Thierry Reposeur / ctools

Commit 42aae29758cf375a4709aa5d69646bb0ccd024b7

Authored by Jürgen Knödlseder
1 parent 809bc8f6

Integrate code

Inline Side-by-side
Showing 6 changed files with 112 additions and 116 deletions
ChangeLog
  View file @42aae29
1   -2015-02-23 Juergen Knoedlseder <jurgen.knodlseder@irap.omp.eu>
  1 +2015-03-28 Juergen Knoedlseder <jurgen.knodlseder@irap.omp.eu>
2 2  
3 3 * Version 1.0.0 released
4 4 ========================
... ... @@ -9,6 +9,7 @@
9 9 Modify cssens parameter interface (#1426)
10 10 Add csobsdef script (#1429)
11 11 Add ctulimit tool (#1363)
  12 + Handle background cubes for stacked analysis (#1371)
12 13  
13 14  
14 15 2015-01-08 Juergen Knoedlseder <jurgen.knodlseder@irap.omp.eu>
... ...
... ... @@ -2,7 +2,7 @@ New Features and Important Changes in ctools 1.0.0
2 2  
3 3 Author(s) : Juergen Knoedlseder
4 4  
5   -23 February 2015
  5 +28 March 2015
6 6  
7 7  
8 8 1. Introduction
... ... @@ -49,12 +49,14 @@ None
49 49  
50 50 8. ctlike - Maximum likelihood fitting
51 51 --------------------------------------
52   -None
  52 +The bkgcube parameter has been added to allow specification of a background
  53 +cube for stacked analysis.
53 54  
54 55  
55 56 9. cttsmap - Generation of Test Statistics map
56 57 ----------------------------------------------
57   -None
  58 +The bkgcube parameter has been added to allow specification of a background
  59 +cube for stacked analysis.
58 60  
59 61  
60 62 10. ctskymap - CTA sky mapping
... ... @@ -64,7 +66,8 @@ None
64 66  
65 67 11. ctmodel - CTA counts cube modelling
66 68 ---------------------------------------
67   -None
  69 +The bkgcube parameter has been added to allow specification of a background
  70 +cube for stacked analysis.
68 71  
69 72  
70 73 12. ctexpcube - CTA exposure cube generation
... ... @@ -89,13 +92,17 @@ None
89 92  
90 93 16. ctbutterfly - Generate butterfly diagrams
91 94 ---------------------------------------------
92   -None
  95 +The bkgcube parameter has been added to allow specification of a background
  96 +cube for stacked analysis.
93 97  
94 98  
95 99 17. ctulimit - Compute upper limit
96 100 ----------------------------------
97 101 Added an initial version of the upper limit computation tool.
98 102  
  103 +The bkgcube parameter has been added to allow specification of a background
  104 +cube for stacked analysis.
  105 +
99 106  
100 107 18. Examples
101 108 ------------
... ...
pyext/ctbkgcube.i
  View file @42aae29
1 1 /***************************************************************************
2 2 * ctbkgcube - Background cube generation tool *
3 3 * ----------------------------------------------------------------------- *
4   - * copyright (C) 2014 by Chia-Chun Lu *
  4 + * copyright (C) 2014-2015 by Chia-Chun Lu *
5 5 * ----------------------------------------------------------------------- *
6 6 * *
7 7 * This program is free software: you can redistribute it and/or modify *
... ... @@ -44,11 +44,11 @@ public:
44 44 virtual ~ctbkgcube(void);
45 45  
46 46 // Methods
47   - void clear(void);
48   - void run(void);
49   - void save(void);
  47 + void clear(void);
  48 + void run(void);
  49 + void save(void);
50 50 const GCTACubeBackground& cube(void) const;
51   - const GModels& models(void) const;
  51 + const GModels& models(void) const;
52 52 };
53 53  
54 54 /***********************************************************************//**
... ...
