ctobssim.cpp
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/***************************************************************************
* ctobssim - Observation simulator tool *
* ----------------------------------------------------------------------- *
* copyright (C) 2011-2019 by Juergen Knoedlseder *
* ----------------------------------------------------------------------- *
* *
* This program is free software: you can redistribute it and/or modify *
* it under the terms of the GNU General Public License as published by *
* the Free Software Foundation, either version 3 of the License, or *
* (at your option) any later version. *
* *
* This program is distributed in the hope that it will be useful, *
* but WITHOUT ANY WARRANTY; without even the implied warranty of *
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the *
* GNU General Public License for more details. *
* *
* You should have received a copy of the GNU General Public License *
* along with this program. If not, see <http://www.gnu.org/licenses/>. *
* *
***************************************************************************/
/**
* @file ctobssim.cpp
* @brief Observation simulator tool implementation
* @author Juergen Knoedlseder
*/
/* __ Includes ___________________________________________________________ */
#ifdef HAVE_CONFIG_H
#include <config.h>
#endif
#include <cstdio>
#include <typeinfo>
#include "ctobssim.hpp"
#include "GTools.hpp"
#include "GFits.hpp"
/* __ OpenMP section _____________________________________________________ */
#ifdef _OPENMP
#include <omp.h>
#endif
/* __ Method name definitions ____________________________________________ */
#define G_GET_PARAMETERS "ctobssim::get_parameters()"
#define G_SIMULATE_SOURCE "ctobssim::simulate_source(GCTAObservation*, "\
"GModels&, GRan&, GLog*)"
#define G_SIMULATE_INTERVAL "ctobssim::simulate_interval(GCTAObservation*"\
", GCTAEventList*, GCTAResponseIrf*, GModels&, GTime&"\
", GTime&, GEnergy&, GEnergy&, GEnergy&, GEnergy&"\
", GSkyDir&, double&, double&, GRan&, GLog*, int&)"
#define G_GET_AREA "ctobssim::get_area(GCTAObservation* obs, GEnergy&, "\
"GEnergy&)"
/* __ Constants __________________________________________________________ */
const double g_roi_margin = 0.5; //!< Simulation radius margin (degrees)
/* __ Debug definitions __________________________________________________ */
//#define G_SOURCE_DEBUG
//#define G_BACKGROUND_DEBUG
/* __ Coding definitions _________________________________________________ */
/*==========================================================================
= =
= Constructors/destructors =
= =
==========================================================================*/
/***********************************************************************//**
* @brief Void constructor
*
* Constructs an empty ctobssim tool.
***************************************************************************/
ctobssim::ctobssim(void) : ctobservation(CTOBSSIM_NAME, VERSION)
{
// Initialise members
init_members();
// Return
return;
}
/***********************************************************************//**
* @brief Observations constructor
*
* @param[in] obs Observation container.
*
* Constructs ctobssim tool from an observation container.
***************************************************************************/
ctobssim::ctobssim(const GObservations& obs) :
ctobservation(CTOBSSIM_NAME, VERSION, obs)
{
// Initialise members
init_members();
// Return
return;
}
/***********************************************************************//**
* @brief Command line constructor
*
* @param[in] argc Number of arguments in command line.
* @param[in] argv Array of command line arguments.
*
* Constructs ctobssim tool using command line arguments for user parameter
* setting.
***************************************************************************/
ctobssim::ctobssim(int argc, char *argv[]) :
ctobservation(CTOBSSIM_NAME, VERSION, argc, argv)
{
// Initialise members
init_members();
// Return
return;
}
/***********************************************************************//**
* @brief Copy constructor
*
* @param[in] app Application.
*
* Constructs ctobssim tool from another ctobssim instance.
***************************************************************************/
ctobssim::ctobssim(const ctobssim& app) : ctobservation(app)
{
// Initialise members
init_members();
// Copy members
copy_members(app);
// Return
return;
}
/***********************************************************************//**
* @brief Destructor
*
* Destructs ctobssim tool.
***************************************************************************/
ctobssim::~ctobssim(void)
{
// Free members
free_members();
// Return
return;
}
/*==========================================================================
= =
= Operators =
= =
==========================================================================*/
/***********************************************************************//**
* @brief Assignment operator
*
* @param[in] app ctobssim tool.
* @return ctobssim tool.
*
* Assigns ctobssim tool.
***************************************************************************/
ctobssim& ctobssim::operator=(const ctobssim& app)
{
// Execute only if object is not identical
if (this != &app) {
// Copy base class members
this->ctobservation::operator=(app);
// Free members
free_members();
// Initialise members
init_members();
// Copy members
copy_members(app);
} // endif: object was not identical
// Return this object
return *this;
}
/*==========================================================================
= =
= Public methods =
= =
==========================================================================*/
/***********************************************************************//**
* @brief Clear ctobssim tool
*
* Clears ctobssim tool.
***************************************************************************/
void ctobssim::clear(void)
{
// Free members
free_members();
this->ctobservation::free_members();
this->ctool::free_members();
// Clear base class (needed to conserve tool name and version)
this->GApplication::clear();
// Initialise members
this->ctool::init_members();
this->ctobservation::init_members();
init_members();
// Write header into logger
log_header();
// Return
return;
}
/***********************************************************************//**
* @brief Run the ctobssim tool.
*
* Gets the user parameters, loops over all CTA observations in the
* observation container, and simulate events for each observation.
