true; | ||
| 839 | - | ||
| 840 | - } | ||
| 841 | - | ||
| 842 | - // Catch any exceptions | ||
| 843 | - catch (...) { | ||
| 844 | - ; | ||
| 845 | - } | ||
| 846 | - | ||
| 847 | - // If we have an event list then throw an exception | ||
| 848 | - if (is_list) { | ||
| 849 | - std::string msg = "An event list has been specified for the " | ||
| 850 | - "\"inobs\" parameter, yet no event list " | ||
| 851 | - "can be specified as input observation." | ||
| 852 | - " Instead, specify a counts cube or an " | ||
| 853 | - "observation definition file."; | ||
| 854 | - throw GException::invalid_value(method, msg); | ||
| 855 | - } | ||
| 856 | - | ||
| 857 | - } // endif: we had a FITS file | ||
| 858 | - | ||
| 859 | - // Return | ||
| 860 | - return; | ||
| 861 | -} | ||
| 862 | - | ||
| 863 | - | ||
| 864 | -/***********************************************************************//** | ||
| 865 | * @brief Throws exception if inobs parameter is a counts cube | 816 | * @brief Throws exception if inobs parameter is a counts cube |
| 866 | * | 817 | * |
| 867 | * @param[in] method Method name. | 818 | * @param[in] method Method name. |
| 868 | * | 819 | * |
| 869 | * Throw an exception if the inobs parameter is a counts cube. | 820 | * Throw an exception if the inobs parameter is a counts cube. |
| 821 | + * | ||
| 822 | + * @todo This method is only used by ctobssim. We should try to get rid of it | ||
| 870 | ***************************************************************************/ | 823 | ***************************************************************************/ |
| 871 | void ctool::require_inobs_nocube(const std::string& method) | 824 | void ctool::require_inobs_nocube(const std::string& method) |
| 872 | { | 825 | { |
| @@ -1542,6 +1495,9 @@ GSkyDir ctool::get_mean_pointing(const GObservations& obs) | @@ -1542,6 +1495,9 @@ GSkyDir ctool::get_mean_pointing(const GObservations& obs) | ||
| 1542 | * @brief Get current resident set size (physical memory use) in Bytes | 1495 | * @brief Get current resident set size (physical memory use) in Bytes |
| 1543 | * | 1496 | * |
| 1544 | * @return Physical memory use in Bytes. | 1497 | * @return Physical memory use in Bytes. |
| 1498 | + * | ||
| 1499 | + * @todo This method is currently not used and can be removed if we do not | ||
| 1500 | + * use it | ||
| 1545 | ***************************************************************************/ | 1501 | ***************************************************************************/ |
| 1546 | size_t ctool::get_current_rss(void) | 1502 | size_t ctool::get_current_rss(void) |
| 1547 | { | 1503 | { |
test/test_cscript.py
0 → 100755
| 1 | +#! /usr/bin/env python | ||
| 2 | +# ========================================================================== | ||
| 3 | +# This scripts performs unit tests for the cspull script. | ||
| 4 | +# | ||
| 5 | +# Copyright (C) 2016 Juergen Knoedlseder | ||
| 6 | +# | ||
| 7 | +# This program is free software: you can redistribute it and/or modify | ||
| 8 | +# it under the terms of the GNU General Public License as published by | ||
| 9 | +# the Free Software Foundation, either version 3 of the License, or | ||
| 10 | +# (at your option) any later version. | ||
| 11 | +# | ||
| 12 | +# This program is distributed in the hope that it will be useful, | ||
| 13 | +# but WITHOUT ANY WARRANTY; without even the implied warranty of | ||
| 14 | +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the | ||
| 15 | +# GNU General Public License for more details. | ||
| 16 | +# | ||
| 17 | +# You should have received a copy of the GNU General Public License | ||
| 18 | +# along with this program. If not, see <http://www.gnu.org/licenses/>. | ||
| 19 | +# | ||
| 20 | +# ========================================================================== | ||
| 21 | +import gammalib | ||
| 22 | +import ctools | ||
| 23 | +from testing import test | ||
| 24 | + | ||
| 25 | + | ||
| 26 | +# ================== # | ||
| 27 | +# cscript_test class # | ||
| 28 | +# ================== # | ||
| 29 | +class cscript_test(ctools.cscript): | ||
| 30 | + """ | ||
| 31 | + Test class for the cscript base class | ||
| 32 | + """ | ||
| 33 | + # Constructor | ||
| 34 | + def __init__(self, *argv): | ||
| 35 | + """ | ||
| 36 | + Constructor | ||
| 37 | + """ | ||
| 38 | + # Set name | ||
| 39 | + self._name = 'cscript_test' | ||
| 40 | + self._version = '1.2.0' | ||
| 41 | + | ||
| 42 | + # Initialise observation container from constructor arguments | ||
