Iftach Sadeh / ctools

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Commit 155cf0c2bbb3f37e3152bce020289dd2d864d2f7

Authored by Simon Bonnefoy 2018-11-05 16:46:15 +0100

Committed by Jürgen Knödlseder 2018-12-10 11:26:51 +0100

1 parent f418ba9a

creation of the new time variability tool

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Showing 8 changed files with 797 additions and 0 deletions

doc/source/users/reference_manual/ctfindvar.rst 0 → 100644

View file @155cf0c

	1	+.. _ctfindvar:
	2	+
	3	+ctfindvar
	4	+==============================
	5	+
	6	+ToDo: Describe in a one liner what the tool is doing.
	7	+
	8	+
	9	+Synopsis
	10	+--------
	11	+
	12	+ToDo: Desribe in detail what the tool is doing, what it takes on input and
	13	+what it produces on output. Please do not write more than 80 characters per
	14	+line since this file is also used to produce a help text for the terminal.
	15	+
	16	+
	17	+General parameters
	18	+------------------
	19	+
	20	+ToDo: Add here your parameters.
	21	+
	22	+
	23	+Standard parameters
	24	+-------------------
	25	+
	26	+``(chatter = 2) [integer]``
	27	+ Verbosity of the executable:
	28	+ ``chatter = 0``: no information will be logged
	29	+
	30	+ ``chatter = 1``: only errors will be logged
	31	+
	32	+ ``chatter = 2``: errors and actions will be logged
	33	+
	34	+ ``chatter = 3``: report about the task execution
	35	+
	36	+ ``chatter = 4``: detailed report about the task execution
	37	+
	38	+``(clobber = yes) [boolean]``
	39	+ Specifies whether an existing output file should be overwritten.
	40	+
	41	+``(debug = no) [boolean]``
	42	+ Enables debug mode. In debug mode the executable will dump any log file output to the console.
	43	+
	44	+``(mode = ql) [string]``
	45	+ Mode of automatic parameters (default is ``ql``, i.e. "query and learn").
	46	+
	47	+``(logfile = ctfindvar.log) [string]``
	48	+ Name of log file.
	49	+
	50	+
	51	+Related tools or scripts
	52	+------------------------
	53	+
	54	+None
...	...

pyext/ctfindvar.i 0 → 100644

View file @155cf0c

	1	+/***************************************************************************
	2	+ * ctfindvar - search time variability tool *
	3	+ * ----------------------------------------------------------------------- *
	4	+ * copyright (C) 2018 by Simon Bonnefoy *
	5	+ * ----------------------------------------------------------------------- *
	6	+ * *
	7	+ * This program is free software: you can redistribute it and/or modify *
	8	+ * it under the terms of the GNU General Public License as published by *
	9	+ * the Free Software Foundation, either version 3 of the License, or *
	10	+ * (at your option) any later version. *
	11	+ * *
	12	+ * This program is distributed in the hope that it will be useful, *
	13	+ * but WITHOUT ANY WARRANTY; without even the implied warranty of *
	14	+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the *
	15	+ * GNU General Public License for more details. *
	16	+ * *
	17	+ * You should have received a copy of the GNU General Public License *
	18	+ * along with this program. If not, see <http://www.gnu.org/licenses/>. *
	19	+ * *
	20	+ ***************************************************************************/
	21	+/**
	22	+ * @file ctfindvar.i
	23	+ * @brief search time variability tool definition
	24	+ * @author Simon Bonnefoy
	25	+ */
	26	+%{
	27	+/* Put headers and other declarations here that are needed for compilation */
	28	+#include "ctfindvar.hpp"
	29	+%}
	30	+
	31	+
	32	+/*********************************************************************//
	33	+ * @class ctfindvar
	34	+ *
	35	+ * @brief search time variability tool
	36	+ ***************************************************************************/
	37	+class ctfindvar : public ctobservation {
	38	+public:
	39	+ // Constructors and destructors
	40	+ ctfindvar(void);
	41	+ explicit ctfindvar(const GObservations& obs);
	42	+ ctfindvar(int argc, char *argv[]);
	43	+ ctfindvar(const ctfindvar& app);
	44	+ virtual ~ctfindvar(void);
	45	+
	46	+ // Methods
	47	+ void clear(void);
	48	+ void run(void);
	49	+ void save(void);
	50	+};
	51	+
	52	+
	53	+/*********************************************************************//
	54	+ * @brief search time variability tool Python extension
	55	+ ***************************************************************************/
	56	+%extend ctfindvar {
	57	+ ctfindvar copy() {
	58	+ return (*self);
	59	+ }
	60	+}
...	...