src/ctbkgcube/ctbkgcube.cpp
  View file @42aae29
... ... @@ -34,7 +34,6 @@
34 34  
35 35 /* __ Method name definitions ____________________________________________ */
36 36 #define G_GET_PARAMETERS "ctbkgcube::get_parameters()"
37   -#define G_FILL_CUBE "ctbkgcube::fill_cube(GCTAObservation*)"
38 37  
39 38 /* __ Debug definitions __________________________________________________ */
40 39  
... ... @@ -246,14 +245,13 @@ void ctbkgcube::run(void)
246 245 // Copy models from observation container and reset output model
247 246 // container
248 247 GModels models_orig = m_obs.models();
249   - m_bkgmdl = m_obs.models();
  248 + m_bkgmdl = m_obs.models();
250 249 m_outmdl.clear();
251 250  
252 251 // Remove all models that are not CTA background models from the
253 252 // container and put all removed components in the output
254 253 // container
255 254 int num = m_bkgmdl.size();
256   -
257 255 for (int i = num-1; i >= 0; --i) {
258 256  
259 257 // Flag removal
... ... @@ -315,21 +313,18 @@ void ctbkgcube::run(void)
315 313 // Create a background model for the output background cube and append
316 314 // that model to the input model in place of the original
317 315 // background models
318   - // Todo: We might think of creating the spectral model via user parameter
319   - GCTAModelCubeBackground model(GModelSpectralConst(1.0));
  316 + // TODO: We might think of creating the spectral model via user parameter
  317 + GModelSpectralPlaw spectral(1.0, 0.0, GEnergy(1.0, "TeV"));
  318 + GCTAModelCubeBackground model(spectral);
320 319  
321 320 // Set model name
322 321 model.name("BackgroundModel");
323 322  
324 323 // Set model instrument
325   - // Todo: Account for possibility to have observations from different
  324 + // TODO: Account for possibility to have observations from different
326 325 // IACTs in the same container
327 326 model.instruments("CTA,HESS,MAGIC,VERITAS");
328 327  
329   - // Set model identifier to "0". This is coupled to ctbin, where the binned output
330   - // observation id is set to 0.
331   - model.ids("0");
332   -
333 328 // Append model to output container
334 329 m_outmdl.append(model);
335 330  
... ... @@ -361,7 +356,6 @@ void ctbkgcube::save(void)
361 356 log.header1("Save background cube");
362 357 }
363 358  
364   -
365 359 // Get output filenames
366 360 std::string outfile = (*this)["outcube"].filename();
367 361 std::string outmodel = (*this)["outmodel"].filename();
... ... @@ -374,6 +368,7 @@ void ctbkgcube::save(void)
374 368  
375 369 // Save output model for binned analyses
376 370 m_outmdl.save(outmodel);
  371 +
377 372 }
378 373  
379 374 // Return
... ... @@ -399,7 +394,6 @@ void ctbkgcube::init_members(void)
399 394 m_background.clear();
400 395 m_bkgmdl.clear();
401 396 m_outmdl.clear();
402   - m_ebounds.clear();
403 397  
404 398 // Return
405 399 return;
... ... @@ -420,7 +414,6 @@ void ctbkgcube::copy_members(const ctbkgcube&amp; app)
420 414 m_background = app.m_background;
421 415 m_bkgmdl = app.m_bkgmdl;
422 416 m_outmdl = app.m_outmdl;
423   - m_ebounds = app.m_ebounds;
424 417  
425 418 // Return
426 419 return;
... ... @@ -498,9 +491,6 @@ void ctbkgcube::get_parameters(void)
498 491 m_obs.models(models);
499 492 }
500 493  
501   -// // Get energy definition
502   -// m_ebounds = m_background.ebounds();
503   -
504 494 // Read output filenames (if needed)
505 495 if (read_ahead()) {
506 496 m_outcube = (*this)["outcube"].filename();
... ...
src/ctbkgcube/ctbkgcube.hpp
  View file @42aae29
... ... @@ -56,11 +56,11 @@ public:
56 56 ctbkgcube& operator=(const ctbkgcube& app);
57 57  
58 58 // Methods
59   - void clear(void);
60   - void run(void);
61   - void save(void);
  59 + void clear(void);
  60 + void run(void);
  61 + void save(void);
62 62 const GCTACubeBackground& cube(void) const;
63   - const GModels& models(void) const;
  63 + const GModels& models(void) const;
64 64  
65 65 protected:
66 66 // Protected methods
... ... @@ -71,14 +71,12 @@ protected:
71 71 void fill_cube(GCTAObservation* obs);
72 72  
73 73 // Protected members
74   - std::string m_outcube; //!< Filename of output cube
75   - std::string m_outmodel; //!< Filename of output XML model
76   - GObservations m_obs; //!< Observation container
77   - GCTACubeBackground m_background; //!< Background cube response
78   - GModels m_bkgmdl; //!< CTA background models
79   - GModels m_outmdl; //!< Output models
80   - GEbounds m_ebounds; //!< Energy boundaries
81   -
  74 + std::string m_outcube; //!< Filename of output cube
  75 + std::string m_outmodel; //!< Filename of output XML model
  76 + GObservations m_obs; //!< Observation container
  77 + GCTACubeBackground m_background; //!< Background cube response
  78 + GModels m_bkgmdl; //!< CTA background models
  79 + GModels m_outmdl; //!< Output models
82 80 };
83 81  
84 82  
... ...