| 43 | + self._obs, argv = self._set_input_obs(argv) | ||
| 44 | + | ||
| 45 | + # Initialise application by calling the appropriate class constructor | ||
| 46 | + self._init_cscript(argv) | ||
| 47 | + | ||
| 48 | + # Return | ||
| 49 | + return | ||
| 50 | + | ||
| 51 | + # Check is_valid_filename() method | ||
| 52 | + def _check_is_valid_filename(self, filename): | ||
| 53 | + return self._is_valid_filename(gammalib.GFilename(filename)) | ||
| 54 | + | ||
| 55 | + # Check setup_observations() method | ||
| 56 | + def _check_setup_observations(self, filename, list=True, cube=True): | ||
| 57 | + self.pars()['inobs'].value(filename) | ||
| 58 | + obs = gammalib.GObservations() | ||
| 59 | + self._setup_observations(obs, True, list, cube) | ||
| 60 | + return | ||
| 61 | + | ||
| 62 | + # Check setup_models() method | ||
| 63 | + def _check_setup_models(self): | ||
| 64 | + obs = gammalib.GObservations() | ||
| 65 | + self._setup_models(obs) | ||
| 66 | + return | ||
| 67 | + | ||
| 68 | + # Check create_ebounds() method | ||
| 69 | + def _check_create_ebounds(self, filename): | ||
| 70 | + self.pars()['ebinfile'].value(filename) | ||
| 71 | + return self._create_ebounds() | ||
| 72 | + | ||
| 73 | + # Check require_inobs() method | ||
| 74 | + def _check_require_inobs(self, filename): | ||
| 75 | + self.pars()['inobs'].value(filename) | ||
| 76 | + self._require_inobs('_check_require_inobs') | ||
| 77 | + return | ||
| 78 | + | ||
| 79 | + # Check get_roi() method | ||
| 80 | + def _check_get_roi(self): | ||
| 81 | + return self._get_roi() | ||
| 82 | + | ||
| 83 | + # Check restore_edisp() method | ||
| 84 | + def _check_restore_edisp(self): | ||
| 85 | + obs = gammalib.GObservations() | ||
| 86 | + edisp = [True, True] | ||
| 87 | + self._restore_edisp(obs, edisp) | ||
| 88 | + return | ||
| 89 | + | ||
| 90 | + # Check set_obs_bounds() method | ||
| 91 | + def _check_set_obs_bounds(self): | ||
| 92 | + obs = gammalib.GObservations() | ||
| 93 | + list = gammalib.GCTAEventList() | ||
| 94 | + cta = gammalib.GCTAObservation() | ||
| 95 | + cta.events(list) | ||
| 96 | + obs.append(cta) | ||
| 97 | + self._set_obs_bounds(obs) | ||
| 98 | + return obs.copy() | ||
| 99 | + | ||
| 100 | + # Check get_mean_pointing() method | ||
| 101 | + def _check_get_mean_pointing(self): | ||
| 102 | + obs = gammalib.GObservations() | ||
| 103 | + return self._get_mean_pointing(obs) | ||
| 104 | + | ||
| 105 | + | ||
| 106 | +# ======================== # | ||
| 107 | +# ctobservation_test class # | ||
| 108 | +# ======================== # | ||
| 109 | +class ctobservation_test(ctools.csobservation): | ||
| 110 | + """ | ||
| 111 | + Test class for the ctobservation base class | ||
| 112 | + """ | ||
| 113 | + # Constructor | ||
| 114 | + def __init__(self, *argv): | ||
| 115 | + """ | ||
| 116 | + Constructor | ||
| 117 | + """ | ||
| 118 | + # Set name | ||
| 119 | + self._name = 'ctobservation_test' | ||
| 120 | + self._version = '1.2.0' | ||
| 121 | + | ||
| 122 | + # Initialise application by calling the appropriate class constructor | ||
| 123 | + self._init_csobservation(argv) | ||
| 124 | + | ||
| 125 | + # Return | ||
| 126 | + return | ||
| 127 | + | ||
| 128 | + | ||
| 129 | +# ======================= # | ||
| 130 | +# ctlikelihood_test class # | ||
| 131 | +# ======================= # | ||
| 132 | +class ctlikelihood_test(ctools.cslikelihood): | ||
| 133 | + """ | ||
| 134 | + Test class for the ctlikelihood base class | ||
| 135 | + """ | ||
| 136 | + # Constructor | ||
| 137 | + def __init__(self, *argv): | ||
| 138 | + """ | ||
| 139 | + Constructor | ||
| 140 | + """ | ||
| 141 | + # Set name | ||
| 142 | + self._name = 'ctlikelihood_test' | ||
| 143 | + self._version = '1.2.0' | ||
| 144 | + | ||
| 145 | + # Initialise application by calling the appropriate class constructor | ||
| 146 | + self._init_cslikelihood(argv) | ||
| 147 | + | ||
| 148 | + # Return | ||
| 149 | + return | ||
| 150 | + | ||
| 151 | + # Check evaluate() method | ||
| 152 | + def _check_evaluate(self, value): | ||
| 153 | + par = gammalib.GModelPar() | ||
| 154 | + par.value(2.0) | ||
| 155 | + par.range(1.0, 3.0) | ||
| 156 | + return self._evaluate(par, value) | ||
| 157 | + | ||
| 158 | + | ||
| 159 | +# ============================ # | ||
| 160 | +# Test class for base classes # | ||
| 161 | +# ============================ # | ||
| 162 | +class Test(test): | ||
| 163 | + """ | ||
| 164 | + Test class for base classes | ||
| 165 | + """ | ||
| 166 | + # Constructor | ||