src/ctfindvar/Makefile.am 0 → 100644

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	1	+#############################################################################
	2	+# Makefile.am for ctfindvar tool #
	3	+# ------------------------------------------------------------------------- #
	4	+# Copyright (C) 2018 by Simon Bonnefoy #
	5	+# ------------------------------------------------------------------------- #
	6	+# #
	7	+# This program is free software: you can redistribute it and/or modify #
	8	+# it under the terms of the GNU General Public License as published by #
	9	+# the Free Software Foundation, either version 3 of the License, or #
	10	+# (at your option) any later version. #
	11	+# #
	12	+# This program is distributed in the hope that it will be useful, #
	13	+# but WITHOUT ANY WARRANTY; without even the implied warranty of #
	14	+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the #
	15	+# GNU General Public License for more details. #
	16	+# #
	17	+# You should have received a copy of the GNU General Public License #
	18	+# along with this program. If not, see <http://www.gnu.org/licenses/>. #
	19	+# #
	20	+#############################################################################
	21	+
	22	+# Set include directories
	23	+INCLUDES = -I$(top_srcdir)/src/support
	24	+
	25	+# Program name
	26	+bin_PROGRAMS = ctfindvar
	27	+
	28	+# Sources
	29	+sources = ctfindvar.cpp ctfindvar.hpp
	30	+
	31	+# Headers
	32	+pkginclude_HEADERS = ctfindvar.hpp
	33	+
	34	+# Libtool library
	35	+noinst_LTLIBRARIES = libctfindvar.la
	36	+libctfindvar_la_SOURCES = $(sources)
	37	+libctfindvar_la_LDFLAGS = @OPENMP_LIB_LDFLAGS@
	38	+
	39	+# Program definition
	40	+ctfindvar_SOURCES = main.cpp
	41	+ctfindvar_LDFLAGS = $(LIB_LINK_OPTION) @LDFLAGS@
	42	+ctfindvar_CPPFLAGS = @CPPFLAGS@
	43	+ctfindvar_LDADD = libctfindvar.la $(top_builddir)/src/support/libsupport.la
	44	+
	45	+# Parameter files
	46	+pfilesdir = $(prefix)/syspfiles
	47	+pfiles_DATA = $(srcdir)/ctfindvar.par
	48	+
	49	+# Extra files to be distributed in the tar file
	50	+EXTRA_DIST = $(pfiles_DATA)
...	...