***************************************************************************/
void ctobssim::run(void)
{
// Switch screen logging on in debug mode
if (logDebug()) {
log.cout(true);
}
// Get parameters
get_parameters();
// Special mode: if read ahead is specified we know that we called
// the execute() method, hence files are saved immediately and event
// lists are disposed afterwards.
if (read_ahead()) {
m_save_and_dispose = true;
}
// Set energy dispersion flags of all CTA observations and save old
// values in save_edisp vector
std::vector<bool> save_edisp = set_edisp(m_obs, m_apply_edisp);
// Determine the number of valid CTA observations
int n_observations = 0;
for (int i = 0; i < m_obs.size(); ++i) {
GCTAObservation* obs = dynamic_cast<GCTAObservation*>(m_obs[i]);
if (obs != NULL) {
n_observations++;
}
}
// If more than a single observation has been handled then make sure that
// an XML file will be used for storage
if (n_observations > 1) {
m_use_xml = true;
}
// Write execution model into logger
log_header1(NORMAL, "Execution mode");
std::string mode = (m_save_and_dispose)
? "Save and dispose (reduces memory needs)"
: "Keep events in memory";
std::string xml = (m_use_xml)
? "Write Observation Definition XML file"
: "Write single event list FITS file";
log_value(NORMAL, "Event list management", mode);
log_value(NORMAL, "Output format", xml);
// Write seed values into logger
log_header1(NORMAL, "Seed values");
for (int i = 0; i < m_rans.size(); ++i) {
log_value(NORMAL, "Seed "+gammalib::str(i),
gammalib::str(m_rans[i].seed()));
}
// Write input observation container into logger
log_observations(NORMAL, m_obs, "Input observation");
// Write header
log_header1(TERSE, gammalib::number("Simulate observation", m_obs.size()));
// From here on the code can be parallelized if OpenMP support
// is enabled. The code in the following block corresponds to the
// code that will be executed in each thread
#pragma omp parallel
{
// Each thread will have it's own logger to avoid conflicts
GLog wrklog;
if (logDebug()) {
wrklog.cout(true);
}
// Allocate and initialize copies for multi-threading
GModels models(m_obs.models());
// Copy configuration from application logger to thread logger
wrklog.date(log.date());
wrklog.name(log.name());
// Set a big value to avoid flushing
wrklog.buffer_size(10000000);
// Loop over all observation in the container. If OpenMP support
// is enabled, this loop will be parallelized.
#pragma omp for
for (int i = 0; i < m_obs.size(); ++i) {
// Write header for observation
if (logTerse()) {
wrklog.header3(get_obs_header(m_obs[i]));
}
// Get pointer on CTA observation
GCTAObservation* obs = dynamic_cast<GCTAObservation*>(m_obs[i]);
// Skip observation if it's not CTA
if (obs == NULL) {
if (logTerse()) {
wrklog << " Skipping ";
wrklog << m_obs[i]->instrument();
wrklog << " observation" << std::endl;
}
continue;
}
// Skip observation if we have a binned observation
if (obs->eventtype() == "CountsCube") {
if (logTerse()) {
wrklog << " Skipping binned ";
wrklog << obs->instrument();
wrklog << " observation" << std::endl;
}
continue;
}
// If observation identifier is not yet set then set it now
if (obs->id().empty()) {
char buffer[256];
std::sprintf(buffer, "%6.6d", i + m_startindex);
obs->id(std::string(buffer));
}
// Remove now all events from the event list but keep the
// event list information such as ROI, Good Time Intervals,
// energy boundaries. This will also keep additional columns
// in an event list file.
GCTAEventList* events = static_cast<GCTAEventList*>(obs->events());
events->remove(0, events->size());
// Work on a clone of the CTA observation. This makes sure that
// any memory allocated for computing (for example a response
// cache) is properly de-allocated on exit of this run
GCTAObservation obs_clone = *obs;
// Save number of events before entering simulation
int events_before = obs_clone.events()->size();
// Simulate source events
simulate_source(&obs_clone, models, m_rans[i], &wrklog);
// Simulate background events
simulate_background(&obs_clone, models, m_rans[i], &wrklog);
// Set Monte Carlo identifier and name correspondance
set_mc_id_names(&obs_clone, models, &wrklog);
// Dump simulation results
if (logTerse()) {
wrklog << gammalib::parformat("MC events");
wrklog << obs_clone.events()->size() - events_before;
wrklog << " (all models)";
wrklog << std::endl;
}
// Append the event list to the original observation
obs->events(*(obs_clone.events()));
// If requested, event lists are saved immediately
if (m_save_and_dispose) {
// Set event output file name
std::string outfile = this->outfile(i);
// Store output file name in original observation
obs->eventfile(outfile);
// Save observation into FITS file. This is a critical zone
// to avoid multiple threads writing simultaneously
#pragma omp critical(ctobssim_run)
{
//obs_clone.save(outfile, clobber());
obs->save(outfile, clobber());
}
// Dispose events
obs->dispose_events();
} // endif: save and dispose requested
} // endfor: looped over observations
// At the end, the content of the thread logger is added to
// the application logger
#pragma omp critical (log)
{
log << wrklog;
}
} // end pragma omp parallel
// Restore energy dispersion flags of all CTA observations
restore_edisp(m_obs, save_edisp);
// Optionally publish event list(s)
if ((*this)["publish"].boolean()) {
publish();
}
// Return
return;
}
/***********************************************************************//**
* @brief Save the selected event list(s)
*
* This method saves the selected event list(s) into FITS file(s). There are
* two modes, depending on the m_use_xml flag.
*
* If m_use_xml is true, all selected event list(s) will be saved into FITS
* files, where the output filenames are constructued from the input
* filenames by prepending the m_prefix string to name. Any path information
* will be stripped form the input name, hence event files will be written
* into the local working directory (unless some path information is present
* in the prefix). In addition, an XML file will be created that gathers
* the filename information for the selected event list(s). If an XML file
* was present on input, all metadata information will be copied from this
* input file.
*
* If m_use_xml is false, the selected event list will be saved into a FITS
* file.
***************************************************************************/
void ctobssim::save(void)
{
// Write header into logger
log_header1(TERSE, gammalib::number("Save observation", m_obs.size()));
// Case A: Save event file(s) and XML metadata information
if (m_use_xml) {
save_xml();
}
// Case B: Save event file as FITS file
else {
save_fits();
}
// Return
return;
}
/***********************************************************************//**
* @brief Publish event lists
*
* @param[in] name Event list name.