| 167 | + def __init__(self): | ||
| 168 | + """ | ||
| 169 | + Constructor | ||
| 170 | + """ | ||
| 171 | + # Call base class constructor | ||
| 172 | + test.__init__(self) | ||
| 173 | + | ||
| 174 | + # Create parameter file for cscript_test application | ||
| 175 | + pars = gammalib.GApplicationPars() | ||
| 176 | + pars.append(gammalib.GApplicationPar('inobs','f','h','NONE','','','')) | ||
| 177 | + pars.append(gammalib.GApplicationPar('inmodel','f','h','NONE','','','')) | ||
| 178 | + pars.append(gammalib.GApplicationPar('ebinalg','s','h','FILE','','','')) | ||
| 179 | + pars.append(gammalib.GApplicationPar('ebinfile','f','h','NONE','','','')) | ||
| 180 | + pars.append(gammalib.GApplicationPar('ra','r','h','NONE','','','')) | ||
| 181 | + pars.append(gammalib.GApplicationPar('dec','r','h','NONE','','','')) | ||
| 182 | + pars.append(gammalib.GApplicationPar('rad','r','h','1.0','','','')) | ||
| 183 | + pars.append(gammalib.GApplicationPar('emin','r','h','1.0','','','')) | ||
| 184 | + pars.append(gammalib.GApplicationPar('emax','r','h','10.0','','','')) | ||
| 185 | + pars.append_standard() | ||
| 186 | + pars.save('cscript_test.par') | ||
| 187 | + | ||
| 188 | + # Create parameter file for ctobservation_test.par application | ||
| 189 | + pars = gammalib.GApplicationPars() | ||
| 190 | + pars.append_standard() | ||
| 191 | + pars.save('ctobservation_test.par') | ||
| 192 | + | ||
| 193 | + # Create parameter file for ctlikelihood_test application | ||
| 194 | + pars = gammalib.GApplicationPars() | ||
| 195 | + pars.append_standard() | ||
| 196 | + pars.save('ctlikelihood_test.par') | ||
| 197 | + | ||
| 198 | + # Create energy boundaries file | ||
| 199 | + ebounds = gammalib.GEbounds(1, gammalib.GEnergy(1.0,'TeV'), | ||
| 200 | + gammalib.GEnergy(10.0,'TeV')) | ||
| 201 | + ebounds.save('test_ebinfile_ebounds.fits[EBOUNDS]', True) | ||
| 202 | + ebounds.save('test_ebinfile_energybins.fits[ENERGYBINS]', True) | ||
| 203 | + ebounds.save('test_ebinfile_energies.fits[ENERGIES]', True) | ||
| 204 | + | ||
| 205 | + # Return | ||
| 206 | + return | ||
| 207 | + | ||
| 208 | + # Set test functions | ||
| 209 | + def set(self): | ||
| 210 | + """ | ||
| 211 | + Set all test functions | ||
| 212 | + """ | ||
| 213 | + # Set test name | ||
| 214 | + self.name('cscript') | ||
| 215 | + | ||
| 216 | + # Append tests | ||
| 217 | + self.append(self._test_cscript, 'Test cscript base class') | ||
| 218 | + self.append(self._test_ctobservation, 'Test ctobservation base class') | ||
| 219 | + self.append(self._test_ctlikelihood, 'Test ctlikelihood base class') | ||
| 220 | + | ||
| 221 | + # Return | ||
| 222 | + return | ||
| 223 | + | ||
| 224 | + # Test cscript base class | ||
| 225 | + def _test_cscript(self): | ||
| 226 | + """ | ||
| 227 | + Test cscript base class | ||
| 228 | + """ | ||
| 229 | + # Allocate empty | ||
| 230 | + empty = cscript_test() | ||
| 231 | + | ||
| 232 | + # Test is_valid_filename() method | ||
| 233 | + self.test_assert(empty._check_is_valid_filename(self._model), | ||
| 234 | + 'Check model definiton XML file') | ||
| 235 | + self.test_assert(not empty._check_is_valid_filename(''), | ||
| 236 | + 'Check empty filename') | ||
| 237 | + self.test_assert(not empty._check_is_valid_filename('NONE'), | ||
| 238 | + 'Check "NONE" filename') | ||
| 239 | + | ||
| 240 | + # Test setup_observations() for invalid file name | ||
| 241 | + self.test_try('Check setup_observations() for "NONE"') | ||
| 242 | + try: | ||
| 243 | + empty._check_setup_observations('NONE') | ||
| 244 | + self.test_try_failure('Exception not thrown') | ||
| 245 | + except ValueError: | ||
| 246 | + self.test_try_success() | ||
| 247 | + | ||
| 248 | + # Test setup_observations() for unacceptable event list | ||
| 249 | + self.test_try('Check setup_observations() for unacceptable event list') | ||
| 250 | + try: | ||
| 251 | + empty._check_setup_observations(self._events, list=False) | ||
| 252 | + self.test_try_failure('Exception not thrown') | ||
| 253 | + except ValueError: | ||
| 254 | + self.test_try_success() | ||
| 255 | + | ||
| 256 | + # Test setup_observations() for unacceptable counts cube | ||
| 257 | + self.test_try('Check setup_observations() for unacceptable counts cube') | ||
| 258 | + try: | ||
| 259 | + empty._check_setup_observations(self._cntcube, cube=False) | ||
| 260 | + self.test_try_failure('Exception not thrown') | ||
| 261 | + except ValueError: | ||
| 262 | + self.test_try_success() | ||
| 263 | + | ||