src/ctfindvar/ctfindvar.cpp 0 → 100644

View file @155cf0c

	1	+/***************************************************************************
	2	+ * ctfindvar - search time variability tool *
	3	+ * ----------------------------------------------------------------------- *
	4	+ * copyright (C) 2018 by Simon Bonnefoy *
	5	+ * ----------------------------------------------------------------------- *
	6	+ * *
	7	+ * This program is free software: you can redistribute it and/or modify *
	8	+ * it under the terms of the GNU General Public License as published by *
	9	+ * the Free Software Foundation, either version 3 of the License, or *
	10	+ * (at your option) any later version. *
	11	+ * *
	12	+ * This program is distributed in the hope that it will be useful, *
	13	+ * but WITHOUT ANY WARRANTY; without even the implied warranty of *
	14	+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the *
	15	+ * GNU General Public License for more details. *
	16	+ * *
	17	+ * You should have received a copy of the GNU General Public License *
	18	+ * along with this program. If not, see <http://www.gnu.org/licenses/>. *
	19	+ * *
	20	+ ***************************************************************************/
	21	+/**
	22	+ * @file ctfindvar.cpp
	23	+ * @brief search time variability tool implementation
	24	+ * @author Simon Bonnefoy
	25	+ */
	26	+
	27	+/* __ Includes ___________________________________________________________ */
	28	+#ifdef HAVE_CONFIG_H
	29	+#include <config.h>
	30	+#endif
	31	+#include "ctfindvar.hpp"
	32	+#include "GammaLib.hpp"
	33	+#include "GCTALib.hpp"
	34	+
	35	+/* __ OpenMP section _____________________________________________________ */
	36	+//#ifdef _OPENMP
	37	+//#include <omp.h>
	38	+//#endif
	39	+
	40	+/* __ Method name definitions ____________________________________________ */
	41	+
	42	+/* __ Debug definitions __________________________________________________ */
	43	+
	44	+/* __ Coding definitions _________________________________________________ */
	45	+
	46	+/* __ Constants __________________________________________________________ */
	47	+
	48	+
	49	+/*==========================================================================
	50	+ = =
	51	+ = Constructors/destructors =
	52	+ = =
	53	+ ==========================================================================*/
	54	+
	55	+/*********************************************************************//
	56	+ * @brief Void constructor
	57	+ *
	58	+ * Constructs empty search time variability tool.
	59	+ ***************************************************************************/
	60	+ctfindvar::ctfindvar(void) : ctobservation(CTFINDVAR_NAME, VERSION)
	61	+{
	62	+ // Initialise members
	63	+ init_members();
	64	+
	65	+ // Return
	66	+ return;
	67	+}
	68	+
	69	+
	70	+/*********************************************************************//
	71	+ * @brief Observations constructor
	72	+ *
	73	+ * param[in] obs Observation container.
	74	+ *
	75	+ * Constructs search time variability tool from an observation container.
	76	+ ***************************************************************************/
	77	+ctfindvar::ctfindvar(const GObservations& obs) : ctobservation(CTFINDVAR_NAME, VERSION, obs)
	78	+{
	79	+ // Initialise members
	80	+ init_members();
	81	+
	82	+ // Return
	83	+ return;
	84	+}
	85	+
	86	+
	87	+/*********************************************************************//
	88	+ * @brief Command line constructor
	89	+ *
	90	+ * @param[in] argc Number of arguments in command line.
	91	+ * @param[in] argv Array of command line arguments.
	92	+ *
	93	+ * Constructs search time variability tool using command line arguments for user
	94	+ * parameter setting.
	95	+ ***************************************************************************/
	96	+ctfindvar::ctfindvar(int argc, char *argv[]) : ctobservation(CTFINDVAR_NAME, VERSION, argc, argv)
	97	+{
	98	+ // Initialise members
	99	+ init_members();
	100	+
	101	+ // Return
	102	+ return;
	103	+}
	104	+
	105	+
	106	+/*********************************************************************//
	107	+ * @brief Copy constructor
	108	+ *
	109	+ * @param[in] app search time variability tool.
	110	+ *
	111	+ * Constructs search time variability tool from another search time variability tool.
	112	+ ***************************************************************************/
	113	+ctfindvar::ctfindvar(const ctfindvar& app) : ctobservation(app)
	114	+{
	115	+ // Initialise members
	116	+ init_members();
	117	+
	118	+ // Copy members
	119	+ copy_members(app);
	120	+
	121	+ // Return
	122	+ return;
	123	+}
	124	+
	125	+
	126	+/*********************************************************************//
	127	+ * @brief Destructor
	128	+ *
	129	+ * Destructs search time variability tool.
	130	+ ***************************************************************************/
	131	+ctfindvar::~ctfindvar(void)
	132	+{
	133	+ // Free members
	134	+ free_members();
	135	+
	136	+ // Return
	137	+ return;
	138	+}
	139	+
	140	+