***************************************************************************/
void ctobssim::publish(const std::string& name)
{
// Write header into logger
log_header1(TERSE, gammalib::number("Publish event list", m_obs.size()));
// Loop over all observation in the container
for (int i = 0; i < m_obs.size(); ++i) {
// Get CTA observation
GCTAObservation* obs = dynamic_cast<GCTAObservation*>(m_obs[i]);
// Handle only CTA observations
if (obs != NULL) {
// Continue only if there is an event list
if (obs->events()->size() != 0) {
// Set default name if user name is empty
std::string user_name(name);
if (user_name.empty()) {
user_name = CTOBSSIM_NAME;
}
// If there are several event lists then add an index
if (m_use_xml) {
user_name += gammalib::str(i);
}
// Write event list name into logger
log_value(NORMAL, "Event list name", user_name);
// Write events into in-memory FITS file
GFits fits;
obs->write(fits);
// Publish
fits.publish(gammalib::extname_cta_events, user_name);
} // endif: there were events
} // endif: observation was a CTA observation
} // endfor: looped over observations
// Return
return;
}
/*==========================================================================
= =
= Private methods =
= =
==========================================================================*/
/***********************************************************************//**
* @brief Initialise class members
*
* The thrown area is fixed to pi*(2500^2) m2, which is the same value that
* is used in the Monte Carlo simulations (information from Konrad Bernloehr)
***************************************************************************/
void ctobssim::init_members(void)
{
// Initialise user parameters
m_outevents.clear();
m_prefix.clear();
m_startindex = 1;
m_seed = 1;
m_eslices = 10;
m_apply_edisp = false;
m_max_rate = 1.0e6;
// Initialise protected members
m_rans.clear();
m_save_and_dispose = false;
// Set fixed parameters
m_max_photons = 1000000; //!< Maximum number of photons / time slice
// Initialise first event identifier
m_event_id = 1;
// Return
return;
}
/***********************************************************************//**
* @brief Copy class members
*
* @param[in] app Application.
***************************************************************************/
void ctobssim::copy_members(const ctobssim& app)
{
// Copy user parameters
m_outevents = app.m_outevents;
m_prefix = app.m_prefix;
m_startindex = app.m_startindex;
m_seed = app.m_seed;
m_eslices = app.m_eslices;
m_apply_edisp = app.m_apply_edisp;
m_max_rate = app.m_max_rate;
// Copy protected members
m_max_photons = app.m_max_photons;
m_rans = app.m_rans;
m_save_and_dispose = app.m_save_and_dispose;
m_event_id = app.m_event_id;
// Return
return;
}
/***********************************************************************//**
* @brief Delete class members
***************************************************************************/
void ctobssim::free_members(void)
{
// Return
return;
}
/***********************************************************************//**
* @brief Get application parameters
*
* Get all task parameters from parameter file or (if required) by querying
* the user. Most parameters are only required if no observation exists so
* far in the observation container. In this case, a single CTA observation
* will be added to the container, using the definition provided in the
* parameter file.
***************************************************************************/
void ctobssim::get_parameters(void)
{
// Initialise seed vector
m_rans.clear();
// If there are no observations in container then load them via user
// parameters
if (m_obs.size() == 0) {
// Throw exception if counts cube is given
require_inobs_nocube(G_GET_PARAMETERS);
// Get observation container
m_obs = get_observations();
}
// ... otherwise add response information and energy boundaries in case
// that they are missing
else {
setup_observations(m_obs);
}
// Set observation boundaries
set_obs_bounds();
// Read model definition file if required
if (m_obs.models().size() == 0) {
std::string inmodel = (*this)["inmodel"].filename();
m_obs.models(inmodel);
}
// Get other parameters
m_seed = (*this)["seed"].integer();
m_eslices = (*this)["eslices"].integer();
m_apply_edisp = (*this)["edisp"].boolean();
m_max_rate = (*this)["maxrate"].real();
m_startindex = (*this)["startindex"].integer();
// If needed later, query output filename and prefix now
if (read_ahead()) {
(*this)["outevents"].query();
(*this)["prefix"].query();
}
// Initialise random number generators. We initialise here one random
// number generator per observation so that each observation will
// get it's own random number generator. This will lead to identical
// results independently of code parallelization with OpenMP. The
// seeds for all random number generators are derived randomly but
// fully deterministacally from the seed parameter, so that a given
// seed parameter leads always to the same set of simulated events, and
// this independently of parallelization.
// Get a random number generator for seed determination
GRan master(m_seed);
// Allocate vector of random number generator seeds
std::vector<unsigned long long int> seeds;
// Loop over all observations in the container
for (int i = 0; i < m_obs.size(); ++i) {
// Allocate new seed value
unsigned long long int new_seed;
// Determine new seed value. We make sure that the new seed
// value has not been used already for another observation.
bool repeat = false;
do {
new_seed = (unsigned long long int)(master.uniform() * 1.0e10) +
m_seed;
repeat = false;
for (int j = 0; j < seeds.size(); ++j) {
if (new_seed == seeds[j]) {
repeat = true;
break;
}
}
} while(repeat);
// Add the seed to the vector for bookkeeping
seeds.push_back(new_seed);
// Use the seed to create a random number generator for the
// actual observation
m_rans.push_back(GRan(new_seed));
} // endfor: looped over observations
// Set number of OpenMP threads
#ifdef _OPENMP
int nthreads = (*this)["nthreads"].integer();
if (nthreads > 0) {
omp_set_num_threads(nthreads);
}
#endif
// Write parameters into logger
log_parameters(TERSE);
// Return
return;
}
/***********************************************************************//**
* @brief Simulate source events from photon list
*
* @param[in] obs Pointer on CTA observation.
* @param[in] models Model list.
* @param[in,out] ran Random number generator.
* @param[in] wrklog Pointer to logger.
*
* Simulate source events from a photon list for a given CTA observation and
* all source models. The events are stored in form of an event list in the
* observation.
*
* The method will loop over all Good Time Intervals (GTI) to perform the
* simulations. Within a given GTI the requested energy range is split into
* a number of energy slices so that the simulation area can be adapted to
* the effective area of the instrument (this avoids simulating a large
* number of sources photons at low energies while accepting only few of
* them do to the small effective area). In case that the flux of a source
* is large, the simulation may be done within time slices so that the
* memory requirements won't get too large.