| 264 | + # Test setup_models() for invalid model definition file name | ||
| 265 | + self.test_try('Check setup_models() for invalid model definition file name') | ||
| 266 | + try: | ||
| 267 | + empty._check_setup_models() | ||
| 268 | + self.test_try_failure('Exception not thrown') | ||
| 269 | + except ValueError: | ||
| 270 | + self.test_try_success() | ||
| 271 | + | ||
| 272 | + # Test create_ebounds() method for "EBOUNDS" extension | ||
| 273 | + ebounds = empty._check_create_ebounds('test_ebinfile_ebounds.fits') | ||
| 274 | + self.test_value(ebounds.size(), 1, 'Check number of energy boundaries') | ||
| 275 | + self.test_value(ebounds.emin().TeV(), 1.0, 'Check minimum energy') | ||
| 276 | + self.test_value(ebounds.emax().TeV(), 10.0, 'Check maximum energy') | ||
| 277 | + | ||
| 278 | + # Test create_ebounds() method for "ENERGYBINS" extension | ||
| 279 | + ebounds = empty._check_create_ebounds('test_ebinfile_energybins.fits') | ||
| 280 | + self.test_value(ebounds.size(), 1, 'Check number of energy boundaries') | ||
| 281 | + self.test_value(ebounds.emin().TeV(), 1.0, 'Check minimum energy') | ||
| 282 | + self.test_value(ebounds.emax().TeV(), 10.0, 'Check maximum energy') | ||
| 283 | + | ||
| 284 | + # Test create_ebounds() method for invalid extension | ||
| 285 | + self.test_try('Check create_ebounds() method for invalid extension') | ||
| 286 | + try: | ||
| 287 | + empty._check_create_ebounds('test_ebinfile_energies.fits') | ||
| 288 | + self.test_try_failure('Exception not thrown') | ||
| 289 | + except ValueError: | ||
| 290 | + self.test_try_success() | ||
| 291 | + | ||
| 292 | + # Test require_inobs() method for invalid file name | ||
| 293 | + self.test_try('Check require_inobs() method for invalid file name') | ||
| 294 | + try: | ||
| 295 | + empty._check_require_inobs('NONE') | ||
| 296 | + self.test_try_failure('Exception not thrown') | ||
| 297 | + except ValueError: | ||
| 298 | + self.test_try_success() | ||
| 299 | + | ||
| 300 | + # Test get_roi() method | ||
| 301 | + roi = empty._check_get_roi() | ||
| 302 | + self.test_assert(not roi.is_valid(), 'Check get_roi() method') | ||
| 303 | + | ||
| 304 | + # Test restore_edisp() method for invalid vector size | ||
| 305 | + #self.test_try('Check restore_edisp() method for invalid vector size') | ||
| 306 | + #try: | ||
| 307 | + # empty._check_restore_edisp() | ||
| 308 | + # self.test_try_failure('Exception not thrown') | ||
| 309 | + #except ValueError: | ||
| 310 | + # self.test_try_success() | ||
| 311 | + # | ||
| 312 | + # NOTE: This code does not work because of a missing list to | ||
| 313 | + # integer vector conversion. | ||
| 314 | + | ||
| 315 | + # Test set_obs_bounds() method | ||
| 316 | + obs = empty._check_set_obs_bounds() | ||
| 317 | + self.test_value(obs.size(), 1, 'Check number of observations') | ||
| 318 | + self.test_value(obs[0].events().ebounds().size(), 1, | ||
| 319 | + 'Check number of energy boundaries') | ||
| 320 | + self.test_value(obs[0].events().ebounds().emin().TeV(), 1.0, | ||
| 321 | + 'Check minimum energy') | ||
| 322 | + self.test_value(obs[0].events().ebounds().emax().TeV(), 10.0, | ||
| 323 | + 'Check maximum energy') | ||
| 324 | + self.test_value(obs[0].events().roi().radius(), 1.0, | ||
| 325 | + 'Check RoI radius') | ||
| 326 | + | ||
| 327 | + # Test get_mean_pointing() method for empty observation container | ||
| 328 | + self.test_try('Check get_mean_pointing() method for empty observation ' | ||
| 329 | + 'container') | ||
| 330 | + try: | ||
| 331 | + empty._check_get_mean_pointing() | ||
| 332 | + self.test_try_failure('Exception not thrown') | ||
| 333 | + except ValueError: | ||
| 334 | + self.test_try_success() | ||
| 335 | + | ||
| 336 | + # Return | ||
| 337 | + return | ||
| 338 | + | ||
| 339 | + # Test ctobservation base class | ||
| 340 | + def _test_ctobservation(self): | ||
| 341 | + """ | ||
| 342 | + Test ctobservation base class | ||
| 343 | + """ | ||
| 344 | + # Allocate empty | ||
| 345 | + empty = ctobservation_test() | ||
| 346 | + | ||
| 347 | + # Test first_unbinned_observation() method | ||
| 348 | + self.test_assert(empty._first_unbinned_observation() is None, | ||
| 349 | + 'Check first_unbinned_observation() method') | ||
| 350 | + | ||
| 351 | + # Test next_unbinned_observation() method | ||
| 352 | + self.test_assert(empty._next_unbinned_observation() is None, | ||
| 353 | + 'Check next_unbinned_observation() method') | ||
| 354 | + | ||
| 355 | + # Return | ||
| 356 | + return | ||
| 357 | + | ||
| 358 | + # Test ctlikelihood base class | ||