	141	+/*==========================================================================
	142	+ = =
	143	+ = Operators =
	144	+ = =
	145	+ ==========================================================================*/
	146	+
	147	+/*********************************************************************//
	148	+ * @brief Assignment operator
	149	+ *
	150	+ * @param[in] app search time variability tool.
	151	+ * @return search time variability tool.
	152	+ *
	153	+ * Assigns search time variability tool.
	154	+ ***************************************************************************/
	155	+ctfindvar& ctfindvar::operator=(const ctfindvar& app)
	156	+{
	157	+ // Execute only if object is not identical
	158	+ if (this != &app) {
	159	+
	160	+ // Copy base class members
	161	+ this->ctobservation::operator=(app);
	162	+
	163	+ // Free members
	164	+ free_members();
	165	+
	166	+ // Initialise members
	167	+ init_members();
	168	+
	169	+ // Copy members
	170	+ copy_members(app);
	171	+
	172	+ } // endif: object was not identical
	173	+
	174	+ // Return this object
	175	+ return *this;
	176	+}
	177	+
	178	+
	179	+/*==========================================================================
	180	+ = =
	181	+ = Public methods =
	182	+ = =
	183	+ ==========================================================================*/
	184	+
	185	+/*********************************************************************//
	186	+ * @brief Clear search time variability tool
	187	+ *
	188	+ * Clears search time variability tool.
	189	+ ***************************************************************************/
	190	+void ctfindvar::clear(void)
	191	+{
	192	+ // Free members
	193	+ free_members();
	194	+ this->ctobservation::free_members();
	195	+ this->ctool::free_members();
	196	+
	197	+ // Clear base class (needed to conserve tool name and version)
	198	+ this->GApplication::clear();
	199	+
	200	+ // Initialise members
	201	+ this->ctool::init_members();
	202	+ this->ctobservation::init_members();
	203	+ init_members();
	204	+
	205	+ // Write header into logger
	206	+ log_header();
	207	+
	208	+ // Return
	209	+ return;
	210	+}
	211	+
	212	+
	213	+/*********************************************************************//
	214	+ * @brief Run search time variability tool
	215	+ ***************************************************************************/
	216	+void ctfindvar::run(void)
	217	+{
	218	+ // If we're in debug mode then all output is also dumped on the screen
	219	+ if (logDebug()) {
	220	+ log.cout(true);
	221	+ }
	222	+
	223	+ // Get task parameters
	224	+ get_parameters();
	225	+
	226	+ // Write input observation container into logger
	227	+ log_observations(NORMAL, m_obs, "Input observation");
	228	+
	229	+ // TODO: Your code goes here
	230	+
	231	+ // Return
	232	+ return;
	233	+}
	234	+
	235	+
	236	+/*********************************************************************//
	237	+ * @brief Save something
	238	+ *
	239	+ * Saves something.
	240	+ ***************************************************************************/
	241	+void ctfindvar::save(void)
	242	+{
	243	+ // Write header
	244	+ log_header1(TERSE, "Save something");
	245	+
	246	+ // TODO: Your code goes here
	247	+
	248	+ // Return
	249	+ return;
	250	+}
	251	+
	252	+
	253	+/*==========================================================================
	254	+ = =
	255	+ = Private methods =
	256	+ = =
	257	+ ==========================================================================*/
	258	+
	259	+/*********************************************************************//
	260	+ * @brief Initialise class members
	261	+ ***************************************************************************/
	262	+void ctfindvar::init_members(void)
	263	+{
	264	+ // Initialise members
	265	+ // TODO: Your code goes here
	266	+
	267	+ // Return
	268	+ return;
	269	+}
	270	+
	271	+
	272	+/*********************************************************************//
	273	+ * @brief Copy class members
	274	+ *
	275	+ * @param[in] app search time variability tool.
	276	+ ***************************************************************************/
	277	+void ctfindvar::copy_members(const ctfindvar& app)
	278	+{
	279	+ // Copy attributes
	280	+ // TODO: Your code goes here
	281	+
	282	+ // Return
	283	+ return;
	284	+}
	285	+
	286	+
	287	+/*********************************************************************//
	288	+ * @brief Delete class members
	289	+ ***************************************************************************/
	290	+void ctfindvar::free_members(void)
	291	+{
	292	+ // Return
	293	+ return;
	294	+}
	295	+
	296	+
	297	+/*********************************************************************//
	298	+ * @brief Get application parameters
	299	+ *
	300	+ * @todo Implement method
	301	+ ***************************************************************************/
	302	+void ctfindvar::get_parameters(void)
	303	+{
	304	+ // TODO: Your code goes here
	305	+
	306	+ // Write parameters into logger
	307	+ log_parameters(TERSE);
	308	+
	309	+ // Return
	310	+ return;
	311	+}
...	...