*
* This method does nothing if the observation pointer is NULL. It verifies
* if the observation has a CTA IRF response.
***************************************************************************/
void ctobssim::simulate_source(GCTAObservation* obs,
const GModels& models,
GRan& ran,
GLog* wrklog)
{
// Debug code: signal that we step into the simulate_source method
#if defined(G_SOURCE_DEBUG)
std::cout << "ctobssim::simulate_source: in" << std::endl;
#endif
// Continue only if observation pointer is valid
if (obs != NULL) {
// If no logger is specified then use the default logger
if (wrklog == NULL) {
wrklog = &log;
}
// Get pointer on event list
GCTAEventList* events = static_cast<GCTAEventList*>(obs->events());
// Get CTA response
const GCTAResponseIrf* rsp =
dynamic_cast<const GCTAResponseIrf*>(obs->response());
if (rsp == NULL) {
std::string cls = std::string(typeid(obs->response()).name());
std::string msg = "Response of type \""+cls+"\" is not a CTA "
"IRF response. Please make sure that a CTA "
"IRF response is contained in the CTA "
"observation.";
throw GException::invalid_value(G_SIMULATE_SOURCE, msg);
}
// Extract simulation region from event list ROI
GSkyDir dir = events->roi().centre().dir();
double rad = events->roi().radius() + g_roi_margin;
// Determine energy boundaries for simulation
GEbounds ebounds = get_ebounds(events->ebounds());
// Log simulation cone information
if (logTerse()) {
*wrklog << gammalib::parformat("Simulation cone");
*wrklog << "RA=" << dir.ra_deg() << " deg";
*wrklog << ", Dec=" << dir.dec_deg() << " deg";
*wrklog << ", radius=" << rad << " deg" << std::endl;
}
// Initialise indentation for logging
int indent = 0;
// Initialise photon and event counters
std::vector<int> nphotons(models.size(),0);
std::vector<int> nevents(models.size(),0);
// Loop over all Good Time Intervals
for (int it = 0; it < events->gti().size(); ++it) {
// Extract time interval and time reference
GTime tmin = events->gti().tstart(it);
GTime tmax = events->gti().tstop(it);
GTimeReference tref = events->gti().reference();
// Log time interval. Increment indentation if there are
// several Good Time Intervals.
if (logNormal()) {
if (events->gti().size() > 1) {
indent++;
wrklog->indent(indent);
}
*wrklog << gammalib::parformat("Time interval", indent);
*wrklog << tmin.convert(tref);
*wrklog << " - ";
*wrklog << tmax.convert(tref);
*wrklog << " s" << std::endl;
}
// Loop over all energy boundaries
for (int ie = 0; ie < ebounds.size(); ++ie) {
// Set reconstructed energy interval
GEnergy ereco_min = ebounds.emin(ie);
GEnergy ereco_max = ebounds.emax(ie);
// Set true photon energy limits for simulation. If the
// observation has energy dispersion then add a margin.
GEnergy etrue_min = ereco_min;
GEnergy etrue_max = ereco_max;
if (rsp->use_edisp()) {
etrue_min = rsp->ebounds(etrue_min).emin();
etrue_max = rsp->ebounds(etrue_max).emax();
}
// Determine simulation area
double area = get_area(obs, etrue_min, etrue_max);
// Log energy range and simulation area
if (logNormal()) {
*wrklog << gammalib::parformat("Photon energy range", indent);
*wrklog << etrue_min << " - " << etrue_max << std::endl;
*wrklog << gammalib::parformat("Event energy range", indent);
*wrklog << ereco_min << " - " << ereco_max << std::endl;
}
// Increment indentation if there are several energy
// boundaries
if (logNormal()) {
if (ebounds.size() > 1) {
indent++;
wrklog->indent(indent);
}
}
// Log simulation area
if (logNormal()) {
*wrklog << gammalib::parformat("Simulation area", indent);
*wrklog << area << " cm2" << std::endl;
}
// Save state of event counter before doing the simulation
int nevents_before = events->size();
// Simulate events for this time and energy interval
simulate_interval(obs, rsp, events, models, tmin, tmax,
etrue_min, etrue_max, ereco_min, ereco_max,
dir, rad, area,
ran, wrklog, indent, nphotons, nevents);
// Log simulation results
if (logNormal()) {
*wrklog << gammalib::parformat("MC source events", indent);
*wrklog << events->size() - nevents_before;
*wrklog << " (all source models)";
*wrklog << std::endl;
}
// Reset indentation if there were several energy boundaries
if (logNormal()) {
if (ebounds.size() > 1) {
indent--;
wrklog->indent(indent);
}
}
} // endfor: looped over all energy boundaries
// Reset indentation if there were several Good Time Intervals
if (logNormal()) {
if (events->gti().size() > 1) {
indent--;
wrklog->indent(indent);
}
}
} // endfor: looped over all time intervals
// Reset indentation
wrklog->indent(0);
// Log simulation summary
if (logTerse()) {
for (int i = 0; i < models.size(); ++i) {
const GModelSky* model = dynamic_cast<const GModelSky*>(models[i]);
if (model == NULL) {
continue;
}
if (!model->is_valid(obs->instrument(), obs->id())) {
continue;
}
*wrklog << gammalib::parformat("MC source photons");
*wrklog << nphotons[i];
if (model->name().length() > 0) {
*wrklog << " [" << model->name() << "]";
}
*wrklog << std::endl;
*wrklog << gammalib::parformat("MC source events");
*wrklog << nevents[i];
if (model->name().length() > 0) {
*wrklog << " [" << model->name() << "]";
}
*wrklog << std::endl;
}
}
} // endif: observation pointer was valid
// Debug code: signal that we are down with the simulate_source method
#if defined(G_SOURCE_DEBUG)
std::cout << "ctobssim::simulate_source: out" << std::endl;
#endif
// Return
return;
}
/***********************************************************************//**
* @brief Simulate source events for a time and energy interval
*
* @param[in] obs Pointer on CTA observation.