| 359 | + def _test_ctlikelihood(self): | ||
| 360 | + """ | ||
| 361 | + Test ctlikelihood base class | ||
| 362 | + """ | ||
| 363 | + # Allocate empty | ||
| 364 | + empty = ctlikelihood_test() | ||
| 365 | + | ||
| 366 | + # Test evaluate() method for minimum value violation | ||
| 367 | + self.test_try('Check evaluate() for minimum value violation') | ||
| 368 | + try: | ||
| 369 | + empty._check_evaluate(0.0) | ||
| 370 | + self.test_try_failure('Exception not thrown') | ||
| 371 | + except ValueError: | ||
| 372 | + self.test_try_success() | ||
| 373 | + | ||
| 374 | + # Test evaluate() method for maximum value violation | ||
| 375 | + self.test_try('Check evaluate() for maximum value violation') | ||
| 376 | + try: | ||
| 377 | + empty._check_evaluate(4.0) | ||
| 378 | + self.test_try_failure('Exception not thrown') | ||
| 379 | + except ValueError: | ||
| 380 | + self.test_try_success() | ||
| 381 | + | ||
| 382 | + # Return | ||
| 383 | + return |
test/test_ctskymap.py
| @@ -181,10 +181,10 @@ class Test(test): | @@ -181,10 +181,10 @@ class Test(test): | ||
| 181 | skymap['nxpix'] = 200 | 181 | skymap['nxpix'] = 200 |
| 182 | skymap['nypix'] = 200 | 182 | skymap['nypix'] = 200 |
| 183 | skymap['binsz'] = 0.02 | 183 | skymap['binsz'] = 0.02 |
| 184 | - skymap['coordsys'] = 'CEL' | 184 | + skymap['coordsys'] = 'GAL' |
| 185 | skymap['proj'] = 'CAR' | 185 | skymap['proj'] = 'CAR' |
| 186 | - skymap['xref'] = 83.63 | ||
| 187 | - skymap['yref'] = 22.01 | 186 | + skymap['xref'] = 184.5575 |
| 187 | + skymap['yref'] = -5.7844 | ||
| 188 | skymap['outmap'] = 'ctskymap_py3.fits' | 188 | skymap['outmap'] = 'ctskymap_py3.fits' |
| 189 | skymap['logfile'] = 'ctskymap_py3.log' | 189 | skymap['logfile'] = 'ctskymap_py3.log' |
| 190 | skymap['chatter'] = 4 | 190 | skymap['chatter'] = 4 |
test/test_ctulimit.py
| @@ -111,6 +111,7 @@ class Test(test): | @@ -111,6 +111,7 @@ class Test(test): | ||
| 111 | 'Check upper limit on energy flux') | 111 | 'Check upper limit on energy flux') |
| 112 | 112 | ||
| 113 | # Check that saving does not nothing | 113 | # Check that saving does not nothing |
| 114 | + ulimit['logfile'] = 'ctulimit_py0.log' | ||
| 114 | ulimit.logFileOpen() | 115 | ulimit.logFileOpen() |
| 115 | ulimit.save() | 116 | ulimit.save() |
| 116 | 117 | ||
| @@ -157,13 +158,6 @@ class Test(test): | @@ -157,13 +158,6 @@ class Test(test): | ||
| 157 | self.test_value(cpy_ulimit.eflux_ulimit(), 2.75669e-11, 1.0e-16, | 158 | self.test_value(cpy_ulimit.eflux_ulimit(), 2.75669e-11, 1.0e-16, |
| 158 | 'Check upper limit on energy flux') | 159 | 'Check upper limit on energy flux') |
| 159 | 160 | ||
| 160 | - # Execute copy of ctulimit tool again, now with a higher chatter | ||
| 161 | - # level than before | ||
| 162 | - cpy_ulimit['logfile'] = 'ctulimit_py2.log' | ||
| 163 | - cpy_ulimit['chatter'] = 3 | ||
| 164 | - cpy_ulimit.logFileOpen() # Needed to get a new log file | ||
| 165 | - cpy_ulimit.execute() | ||
| 166 | - | ||
| 167 | # Check results | 161 | # Check results |
| 168 | self.test_value(cpy_ulimit.diff_ulimit(), 8.86803e-18, 1.0e-21, | 162 | self.test_value(cpy_ulimit.diff_ulimit(), 8.86803e-18, 1.0e-21, |
| 169 | 'Check differential upper limit') | 163 | 'Check differential upper limit') |
| @@ -172,9 +166,6 @@ class Test(test): | @@ -172,9 +166,6 @@ class Test(test): | ||
| 172 | self.test_value(cpy_ulimit.eflux_ulimit(), 2.75669e-11, 1.0e-16, | 166 | self.test_value(cpy_ulimit.eflux_ulimit(), 2.75669e-11, 1.0e-16, |
| 173 | 'Check upper limit on energy flux') | 167 | 'Check upper limit on energy flux') |
| 174 | 168 | ||
| 175 | - # Save copy of observation container for later | ||
| 176 | - obs = cpy_ulimit.obs().copy() | ||
| 177 | - | ||
| 178 | # Now clear copy of ctulimit tool | 169 | # Now clear copy of ctulimit tool |
| 179 | cpy_ulimit.clear() | 170 | cpy_ulimit.clear() |
| 180 | 171 | ||
| @@ -186,13 +177,21 @@ class Test(test): | @@ -186,13 +177,21 @@ class Test(test): | ||
| 186 | self.test_value(cpy_ulimit.eflux_ulimit(), 0.0, 1.0e-16, | 177 | self.test_value(cpy_ulimit.eflux_ulimit(), 0.0, 1.0e-16, |
| 187 | 'Check upper limit on energy flux') | 178 | 'Check upper limit on energy flux') |
| 188 | 179 | ||
| 189 | - # Now set ctulimit tool using the observation container from last | ||
| 190 | - # time. This should avoid the necessity to recompute the maximum | ||
| 191 | - # likelihood | ||
| 192 | - ulimit = ctools.ctulimit(obs) | 180 | + # Run ctlike to get an initial log-likelihood solution |