test/test_ctools.sh
  View file @42aae29
... ... @@ -179,20 +179,20 @@ $ECHO -n &quot;Test ctexpcube: &quot;
179 179 #
180 180 # Run 1
181 181 $ctexpcube inobs="data/crab_events.fits" \
182   -incube="NONE" \
183   -outcube="expcube1.fits" \
184   -caldb="irf" \
185   -irf="cta_dummy_irf" \
186   -emin=0.1 \
187   -emax=100.0 \
188   -enumbins=20 \
189   -nxpix=200 \
190   -nypix=200 \
191   -binsz=0.02 \
192   -coordsys="CEL" \
193   -xref=83.63 \
194   -yref=22.01 \
195   -proj="CAR"
  182 + incube="NONE" \
  183 + outcube="expcube1.fits" \
  184 + caldb="irf" \
  185 + irf="cta_dummy_irf" \
  186 + emin=0.1 \
  187 + emax=100.0 \
  188 + enumbins=20 \
  189 + nxpix=200 \
  190 + nypix=200 \
  191 + binsz=0.02 \
  192 + coordsys="CEL" \
  193 + xref=83.63 \
  194 + yref=22.01 \
  195 + proj="CAR"
196 196 $ECHO -n "."
197 197 if [ -s "expcube1.fits" ]
198 198 then
... ... @@ -204,10 +204,10 @@ fi
204 204 #
205 205 # Run 2
206 206 $ctexpcube inobs="events.fits" \
207   -incube="cntmap2.fits" \
208   -outcube="expcube2.fits" \
209   -caldb="irf" \
210   -irf="cta_dummy_irf"
  207 + incube="cntmap2.fits" \
  208 + outcube="expcube2.fits" \
  209 + caldb="irf" \
  210 + irf="cta_dummy_irf"
211 211 $ECHO -n "."
212 212 if [ -s "expcube2.fits" ]
213 213 then
... ... @@ -226,22 +226,22 @@ $ECHO -n &quot;Test ctpsfcube: &quot;
226 226 #
227 227 # Run 1
228 228 $ctpsfcube inobs="data/crab_events.fits" \
229   -incube="NONE" \
230   -outcube="psfcube1.fits" \
231   -caldb="irf" \
232   -irf="cta_dummy_irf" \
233   -emin=0.1 \
234   -emax=100.0 \
235   -enumbins=20 \
236   -nxpix=10 \
237   -nypix=10 \
238   -binsz=0.4 \
239   -coordsys="CEL" \
240   -xref=83.63 \
241   -yref=22.01 \
242   -proj="CAR" \
243   -amax=0.3 \
244   -anumbins=10
  229 + incube="NONE" \
  230 + outcube="psfcube1.fits" \
  231 + caldb="irf" \
  232 + irf="cta_dummy_irf" \
  233 + emin=0.1 \
  234 + emax=100.0 \
  235 + enumbins=20 \
  236 + nxpix=10 \
  237 + nypix=10 \
  238 + binsz=0.4 \
  239 + coordsys="CEL" \
  240 + xref=83.63 \
  241 + yref=22.01 \
  242 + proj="CAR" \
  243 + amax=0.3 \
  244 + anumbins=10
245 245 $ECHO -n "."
246 246 if [ -s "psfcube1.fits" ]
247 247 then
... ... @@ -253,12 +253,12 @@ fi
253 253 #
254 254 # Run 2
255 255 $ctpsfcube inobs="events.fits" \
256   -incube="cntmap2.fits" \
257   -outcube="psfcube2.fits" \
258   -caldb="irf" \
259   -irf="cta_dummy_irf" \
260   -amax=0.3 \
261   -anumbins=2
  256 + incube="cntmap2.fits" \
  257 + outcube="psfcube2.fits" \
  258 + caldb="irf" \
  259 + irf="cta_dummy_irf" \
  260 + amax=0.3 \
  261 + anumbins=2
262 262 $ECHO -n "."