* @param[in] rsp Pointer on CTA IRF response.
* @param[in,out] events Pointer on CTA event list.
* @param[in] models Model list.
* @param[in] tmin Start time.
* @param[in] tmax Stop time.
* @param[in] etrue_min Minimum true energy.
* @param[in] etrue_max Maximum true energy.
* @param[in] ereco_min Minimum reconstructed energy.
* @param[in] ereco_max Maximum reconstructed energy.
* @param[in] dir Simulation cone centre.
* @param[in] rad Simulation cone radius (degrees).
* @param[in] area Simulation area (cm^2).
* @param[in,out] ran Random number generator.
* @param[in] wrklog Pointer to logger.
* @param[in,out] indent Logger indent.
* @param[in,out] nphotons Number of photons for all models.
* @param[in,out] nevents Number of events for all models.
*
* Simulate source events for a time and energy interval.
***************************************************************************/
void ctobssim::simulate_interval(GCTAObservation* obs,
const GCTAResponseIrf* rsp,
GCTAEventList* events,
const GModels& models,
const GTime& tmin,
const GTime& tmax,
const GEnergy& etrue_min,
const GEnergy& etrue_max,
const GEnergy& ereco_min,
const GEnergy& ereco_max,
const GSkyDir& dir,
const double& rad,
const double& area,
GRan& ran,
GLog* wrklog,
int& indent,
std::vector<int>& nphotons,
std::vector<int>& nevents)
{
// Debug code: signal that we step into the simulate_interval method
#if defined(G_SOURCE_DEBUG)
std::cout << "ctobssim::simulate_interval: in";
std::cout << " Etrue=[" << etrue_min << "," << etrue_max << "]";
std::cout << " Ereco=[" << ereco_min << "," << ereco_max << "]";
std::cout << std::endl;
#endif
// Loop over all models
for (int i = 0; i < models.size(); ++i) {
// Get sky model (NULL if not a sky model)
const GModelSky* model = dynamic_cast<const GModelSky*>(models[i]);
// If the model is not a sky model then skip the model
if (model == NULL) {
continue;
}
// If the model does not apply to the instrument and observation
// identifier then skip the model
if (!model->is_valid(obs->instrument(), obs->id())) {
continue;
}
// Determine duration of a time slice by limiting the number of
// simulated photons to m_max_photons. The photon rate is estimated
// from the model flux and used to set the duration of the time
// slice.
double flux = get_model_flux(model, etrue_min, etrue_max, dir, rad,
indent, wrklog);
double rate = flux * area;
double duration = 1800.0; // default: 1800 sec
if (rate > 0.0) {
duration = m_max_photons / rate;
if (duration < 1.0) { // not <1 sec
duration = 1.0;
}
else if (duration > 180000.0) { // not >50 hr
duration = 180000.0;
}
}
// Skip model if photon rate is 0
if (rate <= 0.0) {
continue;
}
// Log photon rate
if (logNormal()) {
*wrklog << gammalib::parformat("Photon rate", indent);
*wrklog << rate << " photons/s";
if (model->name().length() > 0) {
*wrklog << " [" << model->name() << "]";
}
*wrklog << std::endl;
}
// If photon rate exceeds the maximum photon rate that is allowed
// then throw an exception
if (rate > m_max_rate) {
std::string mod = (model->name().length() > 0) ?
model->name() : "Unknown";
std::string msg = "Photon rate "+gammalib::str(rate)+
" photons/s for model \""+mod+"\" exceeds "
"maximum allowed photon rate of "+
gammalib::str(m_max_rate)+" photons/s. "
"Please check the parameters of model "
"\""+mod+"\" or increase the value of the "
"\"maxrate\" parameter.";
throw GException::invalid_value(G_SIMULATE_INTERVAL, msg);
}
// To reduce memory requirements we split long time intervals into
// several time slices
GTime tstart = tmin;
GTime tstop = tstart + duration;
// Save state of photon and event counters before doing the
// simulation
int nphotons_before = nphotons[i];
int nevents_before = nevents[i];
// Loop over time slices
while (tstart < tmax) {
// Make sure that tstop <= tmax
if (tstop > tmax) {
tstop = tmax;
}
// Log time slice
if (logExplicit()) {
if (tmax - tmin > duration) {
indent++;
wrklog->indent(indent);
}
*wrklog << gammalib::parformat("Time slice", indent);
*wrklog << tstart.convert(obs->gti().reference()) << " - ";
*wrklog << tstop.convert(obs->gti().reference()) << " s";
if (model->name().length() > 0) {
*wrklog << " [" << model->name() << "]";
}
*wrklog << std::endl;
}
// Simulate time slice
simulate_time_slice(obs, rsp, events, model, i+1, tstart, tstop,
etrue_min, etrue_max, ereco_min, ereco_max,
dir, rad, area,
ran, wrklog, indent,
nphotons[i], nevents[i]);
// Go to next time slice
tstart = tstop;
tstop = tstart + duration;
// Reset indentation
if (logExplicit()) {
if (tmax - tmin > duration) {
indent--;
wrklog->indent(indent);
}
}
} // endwhile: looped over time slices
// Log simulation results
if (logNormal()) {
*wrklog << gammalib::parformat("MC source photons", indent);
*wrklog << nphotons[i] - nphotons_before;
if (model->name().length() > 0) {
*wrklog << " [" << model->name() << "]";
}
*wrklog << std::endl;
*wrklog << gammalib::parformat("MC source events", indent);
*wrklog << nevents[i] - nevents_before;
if (model->name().length() > 0) {
*wrklog << " [" << model->name() << "]";
}
*wrklog << std::endl;
}
} // endfor: looped over models
// Debug code: signal that we are down with the simulate_interval method
#if defined(G_SOURCE_DEBUG)
std::cout << "ctobssim::simulate_interval: out" << std::endl;
#endif
// Return
return;
}
/***********************************************************************//**
* @brief Simulate source events for a time slice
*
* @param[in] obs Pointer on CTA observation.
* @param[in] rsp Pointer on CTA response.
* @param[in,out] events Pointer on CTA event list.