| 181 | + like = ctools.ctlike() | ||
| 182 | + like['inobs'] = self._events | ||
| 183 | + like['inmodel'] = self._model | ||
| 184 | + like['caldb'] = self._caldb | ||
| 185 | + like['irf'] = self._irf | ||
| 186 | + like.run() | ||
| 187 | + | ||
| 188 | + # Now set ctulimit tool using the observation container from the | ||
| 189 | + # previous run. This should avoid the necessity to recompute the | ||
| 190 | + # maximum likelihood | ||
| 191 | + ulimit = ctools.ctulimit(like.obs()) | ||
| 193 | ulimit['srcname'] = 'Crab' | 192 | ulimit['srcname'] = 'Crab' |
| 194 | - ulimit['logfile'] = 'ctulimit_py3.log' | ||
| 195 | - ulimit['chatter'] = 4 | 193 | + ulimit['logfile'] = 'ctulimit_py2.log' |
| 194 | + ulimit['chatter'] = 3 | ||
| 196 | 195 | ||
| 197 | # Execute ctulimit tool | 196 | # Execute ctulimit tool |
| 198 | ulimit.logFileOpen() # Needed to get a new log file | 197 | ulimit.logFileOpen() # Needed to get a new log file |
| @@ -207,11 +206,11 @@ class Test(test): | @@ -207,11 +206,11 @@ class Test(test): | ||
| 207 | 'Check upper limit on energy flux') | 206 | 'Check upper limit on energy flux') |
| 208 | 207 | ||
| 209 | # Test invalid model name | 208 | # Test invalid model name |
| 209 | + ulimit['srcname'] = 'Weihnachtsstern' | ||
| 210 | + ulimit['logfile'] = 'ctulimit_py3.log' | ||
| 211 | + ulimit.logFileOpen() | ||
| 210 | self.test_try('Test invalid model name') | 212 | self.test_try('Test invalid model name') |
| 211 | try: | 213 | try: |
| 212 | - ulimit['srcname'] = 'Weihnachtsstern' | ||
| 213 | - ulimit['logfile'] = 'ctulimit_py4.log' | ||
| 214 | - ulimit.logFileOpen() | ||
| 215 | ulimit.execute() | 214 | ulimit.execute() |
| 216 | self.test_try_failure('Exception not thrown') | 215 | self.test_try_failure('Exception not thrown') |
| 217 | except ValueError: | 216 | except ValueError: |
| @@ -219,7 +218,7 @@ class Test(test): | @@ -219,7 +218,7 @@ class Test(test): | ||
| 219 | 218 | ||
| 220 | # Test specification of background model | 219 | # Test specification of background model |
| 221 | ulimit['srcname'] = 'Background' | 220 | ulimit['srcname'] = 'Background' |
| 222 | - ulimit['logfile'] = 'ctulimit_py5.log' | 221 | + ulimit['logfile'] = 'ctulimit_py4.log' |
| 223 | ulimit.logFileOpen() | 222 | ulimit.logFileOpen() |
| 224 | self.test_try('Test invalid model name') | 223 | self.test_try('Test invalid model name') |
| 225 | try: | 224 | try: |
| @@ -228,6 +227,18 @@ class Test(test): | @@ -228,6 +227,18 @@ class Test(test): | ||
| 228 | except ValueError: | 227 | except ValueError: |
| 229 | self.test_try_success() | 228 | self.test_try_success() |
| 230 | 229 | ||
| 230 | + # Test run with too few iterations | ||
| 231 | + ulimit['srcname'] = 'Crab' | ||
| 232 | + ulimit['max_iter'] = 1 | ||
| 233 | + ulimit['logfile'] = 'ctulimit_py5.log' | ||
| 234 | + ulimit.logFileOpen() | ||
| 235 | + self.test_try('Test ctulimit with too few iterations') | ||
| 236 | + try: | ||
| 237 | + ulimit.execute() | ||
| 238 | + self.test_try_failure('Exception not thrown') | ||
| 239 | + except ValueError: | ||
| 240 | + self.test_try_success() | ||
| 241 | + | ||
| 231 | # Return | 242 | # Return |
| 232 | return | 243 | return |
| 233 | 244 |
test/test_python_cscripts.py
| @@ -23,6 +23,7 @@ import sys | @@ -23,6 +23,7 @@ import sys | ||
| 23 | import gammalib | 23 | import gammalib |
| 24 | import cscripts | 24 | import cscripts |
| 25 | sys.path.append(os.path.dirname(os.path.abspath(__file__))) | 25 | sys.path.append(os.path.dirname(os.path.abspath(__file__))) |
| 26 | +import test_cscript | ||
| 26 | import test_cscaldb | 27 | import test_cscaldb |
| 27 | import test_csfindobs | 28 | import test_csfindobs |
| 28 | import test_csinfo | 29 | import test_csinfo |
| @@ -105,65 +106,25 @@ def test(installed=False, debug=False): | @@ -105,65 +106,25 @@ def test(installed=False, debug=False): | ||
| 105 | os.system('cp -r %s/syspfiles/*.par pfiles/' % (os.environ['CTOOLS'])) | 106 | os.system('cp -r %s/syspfiles/*.par pfiles/' % (os.environ['CTOOLS'])) |
| 106 | os.system('chmod u+w pfiles/*') | 107 | os.system('chmod u+w pfiles/*') |
| 107 | 108 | ||
| 108 | - # Allocate test suite container | ||
| 109 | - suites = gammalib.GTestSuites('cscripts unit testing') | ||
| 110 | - | ||
| 111 | - # Allocate test suites | ||
| 112 | - suite_cscaldb = test_cscaldb.Test() | ||
| 113 | - suite_csinfo = test_csinfo.Test() | ||
| 114 | - suite_cslightcrv = test_cslightcrv.Test() | ||
| 115 | - suite_csmodelinfo = test_csmodelinfo.Test() | ||