src/ctfindvar/ctfindvar.hpp 0 → 100644

View file @155cf0c

	1	+/***************************************************************************
	2	+ * ctfindvar - search time variability tool *
	3	+ * ----------------------------------------------------------------------- *
	4	+ * copyright (C) 2018 by Simon Bonnefoy *
	5	+ * ----------------------------------------------------------------------- *
	6	+ * *
	7	+ * This program is free software: you can redistribute it and/or modify *
	8	+ * it under the terms of the GNU General Public License as published by *
	9	+ * the Free Software Foundation, either version 3 of the License, or *
	10	+ * (at your option) any later version. *
	11	+ * *
	12	+ * This program is distributed in the hope that it will be useful, *
	13	+ * but WITHOUT ANY WARRANTY; without even the implied warranty of *
	14	+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the *
	15	+ * GNU General Public License for more details. *
	16	+ * *
	17	+ * You should have received a copy of the GNU General Public License *
	18	+ * along with this program. If not, see <http://www.gnu.org/licenses/>. *
	19	+ * *
	20	+ ***************************************************************************/
	21	+/**
	22	+ * @file ctfindvar.hpp
	23	+ * @brief search time variability tool definition
	24	+ * @author Simon Bonnefoy
	25	+ */
	26	+
	27	+#ifndef CTFINDVAR_HPP
	28	+#define CTFINDVAR_HPP
	29	+
	30	+/* __ Includes ___________________________________________________________ */
	31	+#include "ctobservation.hpp"
	32	+
	33	+/* __Definitions _________________________________________________________ */
	34	+#define CTFINDVAR_NAME "ctfindvar"
	35	+
	36	+
	37	+/*********************************************************************//
	38	+ * @class ctfindvar
	39	+ *
	40	+ * @brief search time variability tool
	41	+ *
	42	+ * @todo Add tool description.
	43	+ ***************************************************************************/
	44	+class ctfindvar : public ctobservation {
	45	+public:
	46	+ // Constructors and destructors
	47	+ ctfindvar(void);
	48	+ explicit ctfindvar(const GObservations& obs);
	49	+ ctfindvar(int argc, char *argv[]);
	50	+ ctfindvar(const ctfindvar& app);
	51	+ virtual ~ctfindvar(void);
	52	+
	53	+ // Operators
	54	+ ctfindvar& operator=(const ctfindvar& app);
	55	+
	56	+ // Methods
	57	+ void clear(void);
	58	+ void run(void);
	59	+ void save(void);
	60	+
	61	+protected:
	62	+ // Protected methods
	63	+ void init_members(void);
	64	+ void copy_members(const ctfindvar& app);
	65	+ void free_members(void);
	66	+ void get_parameters(void);
	67	+
	68	+ // Protected members
	69	+ // TODO: Add any data members that are necessary
	70	+};
	71	+
	72	+#endif /* CTFINDVAR_HPP */
...	...

src/ctfindvar/ctfindvar.par 0 → 100644

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	1	+#############################################################################
	2	+# #
	3	+# CTA Science Analysis Tools #
	4	+# #
	5	+# ------------------------------------------------------------------------- #
	6	+# #
	7	+# File: ctfindvar.par #
	8	+# #
	9	+# Author: Simon Bonnefoy #
	10	+# simon.bonnefoy@desy.de #
	11	+# DESY #
	12	+# #
	13	+# Purpose: Parameter file for the ctfindvar tool #
	14	+# #
	15	+#############################################################################
	16	+#
	17	+# General parameters
	18	+#===================
	19	+# Your parameters go here
	20	+
	21	+#
	22	+# Standard parameters
	23	+#====================
	24	+chatter, i, h, 2,0,4, "Chattiness of output"
	25	+clobber, b, h, yes,,, "Overwrite existing output files with new output files?"
	26	+debug, b, h, no,,, "Activate debugging mode?"
	27	+mode, s, h, ql,,, "Mode of automatic parameters"
	28	+logfile, f, h, ctfindvar.log,,, "Log filename"
...	...