* @param[in] model Model.
* @param[in] mc_id Monte Carlo identifier of model.
* @param[in] tstart Start time.
* @param[in] tstop Stop time.
* @param[in] etrue_min Minimum true energy.
* @param[in] etrue_max Maximum true energy.
* @param[in] ereco_min Minimum reconstructed energy.
* @param[in] ereco_max Maximum reconstructed energy.
* @param[in] dir Simulation cone centre.
* @param[in] rad Simulation cone radius (degrees).
* @param[in] area Simulation area (cm^2).
* @param[in,out] ran Random number generator.
* @param[in] wrklog Pointer to logger.
* @param[in,out] indent Logger indent.
* @param[in,out] nphotons Number of photons.
* @param[in,out] nevents Number of events.
*
* Simulate source events for a time slice.
***************************************************************************/
void ctobssim::simulate_time_slice(GCTAObservation* obs,
const GCTAResponseIrf* rsp,
GCTAEventList* events,
const GModelSky* model,
const int& mc_id,
const GTime& tstart,
const GTime& tstop,
const GEnergy& etrue_min,
const GEnergy& etrue_max,
const GEnergy& ereco_min,
const GEnergy& ereco_max,
const GSkyDir& dir,
const double& rad,
const double& area,
GRan& ran,
GLog* wrklog,
int& indent,
int& nphotons,
int& nevents)
{
// Debug code: signal that we step into the model MC method
#if defined(G_SOURCE_DEBUG)
std::cout << "ctobssim::simulate_time_slice: model->mc in" << std::endl;
#endif
// Get photons
GPhotons photons = model->mc(area, dir, rad, etrue_min, etrue_max,
tstart, tstop, ran);
// Debug code: signal that we came back
#if defined(G_SOURCE_DEBUG)
std::cout << "ctobssim::simulate_time_slice: model->mc out" << std::endl;
#endif
// Dump number of simulated photons
if (logExplicit()) {
*wrklog << gammalib::parformat("MC source photons/slice", indent);
*wrklog << photons.size();
if (model->name().length() > 0) {
*wrklog << " [" << model->name() << "]";
}
*wrklog << std::endl;
}
// Simulate events from photons
for (int i = 0; i < photons.size(); ++i) {
// Increment photon counter
nphotons++;
// Debug code: signal that we step into the response MC method
#if defined(G_SOURCE_DEBUG)
std::cout << "ctobssim::simulate_time_slice: rsp->mc in" << std::endl;
#endif
// Simulate event. Note that this method includes the deadtime
// correction.
GCTAEventAtom* event = rsp->mc(area, photons[i], *obs, ran);
// Debug code: signal that we came back
#if defined(G_SOURCE_DEBUG)
std::cout << "ctobssim::simulate_time_slice: rsp->mc out" << std::endl;
#endif
// Use event only if it exists and if it falls within ROI, the
// reconstructed energy interval and the time slice
if (event != NULL) {
if (events->roi().contains(*event) &&
event->energy() >= ereco_min &&
event->energy() <= ereco_max &&
event->time() >= tstart &&
event->time() <= tstop) {
// Set event identifier
event->event_id(m_event_id);
// Set Monte Carlo identifier
event->mc_id(mc_id);
// Append event
events->append(*event);
// Increment counters
m_event_id++;
nevents++;
}
delete event;
}
} // endfor: looped over events
// Signal that event list contains Monte Carlo identifiers
events->has_mc_id(true);
// Return
return;
}
/***********************************************************************//**
* @brief Get energy boundaries
*
* @param[in] ebounds Energy boundaries of events.
* @return Energy boundaries for simulation.
*
* Get the energy boundaries for the source simulation.
*
* @todo Need to take care of the (rare) case that there are distinct
* energy boundaries in the event list. In that case we need to
* create mixed energy boundaries.
***************************************************************************/
GEbounds ctobssim::get_ebounds(const GEbounds& ebounds) const
{
// Set energy bins
GEbounds ebins(m_eslices, ebounds.emin(), ebounds.emax());
// Return energy bins
return (ebins);
}
/***********************************************************************//**
* @brief Get simulation area (cm^2)
*
* @param[in] obs Pointer on CTA observation.
* @param[in] emin Minimum true energy.
* @param[in] emax Maximum true energy.
* @return Simulation area (cm^2).
*
* Get the simulation area for an energy interval in units of cm^2. This is
* done by extracting the maximum effective area value within the energy
* range [emin,emax] and by multiplying this value by 2 for security. The
* effective area is sampled at 100 energy values within the energy interval.
***************************************************************************/
double ctobssim::get_area(GCTAObservation* obs,
const GEnergy& emin,
const GEnergy& emax) const
{
// Get CTA response
const GCTAResponseIrf* rsp =
dynamic_cast<const GCTAResponseIrf*>(obs->response());
if (rsp == NULL) {
std::string cls = std::string(typeid(rsp).name());
std::string msg = "Response of type \""+cls+"\" is not a CTA IRF "
"response. Please make sure that a CTA IRF "
"response is contained in the CTA observation.";
throw GException::invalid_value(G_GET_AREA, msg);
}
// Compute effective area at minimum and maximum energy
const int nbins = 10;
double logE = emin.log10TeV();
double logEbin = (emax.log10TeV() - logE)/double(nbins-1);
double area = 0.0;
for (int i = 0; i < nbins; ++i, logE += logEbin) {
double aeff = rsp->aeff()->max(logE, 0.0, 0.0);
if (aeff > area) {
area = aeff;
}
}
// Multiply by security factor
area *= 2.0;
// Return simulation area
return area;
}
/***********************************************************************//**
* @brief Determine sky model flux
*
* @param[in] model Sky model.
* @param[in] emin Minimum energy.
* @param[in] emax Maximum energy.
* @param[in] centre Centre of region for photon rate determination.
* @param[in] radius Radius of region for photon rate determination (degrees).
* @param[in] indent Indent for logging.
* @param[in,out] wrklog Pointer to logger.
* @return Model flux (photons/cm2/sec).