| 116 | - suite_csmodelmerge = test_csmodelmerge.Test() | ||
| 117 | - suite_csobs2caldb = test_csobs2caldb.Test() | ||
| 118 | - suite_csobsdef = test_csobsdef.Test() | ||
| 119 | - suite_csobsinfo = test_csobsinfo.Test() | ||
| 120 | - suite_cspull = test_cspull.Test() | ||
| 121 | - suite_csresmap = test_csresmap.Test() | ||
| 122 | - suite_csroot2caldb = test_csroot2caldb.Test() | ||
| 123 | - suite_cssens = test_cssens.Test() | ||
| 124 | - suite_csspec = test_csspec.Test() | ||
| 125 | - suite_cstsdist = test_cstsdist.Test() | ||
| 126 | - suite_cstsmapmerge = test_cstsmapmerge.Test() | ||
| 127 | - suite_cstsmapsplit = test_cstsmapsplit.Test() | ||
| 128 | - suite_csworkflow = test_csworkflow.Test() | ||
| 129 | - | ||
| 130 | - # Setup unit tests | ||
| 131 | - suite_cscaldb.set() | ||
| 132 | - suite_csinfo.set() | ||
| 133 | - suite_cslightcrv.set() | ||
| 134 | - suite_csmodelinfo.set() | ||
| 135 | - suite_csmodelmerge.set() | ||
| 136 | - suite_csobs2caldb.set() | ||
| 137 | - suite_csobsdef.set() | ||
| 138 | - suite_csobsinfo.set() | ||
| 139 | - suite_cspull.set() | ||
| 140 | - suite_csresmap.set() | ||
| 141 | - suite_csroot2caldb.set() | ||
| 142 | - suite_cssens.set() | ||
| 143 | - suite_csspec.set() | ||
| 144 | - suite_cstsdist.set() | ||
| 145 | - suite_cstsmapmerge.set() | ||
| 146 | - suite_cstsmapsplit.set() | ||
| 147 | - suite_csworkflow.set() | ||
| 148 | - | ||
| 149 | - # Append tests to container | ||
| 150 | - suites.append(suite_cscaldb) | ||
| 151 | - suites.append(suite_csinfo) | ||
| 152 | - suites.append(suite_cslightcrv) | ||
| 153 | - suites.append(suite_csmodelinfo) | ||
| 154 | - suites.append(suite_csmodelmerge) | ||
| 155 | - suites.append(suite_csobs2caldb) | ||
| 156 | - suites.append(suite_csobsdef) | ||
| 157 | - suites.append(suite_csobsinfo) | ||
| 158 | - suites.append(suite_cspull) | ||
| 159 | - suites.append(suite_csresmap) | ||
| 160 | - suites.append(suite_csroot2caldb) | ||
| 161 | - suites.append(suite_cssens) | ||
| 162 | - suites.append(suite_csspec) | ||
| 163 | - suites.append(suite_cstsdist) | ||
| 164 | - suites.append(suite_cstsmapmerge) | ||
| 165 | - suites.append(suite_cstsmapsplit) | ||
| 166 | - suites.append(suite_csworkflow) | 109 | + # Define list of test suites |
| 110 | + tests = [test_cscript.Test(), | ||
| 111 | + test_cscaldb.Test(), | ||
| 112 | + test_csinfo.Test(), | ||
| 113 | + test_cslightcrv.Test(), | ||
| 114 | + test_csmodelinfo.Test(), | ||
| 115 | + test_csmodelmerge.Test(), | ||
| 116 | + test_csobs2caldb.Test(), | ||
| 117 | + test_csobsdef.Test(), | ||
| 118 | + test_csobsinfo.Test(), | ||
| 119 | + test_cspull.Test(), | ||
| 120 | + test_csresmap.Test(), | ||
| 121 | + test_csroot2caldb.Test(), | ||
| 122 | + test_cssens.Test(), | ||
| 123 | + test_csspec.Test(), | ||
| 124 | + test_cstsdist.Test(), | ||
| 125 | + test_cstsmapmerge.Test(), | ||
| 126 | + test_cstsmapsplit.Test(), | ||
| 127 | + test_csworkflow.Test()] | ||
| 167 | 128 | ||
| 168 | # Append tests for Python 2.6+ (the IACT cscripts depend on the json | 129 | # Append tests for Python 2.6+ (the IACT cscripts depend on the json |
| 169 | # module which is only available since Python 2.6+) | 130 | # module which is only available since Python 2.6+) |
| @@ -178,23 +139,19 @@ def test(installed=False, debug=False): | @@ -178,23 +139,19 @@ def test(installed=False, debug=False): | ||
| 178 | # impact the environment variable in the parent shell. | 139 | # impact the environment variable in the parent shell. |
| 179 | del os.environ['VHEFITS'] | 140 | del os.environ['VHEFITS'] |
| 180 | 141 | ||
| 181 | - # Allocate test suites | ||
| 182 | - suite_csfindobs = test_csfindobs.Test() | ||
| 183 | - suite_csiactcopy = test_csiactcopy.Test() | ||
| 184 | - suite_csiactdata = test_csiactdata.Test() | ||
| 185 | - suite_csiactobs = test_csiactobs.Test() | ||
| 186 | - | ||
| 187 | - # Setup unit tests | ||
| 188 | - suite_csfindobs.set() | ||
| 189 | - suite_csiactcopy.set() | ||
| 190 | - suite_csiactdata.set() | ||
| 191 | - suite_csiactobs.set() | ||
| 192 | - | ||
| 193 | - # Append tests to container | ||
| 194 | - suites.append(suite_csfindobs) | ||
| 195 | - suites.append(suite_csiactcopy) | ||
| 196 | - suites.append(suite_csiactdata) | ||
| 197 | - suites.append(suite_csiactobs) | 142 | + # Append IACT script tests to list of test suites |
| 143 | + tests.extend([test_csfindobs.Test(), | ||
| 144 | + test_csiactcopy.Test(), | ||
| 145 | + test_csiactdata.Test(), | ||
| 146 | + test_csiactobs.Test()]) | ||