src/ctfindvar/main.cpp 0 → 100644

View file @155cf0c

	1	+/***************************************************************************
	2	+ ctfindvar - search time variability tool main code
	3	+ * ----------------------------------------------------------------------- *
	4	+ * copyright (C) 2018 by Simon Bonnefoy *
	5	+ * ----------------------------------------------------------------------- *
	6	+ * *
	7	+ * This program is free software: you can redistribute it and/or modify *
	8	+ * it under the terms of the GNU General Public License as published by *
	9	+ * the Free Software Foundation, either version 3 of the License, or *
	10	+ * (at your option) any later version. *
	11	+ * *
	12	+ * This program is distributed in the hope that it will be useful, *
	13	+ * but WITHOUT ANY WARRANTY; without even the implied warranty of *
	14	+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the *
	15	+ * GNU General Public License for more details. *
	16	+ * *
	17	+ * You should have received a copy of the GNU General Public License *
	18	+ * along with this program. If not, see <http://www.gnu.org/licenses/>. *
	19	+ * *
	20	+ ***************************************************************************/
	21	+/**
	22	+ * @file ctfindvar/main.cpp
	23	+ * @brief search time variability tool main code
	24	+ * @author Simon Bonnefoy
	25	+ */
	26	+
	27	+/* __ Includes ___________________________________________________________ */
	28	+#ifdef HAVE_CONFIG_H
	29	+#include <config.h>
	30	+#endif
	31	+#include "support.hpp"
	32	+#include "ctfindvar.hpp"
	33	+
	34	+
	35	+/*********************************************************************//
	36	+ * @brief Main entry point of application
	37	+ *
	38	+ * @param[in] argc Number of command line arguments.
	39	+ * @param[in] argv Command line arguments.
	40	+ *
	41	+ * This is the main entry point of the ctfindvar application. It allocates a
	42	+ * ctfindvar object and executes the application. Any exceptions that occur
	43	+ * will be catched and corresponding error messages written in the
	44	+ * application logger and into the standard output.
	45	+ ***************************************************************************/
	46	+int main (int argc, char *argv[])
	47	+{
	48	+ // Initialise return code
	49	+ int rc = 1;
	50	+
	51	+ // Initialise pointer on application
	52	+ ctfindvar* application = NULL;
	53	+
	54	+ // Try creating an instance of the application and executing the instance
	55	+ try {
	56	+
	57	+ // Create instance of application
	58	+ application = new ctfindvar(argc, argv);
	59	+
	60	+ // Execute ctool
	61	+ rc = execute_ctool(application);
	62	+
	63	+ }
	64	+
	65	+ catch (std::exception &e) {
	66	+
	67	+ // Report exception
	68	+ report_ctool_failure("ctfindvar", e.what());
	69	+
	70	+ }
	71	+
	72	+ // Delete application
	73	+ delete application;
	74	+
	75	+ // Return
	76	+ return rc;
	77	+}
...	...