263 263 if [ -s "psfcube2.fits" ]
264 264 then
... ... @@ -277,22 +277,22 @@ $ECHO -n &quot;Test ctbkgcube: &quot;
277 277 #
278 278 # Run 1
279 279 $ctbkgcube inobs="data/crab_events.fits" \
280   -inmodel="data/crab.xml" \
281   -incube="NONE" \
282   -outcube="bkgcube1.fits" \
283   -outmodel="bkgcube1.xml" \
284   -caldb="irf" \
285   -irf="cta_dummy_irf" \
286   -emin=0.1 \
287   -emax=100.0 \
288   -enumbins=20 \
289   -nxpix=10 \
290   -nypix=10 \
291   -binsz=0.4 \
292   -coordsys="CEL" \
293   -xref=83.63 \
294   -yref=22.01 \
295   -proj="CAR"
  280 + inmodel="data/crab.xml" \
  281 + incube="NONE" \
  282 + outcube="bkgcube1.fits" \
  283 + outmodel="bkgcube1.xml" \
  284 + caldb="irf" \
  285 + irf="cta_dummy_irf" \
  286 + emin=0.1 \
  287 + emax=100.0 \
  288 + enumbins=20 \
  289 + nxpix=10 \
  290 + nypix=10 \
  291 + binsz=0.4 \
  292 + coordsys="CEL" \
  293 + xref=83.63 \
  294 + yref=22.01 \
  295 + proj="CAR"
296 296 $ECHO -n "."
297 297 if [ -s "bkgcube1.fits" ]
298 298 then
... ... @@ -311,12 +311,12 @@ fi
311 311 #
312 312 # Run 2
313 313 $ctbkgcube inobs="events.fits" \
314   -inmodel="data/crab.xml" \
315   -incube="cntmap2.fits" \
316   -caldb="irf" \
317   -irf="cta_dummy_irf" \
318   -outcube="bkgcube2.fits" \
319   -outmodel="bkgcube2.xml"
  314 + inmodel="data/crab.xml" \
  315 + incube="cntmap2.fits" \
  316 + caldb="irf" \
  317 + irf="cta_dummy_irf" \
  318 + outcube="bkgcube2.fits" \
  319 + outmodel="bkgcube2.xml"
320 320 $ECHO -n "."
321 321 if [ -s "bkgcube2.fits" ]
322 322 then
... ... @@ -347,7 +347,7 @@ $ctmodel inobs=&quot;cntmap1.fits&quot; \
347 347 outcube="modmap1.fits" \
348 348 expcube="NONE" \
349 349 psfcube="NONE" \
350   - bgcube="NONE" \
  350 + bkgcube="NONE" \
351 351 caldb="irf" \
352 352 irf="cta_dummy_irf" \
353 353 inmodel="data/crab.xml"
... ... @@ -362,14 +362,14 @@ fi
362 362 #
363 363 # Run 2
364 364 $ctmodel inobs="cntmap2.fits" \
365   -incube="cntmap2.fits" \
366   -outcube="modmap2.fits" \
367   -expcube="expcube2.fits" \
368   -psfcube="psfcube2.fits" \
369   -bgcube="bkgcube2.fits" \
370   -caldb="irf" \
371   -irf="cta_dummy_irf" \
372   -inmodel="bkgcube2.xml"
  365 + incube="cntmap2.fits" \
  366 + outcube="modmap2.fits" \
  367 + expcube="expcube2.fits" \
  368 + psfcube="psfcube2.fits" \
  369 + bkgcube="bkgcube2.fits" \
  370 + caldb="irf" \
  371 + irf="cta_dummy_irf" \
  372 + inmodel="bkgcube2.xml"
373 373 $ECHO -n "."
374 374 if [ -s "modmap2.fits" ]
375 375 then
... ... @@ -448,7 +448,7 @@ $ctlike inobs=&quot;cntmap1.fits&quot; \
448 448 outmodel="results_binned.xml" \
449 449 expcube="NONE" \
450 450 psfcube="NONE" \
451   - bgcube="NONE" \
  451 + bkgcube="NONE" \
452 452 caldb="irf" \
453 453 irf="cta_dummy_irf"
454 454 $ECHO -n "."
... ... @@ -482,7 +482,7 @@ $ctlike inobs=&quot;cntmap2.fits&quot; \
482 482 outmodel="results_binned_cube_background.xml" \
483 483 expcube="expcube2.fits" \
484 484 psfcube="psfcube2.fits" \
485   - bgcube="bkgcube2.fits" \
  485 + bkgcube="bkgcube2.fits" \
486 486 caldb="irf" \
487 487 irf="cta_dummy_irf"
488 488 $ECHO -n "."
... ... @@ -577,10 +577,10 @@ $ECHO &quot; ok&quot;
577 577 # ===============
578 578 $ECHO -n "Test ctulimit: "
579 579 $ctulimit inobs="data/crab_events.fits.gz" \
580   - inmodel="data/crab.xml" \
581   - srcname="Crab" \
582   - caldb="irf" \
583   - irf="cta_dummy_irf"
  580 + inmodel="data/crab.xml" \
  581 + srcname="Crab" \
  582 + caldb="irf" \
  583 + irf="cta_dummy_irf"
584 584 $ECHO -n "."
585 585 if [ -s "ctulimit.log" ]
586 586 then
... ...