***************************************************************************/
double ctobssim::get_model_flux(const GModelSky* model,
const GEnergy& emin,
const GEnergy& emax,
const GSkyDir& centre,
const double& radius,
const int& indent,
GLog* wrklog)
{
// Debug code: signal that we step into the get_model_flux method
#if defined(G_SOURCE_DEBUG)
std::cout << "ctobssim::get_model_flux: in";
std::cout << " Etrue=[" << emin << "," << emax << "]";
std::cout << std::endl;
#endif
// Initialise flux
double flux = 0.0;
// Determine the spatial model normalization within the simulation
// cone and check whether the model will produce any photons in that
// cone.
double norm = model->spatial()->mc_norm(centre, radius);
bool use_model = (norm > 0.0) ? true : false;
if (logNormal()) {
if (use_model) {
*wrklog << gammalib::parformat("Use model", indent);
}
else {
*wrklog << gammalib::parformat("Skip model", indent);
}
if (model->name().length() > 0) {
*wrklog << model->name();
}
*wrklog << std::endl;
*wrklog << gammalib::parformat("Normalization", indent);
*wrklog << norm;
if (model->name().length() > 0) {
*wrklog << " [" << model->name() << "]";
}
*wrklog << std::endl;
}
// Continue only if model overlaps with simulation region
if (use_model) {
// Initialise de-allocation flag
bool free_spectral = false;
// Get pointer to spectral model
const GModelSpectral* spectral = model->spectral();
// If the spatial model is a diffuse cube then create a node
// function spectral model that is the product of the diffuse
// cube node function and the spectral model evaluated at the
// energies of the node function
GModelSpatialDiffuseCube* cube =
dynamic_cast<GModelSpatialDiffuseCube*>(model->spatial());
if (cube != NULL) {
// Set MC cone
cube->set_mc_cone(centre, radius);
// Allocate node function to replace the spectral component
GModelSpectralNodes* nodes =
new GModelSpectralNodes(cube->spectrum());
for (int i = 0; i < nodes->nodes(); ++i) {
GEnergy energy = nodes->energy(i);
double intensity = nodes->intensity(i);
double value = spectral->eval(energy);
nodes->intensity(i, value * intensity);
}
// Signal that node function needs to be de-allocated later
free_spectral = true;
// Set the spectral model pointer to the node function
spectral = nodes;
// Kluge: if there are no nodes then the spectral->flux method
// will throw an exception. We therefore set here the use_model
// flag to false in case that there are no spectral nodes
if (nodes->nodes() == 0) {
use_model = false;
}
} // endif: spatial model was a diffuse cube
// Compute flux within [emin, emax] in model from spectral
// component (units: ph/cm2/s)
double flux0 = (use_model) ? spectral->flux(emin, emax) : 0.0;
flux = flux0 * norm;
// Dump flux
if (logNormal()) {
*wrklog << gammalib::parformat("Flux", indent);
*wrklog << flux0;
if (model->name().length() > 0) {
*wrklog << " [" << model->name() << "]";
}
*wrklog << " photons/cm2/s" << std::endl;
*wrklog << gammalib::parformat("Normalized flux", indent);
*wrklog << flux;
if (model->name().length() > 0) {
*wrklog << " [" << model->name() << "]";
}
*wrklog << " photons/cm2/s" << std::endl;
}
// Free spectral model if required
if (free_spectral) delete spectral;
} // endif: model overlaps with simulation region
// Debug code: signal that we step out of the get_model_flux method
#if defined(G_SOURCE_DEBUG)
std::cout << "ctobssim::get_model_flux: out" << std::endl;
#endif
// Return model flux
return flux;
}
/***********************************************************************//**
* @brief Simulate background events from model
*
* @param[in] obs Pointer on CTA observation.
* @param[in] models Models.
* @param[in] ran Random number generator.
* @param[in] wrklog Pointer to logger.
*
* Simulate background events from models. The events are stored as event
* list in the observation.
*
* This method does nothing if the observation pointer is NULL.
***************************************************************************/
void ctobssim::simulate_background(GCTAObservation* obs,
const GModels& models,
GRan& ran,
GLog* wrklog)
{
// Continue only if observation pointer is valid
if (obs != NULL) {
// If no logger is specified then use the default logger
if (wrklog == NULL) {
wrklog = &log;
}
// Get pointer on event list (circumvent const correctness)
GCTAEventList* events =
static_cast<GCTAEventList*>(const_cast<GEvents*>(obs->events()));
// Loop over all models
for (int i = 0; i < models.size(); ++i) {
// Get data model (NULL if not a data model)
const GModelData* model =
dynamic_cast<const GModelData*>(models[i]);
// If we have a data model that applies to the present observation
// then simulate events
if (model != NULL &&
model->is_valid(obs->instrument(), obs->id())) {
// Debug code: signal that we step into the response MC method
#if defined(G_BACKGROUND_DEBUG)
std::cout << "ctobssim::simulate_background: model->mc in"
<< std::endl;
#endif
// Get simulated CTA event list
GCTAEventList* list =
dynamic_cast<GCTAEventList*>(model->mc(*obs, ran));
// Debug code: signal that we came back
#if defined(G_BACKGROUND_DEBUG)
std::cout << "ctobssim::simulate_background: model->mc out"
<< std::endl;
#endif
// Continue only if we got a CTA event list
if (list != NULL) {
// Reserves space for events
events->reserve(list->size()+events->size());
// Initialise statistics
int n_appended = 0;
int n_outside_roi = 0;
// Append events
for (int k = 0; k < list->size(); k++) {
// Get event pointer
GCTAEventAtom* event = (*list)[k];
// Use event only if it falls within ROI
if (events->roi().contains(*event)) {
// Set event identifier
event->event_id(m_event_id);
m_event_id++;
// Set Monte Carlo identifier
event->mc_id(i+1);
// Append event
events->append(*event);
// Increment number of appended events
n_appended++;
} // endif: event was within ROI
// ... otherwise increment outside ROI counter
else {
n_outside_roi++;
}
} // endfor: looped over all events
// Dump simulation results
if (logNormal()) {
*wrklog << gammalib::parformat("MC events outside ROI");
*wrklog << n_outside_roi << std::endl;
*wrklog << gammalib::parformat("MC background events");
*wrklog << n_appended << std::endl;
}
// Free event list
delete list;
} // endif: we had a CTA event list
} // endif: model was valid
} // endfor: looped over all models
// Signal that event list contains Monte Carlo identifiers
events->has_mc_id(true);
} // endif: observation pointer was valid
// Return
return;
}
/***********************************************************************//**
* @brief Set correspondance between Monte Carlo identifier and model names
*
* @param[in] obs Pointer on CTA observation.