| 147 | + | ||
| 148 | + # Allocate test suite container | ||
| 149 | + suites = gammalib.GTestSuites('cscripts unit testing') | ||
| 150 | + | ||
| 151 | + # Set test suites and append them to suite container | ||
| 152 | + for suite in tests: | ||
| 153 | + suite.set() | ||
| 154 | + suites.append(suite) | ||
| 198 | 155 | ||
| 199 | # Run test suite | 156 | # Run test suite |
| 200 | success = suites.run() | 157 | success = suites.run() |
test/test_python_ctools.py
| @@ -99,65 +99,32 @@ def test(installed=False): | @@ -99,65 +99,32 @@ def test(installed=False): | ||
| 99 | os.system('cp -r %s/syspfiles/*.par pfiles/' % (os.environ['CTOOLS'])) | 99 | os.system('cp -r %s/syspfiles/*.par pfiles/' % (os.environ['CTOOLS'])) |
| 100 | os.system('chmod u+w pfiles/*') | 100 | os.system('chmod u+w pfiles/*') |
| 101 | 101 | ||
| 102 | + # Define list of test suites | ||
| 103 | + tests = [test_ctobssim.Test(), | ||
| 104 | + test_ctselect.Test(), | ||
| 105 | + test_ctbin.Test(), | ||
| 106 | + test_ctlike.Test(), | ||
| 107 | + test_cttsmap.Test(), | ||
| 108 | + test_ctmodel.Test(), | ||
| 109 | + test_ctskymap.Test(), | ||
| 110 | + test_ctexpcube.Test(), | ||
| 111 | + test_ctpsfcube.Test(), | ||
| 112 | + test_ctedispcube.Test(), | ||
| 113 | + test_ctbkgcube.Test(), | ||
| 114 | + test_ctmapcube.Test(), | ||
| 115 | + test_ctcubemask.Test(), | ||
| 116 | + test_ctbutterfly.Test(), | ||
| 117 | + test_ctulimit.Test(), | ||
| 118 | + test_cterror.Test(), | ||
| 119 | + test_pipelines.Test()] | ||
| 120 | + | ||
| 102 | # Allocate test suite container | 121 | # Allocate test suite container |
| 103 | suites = gammalib.GTestSuites('ctools unit testing') | 122 | suites = gammalib.GTestSuites('ctools unit testing') |
| 104 | 123 | ||
| 105 | - # Allocate test suites and append them to the container | ||
| 106 | - suite_ctobssim = test_ctobssim.Test() | ||
| 107 | - suite_ctselect = test_ctselect.Test() | ||
| 108 | - suite_ctbin = test_ctbin.Test() | ||
| 109 | - suite_ctlike = test_ctlike.Test() | ||
| 110 | - suite_cttsmap = test_cttsmap.Test() | ||
| 111 | - suite_ctmodel = test_ctmodel.Test() | ||
| 112 | - suite_ctskymap = test_ctskymap.Test() | ||
| 113 | - suite_ctexpcube = test_ctexpcube.Test() | ||
| 114 | - suite_ctpsfcube = test_ctpsfcube.Test() | ||
| 115 | - suite_ctedispcube = test_ctedispcube.Test() | ||
| 116 | - suite_ctbkgcube = test_ctbkgcube.Test() | ||
| 117 | - suite_ctmapcube = test_ctmapcube.Test() | ||
| 118 | - suite_ctcubemask = test_ctcubemask.Test() | ||
| 119 | - suite_ctbutterfly = test_ctbutterfly.Test() | ||
| 120 | - suite_ctulimit = test_ctulimit.Test() | ||
| 121 | - suite_cterror = test_cterror.Test() | ||
| 122 | - suite_pipelines = test_pipelines.Test() | ||
| 123 | - | ||
| 124 | - # Setup unit tests | ||
| 125 | - suite_ctobssim.set() | ||
| 126 | - suite_ctselect.set() | ||
| 127 | - suite_ctbin.set() | ||
| 128 | - suite_ctlike.set() | ||
| 129 | - suite_cttsmap.set() | ||
| 130 | - suite_ctmodel.set() | ||
| 131 | - suite_ctskymap.set() | ||
| 132 | - suite_ctexpcube.set() | ||
| 133 | - suite_ctpsfcube.set() | ||
| 134 | - suite_ctedispcube.set() | ||
| 135 | - suite_ctbkgcube.set() | ||
| 136 | - suite_ctmapcube.set() | ||
| 137 | - suite_ctcubemask.set() | ||
| 138 | - suite_ctbutterfly.set() | ||
| 139 | - suite_ctulimit.set() | ||
| 140 | - suite_cterror.set() | ||
| 141 | - suite_pipelines.set() | ||
| 142 | - | ||
| 143 | - # Append tests to container | ||
| 144 | - suites.append(suite_ctobssim) | ||
| 145 | - suites.append(suite_ctselect) | ||
| 146 | - suites.append(suite_ctbin) | ||
| 147 | - suites.append(suite_ctlike) | ||
| 148 | - suites.append(suite_cttsmap) | ||
| 149 | - suites.append(suite_ctmodel) | ||
| 150 | - suites.append(suite_ctskymap) | ||
| 151 | - suites.append(suite_ctexpcube) | ||
| 152 | - suites.append(suite_ctpsfcube) | ||
| 153 | - suites.append(suite_ctedispcube) | ||
| 154 | - suites.append(suite_ctbkgcube) | ||
| 155 | - suites.append(suite_ctmapcube) | ||
| 156 | - suites.append(suite_ctcubemask) | ||
| 157 | - suites.append(suite_ctbutterfly) | ||
| 158 | - suites.append(suite_ctulimit) | ||
| 159 | - suites.append(suite_cterror) | ||
| 160 | - suites.append(suite_pipelines) | 124 | + # Set test suites and append them to suite container |
| 125 | + for suite in tests: | ||
| 126 | + suite.set() | ||
| 127 | + suites.append(suite) | ||
| 161 | 128 | ||
| 162 | # Run test suite | 129 | # Run test suite |
| 163 | success = suites.run() | 130 | success = suites.run() |