test/test_ctfindvar.py 0 → 100644

View file @155cf0c

	1	+#! /usr/bin/env python
	2	+# ==========================================================================
	3	+# This scripts performs unit tests for the ctfindvar tool.
	4	+#
	5	+# Copyright (C) 2018 Simon Bonnefoy
	6	+#
	7	+# This program is free software: you can redistribute it and/or modify
	8	+# it under the terms of the GNU General Public License as published by
	9	+# the Free Software Foundation, either version 3 of the License, or
	10	+# (at your option) any later version.
	11	+#
	12	+# This program is distributed in the hope that it will be useful,
	13	+# but WITHOUT ANY WARRANTY; without even the implied warranty of
	14	+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
	15	+# GNU General Public License for more details.
	16	+#
	17	+# You should have received a copy of the GNU General Public License
	18	+# along with this program. If not, see <http://www.gnu.org/licenses/>.
	19	+#
	20	+# ==========================================================================
	21	+import os
	22	+import gammalib
	23	+import ctools
	24	+from testing import test
	25	+
	26	+
	27	+# ======================= #
	28	+# Test class for ctfindvar tool #
	29	+# ======================= #
	30	+class Test(test):
	31	+ """
	32	+ Test class for ctfindvar tool
	33	+
	34	+ This test class makes unit tests for the ctfindvar tool by using it from
	35	+ the command line and from Python.
	36	+ """
	37	+
	38	+ # Constructor
	39	+ def __init__(self):
	40	+ """
	41	+ Constructor
	42	+ """
	43	+ # Call base class constructor
	44	+ test.__init__(self)
	45	+
	46	+ # Return
	47	+ return
	48	+
	49	+ # Set test functions
	50	+ def set(self):
	51	+ """
	52	+ Set all test functions
	53	+ """
	54	+ # Set test name
	55	+ self.name('ctfindvar')
	56	+
	57	+ # Append tests
	58	+ self.append(self._test_cmd, 'Test ctfindvar on command line')
	59	+ self.append(self._test_python, 'Test ctfindvar from Python')
	60	+
	61	+ # Return
	62	+ return
	63	+
	64	+ # Test ctfindvar on command line
	65	+ def _test_cmd(self):
	66	+ """
	67	+ Test ctfindvar on the command line
	68	+ """
	69	+ # Set tool name
	70	+ ctfindvar = self._tool('ctfindvar')
	71	+
	72	+ # Setup ctfindvar command
	73	+ cmd = ctfindvar+' logfile="ctfindvar_cmd1.log" chatter=1'
	74	+
	75	+ # Check if execution was successful
	76	+ self.test_value(self._execute(cmd), 0,
	77	+ 'Check successful execution from command line')
	78	+
	79	+ # Check ctfindvar --help
	80	+ self._check_help(ctfindvar)
	81	+
	82	+ # Return
	83	+ return
	84	+
	85	+ # Test ctfindvar from Python
	86	+ def _test_python(self):
	87	+ """
	88	+ Test ctfindvar from Python
	89	+ """
	90	+ # Allocate ctfindvar
	91	+ tool = ctools.ctfindvar()
	92	+
	93	+ # Check that saving does not nothing
	94	+ tool['logfile'] = 'ctfindvar_py0.log'
	95	+ tool.logFileOpen()
	96	+ tool.save()
	97	+ self.test_assert(not os.path.isfile('ctfindvar_py0.fits'),
	98	+ 'Check that no FITS file has been created')
	99	+
	100	+ # Check that clearing does not lead to an exception or segfault
	101	+ tool.clear()
	102	+
	103	+ # Now set ctfindvar parameters
	104	+ tool['logfile'] = 'ctfindvar_py1.log'
	105	+ tool['chatter'] = 2
	106	+
	107	+ # Run ctfindvar tool
	108	+ tool.logFileOpen()
	109	+ tool.run()
	110	+
	111	+ # Check result
	112	+ self._check_result(tool)
	113	+
	114	+ # Copy ctfindvar tool
	115	+ cpy_tool = tool.copy()
	116	+
	117	+ # Check result
	118	+ self._check_result(cpy_tool)
	119	+
	120	+ # Run copy of ctfindvar tool again
	121	+ cpy_tool['logfile'] = 'ctfindvar_py2.log'
	122	+ cpy_tool['chatter'] = 3
	123	+ cpy_tool.logFileOpen()
	124	+ cpy_tool.run()
	125	+
	126	+ # Check result
	127	+ self._check_result(cpy_tool)
	128	+
	129	+ # Return
	130	+ return
	131	+
	132	+ # Check ctfindvar result
	133	+ def _check_result(self, tool):
	134	+ """
	135	+ Check content of tool
	136	+
	137	+ Parameters
	138	+ ----------
	139	+ tool : `~ctools.ctfindvar`
	140	+ ctfindvar instance
	141	+ """
	142	+ # TODO: Implement test on tool result
	143	+
	144	+ # Return
	145	+ return
...	...