* @param[in] models Models.
* @param[in] wrklog Pointer to logger.
*
* Sets the correspondance between Monte Carlo identifier and model names.
* The method collects all Monte Carlo identifiers from the event list and
* sets the corresponding source names using the
* GCTAEventList::set_mc_id_names method.
***************************************************************************/
void ctobssim::set_mc_id_names(GCTAObservation* obs,
const GModels& models,
GLog* wrklog)
{
// Continue only if observation pointer is valid
if (obs != NULL) {
// If no logger is specified then use the default logger
if (wrklog == NULL) {
wrklog = &log;
}
// Get pointer on event list (circumvent const correctness)
GCTAEventList* events =
static_cast<GCTAEventList*>(const_cast<GEvents*>(obs->events()));
// Initialise lists
std::vector<int> ids;
std::vector<std::string> names;
// Collect all Monte Carlo identifiers
for (int i = 0; i < events->size(); ++i) {
// Get Monte Carlo identifier for event
int id = (*events)[i]->mc_id();
// If this is the first event then push the Monte Carlo
// identifier into list ...
if (i == 0) {
ids.push_back(id);
names.push_back(models[id-1]->name());
}
// ... otherwise push the Monte Carlo identifier only into list
// if the ID does not yet exist
else {
bool id_found = false;
for (int k = 0; k < ids.size(); ++k) {
if (ids[k] == id) {
id_found = true;
break;
}
}
if (!id_found) {
ids.push_back(id);
names.push_back(models[id-1]->name());
}
}
} // endfor: collected all Monte Carlo identifiers
// Set correspondance for the event list
if ((ids.size() > 0) && (names.size() > 0)) {
// Set Monte Carlo identifiers for event list
events->set_mc_id_names(ids, names);
// Log Monte Carlo identifiers into log file
if (logNormal()) {
for (int k = 0; k < ids.size(); ++k) {
*wrklog << gammalib::parformat("MC identifier " +
gammalib::str(ids[k]));
*wrklog << names[k] << std::endl;
}
}
} // endif: there were Monte Carlo identifiers
} // endif: observation pointer was valid
// Return
return;
}
/***********************************************************************//**
* @brief Save event list in FITS format.
*
* Save the event list as a FITS file. The filename of the FITS file is
* specified by the outfile parameter.
***************************************************************************/
void ctobssim::save_fits(void)
{
// Save only if event list has not yet been saved and disposed and if
// there are observations
if (!m_save_and_dispose && m_obs.size() > 0) {
// Get output filename
m_outevents = (*this)["outevents"].filename();
// Get CTA observation from observation container
GCTAObservation* obs = dynamic_cast<GCTAObservation*>(m_obs[0]);
// Log filename
log_value(NORMAL, "Event list file", m_outevents);
// Save observation into FITS file
obs->save(m_outevents, clobber());
} // endif: event list has not yet been saved and disposed
// Return
return;
}
/***********************************************************************//**
* @brief Save event list(s) in XML format.
*
* Save the event list(s) into FITS files and write the file path information
* into a XML file. The filename of the XML file is specified by the outfile
* parameter, the filename(s) of the event lists are built by prepending a
* prefix to the input event list filenames. Any path present in the input
* filename will be stripped, i.e. the event list(s) will be written in the
* local working directory (unless a path is specified in the prefix).
***************************************************************************/
void ctobssim::save_xml(void)
{
// Get output filename, prefix and start index
m_outevents = (*this)["outevents"].filename();
// Issue warning if output filename has no .xml suffix
log_string(TERSE, warn_xml_suffix(m_outevents));
// Save only if event lists have not yet been saved and disposed
if (!m_save_and_dispose) {
// Loop over all observation in the container
for (int i = 0; i < m_obs.size(); ++i) {
// Get CTA observation
GCTAObservation* obs = dynamic_cast<GCTAObservation*>(m_obs[i]);
// Handle only CTA observations
if (obs != NULL) {
// Continue only if there is an event list (it may have been disposed)
if (obs->events()->size() != 0) {
// Set event output file name
std::string outfile = this->outfile(i);
// Store output file name in observation
obs->eventfile(outfile);
// Log filename
log_value(NORMAL, "Event list file", outfile);
// Save observation into FITS file
obs->save(outfile, clobber());
}
} // endif: observation was a CTA observations
} // endfor: looped over observations
} // endif: event list has not yet been saved and disposed
// Save observations in XML file
m_obs.save(m_outevents);
// Return
return;
}
/***********************************************************************//**
* @brief Return output filename
*
* @param[in] index Observation index
* @return Output filename
*
* Return output filename for observation with @p index.
***************************************************************************/
std::string ctobssim::outfile(const int& index)
{
// Initialise output filename
std::string outfile;
// If multiple observations are handled then build the filename from
// prefix and observation index plus startindex. The format is
// [prefix]NNNNNN.fits, where NNNNNN is a 6-digit integer
if (m_use_xml) {
// Get prefix and start index
m_prefix = (*this)["prefix"].string();
m_startindex = (*this)["startindex"].integer();
// Build filename
char buffer[256];
std::sprintf(buffer, "%s%6.6d.fits", m_prefix.c_str(),
index + m_startindex);
// Set output filename
outfile = std::string(buffer);
}
// ... otherwise use the outfile parameter
else {
// Get output event list file name
m_outevents = (*this)["outevents"].filename();
// Set output filename
outfile = std::string(m_outevents);
}
// Return
return outfile;
}