Iftach Sadeh / ctools

Commit a5030d6d3dfa96e006f9e8e0445e9d15d6797278

Authored by Michael Mayer
1 parent db573ea0

Added cstsmapmerge and included documentation and unit tests

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Showing 11 changed files with 630 additions and 13 deletions
cscripts/Makefile.am
  View file @a5030d6
1 1 ## Process this file with automake to produce Makefile.in
2 2  
3   -# Scripts to be distributed in bindir
4   -binscripts = tsmerge.py
5   -
6 3 # Scripts to be distributed in $(pyexecdir)/cscripts
7 4 pythonscripts = __init__.py \
8 5 cspull.py cssens.py cstsdist.py cscaldb.py csresmap.py \
9 6 cshessobs.py csobsdef.py csspec.py cslightcrv.py csobsinfo.py \
10   - csinfo.py csmodelinfo.py csmodelmerge.py \
  7 + csinfo.py csmodelinfo.py csmodelmerge.py cstsmapmerge.py \
11 8 obsutils.py
12 9  
13 10 # Scripts for which symbolic links will be created in bindir
14 11 linkscripts = cspull cssens cstsdist cscaldb csresmap \
15 12 cshessobs csobsdef csspec cslightcrv csobsinfo csmodelmerge \
16   - csinfo csmodelinfo
  13 + csinfo csmodelinfo cstsmapmerge
17 14  
18 15 # Distribute scripts
19 16 EXTRA_DIST = $(binscripts) $(pythonscripts)
... ...
cscripts/csmodelinfo.py
  View file @a5030d6
... ... @@ -499,7 +499,7 @@ class csmodelinfo(ctools.cscript):
499 499 # ======================== #
500 500 if __name__ == '__main__':
501 501 """
502   - Generates caldb entry.
  502 + Generates model information output.
503 503 """
504 504 # Create instance of application
505 505 app = csmodelinfo(sys.argv)
... ...
cscripts/csmodelmerge.py
  View file @a5030d6
... ... @@ -116,7 +116,7 @@ class csmodelmerge(ctools.cscript):
116 116  
117 117 # Throw exception if input models cannot be decoded
118 118 else:
119   - msg = "Parameter \"inmodels\" must contain either an @asci file, a comma-separated or space-separated list of files or a wildcard string"
  119 + msg = "Parameter \"inmodels\" must contain either an @ASCII file, a comma-separated or space-separated list of files or a wildcard string"
120 120 raise gammalib.GException.invalid_argument("csmodelmerge::get_parameters", msg)
121 121  
122 122 # Get output file
... ... @@ -205,7 +205,7 @@ class csmodelmerge(ctools.cscript):
205 205 # ======================== #
206 206 if __name__ == '__main__':
207 207 """
208   - Generates caldb entry.
  208 + Merges model XML files
209 209 """
210 210 # Create instance of application
211 211 app = csmodelmerge(sys.argv)
... ...
cscripts/csobsinfo.py
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... ... @@ -452,7 +452,7 @@ class csobsinfo(ctools.cscript):
452 452 # ======================== #
453 453 if __name__ == '__main__':
454 454 """
455   - Generates caldb entry.
  455 + Generates information about an observation container.
456 456 """
457 457 # Create instance of application
458 458 app = csobsinfo(sys.argv)
... ...
cscripts/cstsmapmerge.py 0 → 100755
  View file @a5030d6
  1 +#!/usr/bin/env python
  2 +# ==========================================================================
  3 +# Merges sliced TS map files into one map
  4 +#
  5 +# Copyright (C) 2015 Michael Mayer
  6 +#
  7 +# This program is free software: you can redistribute it and/or modify
  8 +# it under the terms of the GNU General Public License as published by
  9 +# the Free Software Foundation, either version 3 of the License, or
  10 +# (at your option) any later version.
  11 +#
  12 +# This program is distributed in the hope that it will be useful,
  13 +# but WITHOUT ANY WARRANTY; without even the implied warranty of
  14 +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
  15 +# GNU General Public License for more details.
  16 +#
  17 +# You should have received a copy of the GNU General Public License
  18 +# along with this program. If not, see <http://www.gnu.org/licenses/>.
  19 +#
  20 +# ==========================================================================
  21 +import gammalib
  22 +import ctools
  23 +import sys
  24 +import glob
  25 +import os
  26 +
  27 +
  28 +# =============== #
  29 +# cshessobs class #
  30 +# =============== #
  31 +class cstsmapmerge(ctools.cscript):
  32 + """
  33 + This class merges an arbitray number of model container into one output model XML file
  34 + """
  35 + def __init__(self, *argv):
  36 + """
  37 + Constructor.
  38 + """
  39 + # Set name
  40 + self.name = "cstsmapmerge"
  41 + self.version = "0.1.0"
  42 +
  43 + # Make sure that parfile exists
  44 + file = self.parfile()
  45 +
  46 + # Initialise application
  47 + if len(argv) == 0:
  48 + ctools.cscript.__init__(self, self.name, self.version)
  49 + elif len(argv) == 1:
  50 + ctools.cscript.__init__(self, self.name, self.version, *argv)
  51 + else:
  52 + raise TypeError("Invalid number of arguments given.")
  53 +
  54 + # Set logger properties
  55 + self.log_header()
  56 + self.log.date(True)
  57 +
  58 + # Return
  59 + return
  60 +
  61 + def __del__(self):
  62 + """
  63 + Destructor.
  64 + """
  65 + # Return
  66 + return
  67 +
  68 + def parfile(self):
  69 + """
  70 + Check if parfile exists. If parfile does not exist then create a
  71 + default parfile. This kluge avoids shipping the cscript with a parfile.
  72 + """
  73 +
  74 + # Set parfile name
  75 + parfile = self.name+".par"
  76 +
  77 + try:
  78 + pars = gammalib.GApplicationPars(parfile)
  79 + except:
  80 + # Signal that parfile was not found
  81 + print("Parfile \""+parfile+"\" not found. Create default parfile.")
  82 +
  83 + # Create default parfile
  84 + pars = gammalib.GApplicationPars()
  85 + pars.append(gammalib.GApplicationPar("inmaps","s","a","tsmap.fits","","","Input TS map FITS files"))
  86 + pars.append(gammalib.GApplicationPar("outmap","f","a","NONE","","","Output TS map FITS file"))
  87 + pars.append(gammalib.GApplicationPar("overwrite","b","h","yes","","","Overwrite previously filled bins?"))
  88 + pars.append(gammalib.GApplicationPar("delete","b","h","no","","","Delete merged files?"))
  89 + pars.append_standard()
  90 + pars.append(gammalib.GApplicationPar("logfile","f","h","cstsmapmerge.log","","","Log filename"))
  91 + pars.save(parfile)
  92 +
  93 + # Return
  94 + return
  95 +
  96 + def get_parameters(self):
  97 + """
  98 + Get parameters from parfile and setup the observation.
  99 + """
  100 + # Get input models
  101 + self.inmodels = self["inmaps"].string()
  102 +
  103 + # Interpet inmodels string
  104 + # Handle ascii files
  105 + if "@" == self.inmodels[0]:
  106 + self.files = open(self.inmodels.replace("@","")).read().splitlines()
  107 +
  108 + # Handle wild card strings
  109 + elif "*" in self.inmodels:
  110 + self.files = glob.glob(self.inmodels)
  111 +
  112 + # Handle space-separated list
  113 + elif " " in self.inmodels:
  114 + self.files = self.inmodels.split(" ")
  115 +
  116 + # Handle comma-separated list
  117 + elif "," in self.inmodels:
  118 + self.files = self.inmodels.split(",")
  119 +
  120 + # Throw exception if input models cannot be decoded
  121 + else:
  122 + msg = "Parameter \"inmmaps\" must contain either an @ASCII file, a comma-separated or space-separated list of files or a wildcard string"
  123 + sys.exit(msg)
  124 +
  125 + if len(self.files) <= 1:
  126 + msg = "Need at least two files to start merging, "+str(len(self.files))+" given"
  127 + sys.exit(msg)
  128 +
  129 + # Get output file
  130 + self.outmap = self["outmap"].filename()
  131 +
  132 + # Get other parameters
  133 + self.overwrite = self["overwrite"].boolean()
  134 + self.delete = self["delete"].boolean()
  135 +
  136 + # Return
  137 + return
  138 +
  139 +
  140 + def init_map(self, fitsfile):
  141 +
  142 + self.in_filename = fitsfile
  143 +
  144 + # open FITS file
  145 +
  146 + fits = gammalib.GFits(fitsfile)
  147 + self.tsmap = gammalib.GSkyMap()
  148 + self.tsmap.read(fits[0])
  149 +
  150 + self.statusmap = gammalib.GSkyMap()
  151 + self.statusmap.read(fits["STATUS MAP"])
  152 +
  153 + # Get other maps
  154 + self.maps = []
  155 + self.mapnames = []
  156 +
  157 + # Loop over extensions
  158 + for hdu in fits:
  159 +
  160 + # Leave out primary and status extension
  161 + if hdu.extname() != "IMAGE" and hdu.extname() != "STATUS MAP":
  162 +
  163 + # Add present maps
  164 + skymap = gammalib.GSkyMap()
  165 + skymap.read(hdu)
  166 + self.maps.append(skymap)
  167 + self.mapnames.append(hdu.extname())
  168 +
  169 + # Close FITS file
  170 + fits.close()
  171 +
  172 + # Return
  173 + return
  174 +
  175 + # Add map instances to each other
  176 + # in this way the TS maps get merged
  177 + def add(self, fitsfile):
  178 +
  179 + # open FITS file
  180 + fits = gammalib.GFits(fitsfile)
  181 + add_tsmap = gammalib.GSkyMap()
  182 + add_tsmap.read(fits[0])
  183 +
  184 + add_statusmap = gammalib.GSkyMap()
  185 + add_statusmap.read(fits["STATUS MAP"])
  186 +
  187 + # Get other maps
  188 + add_maps = []
  189 +
  190 + # Loop over extensions
  191 + for hdu in fits:
  192 +
  193 + # Leave out primary and status extension
  194 + if hdu.extname() != "IMAGE" and hdu.extname() != "STATUS MAP":
  195 +
  196 + # Add present maps
  197 + skymap = gammalib.GSkyMap()
  198 + skymap.read(hdu)
  199 + add_maps.append(skymap)
  200 +
  201 + # Close FITS file
  202 + fits.close()
  203 +
  204 + # Compare size of other maps
  205 + if not len(add_maps) == len(self.maps):
  206 + self.error("Maps cannot be added: Maps from \""+self.in_filename+"\" do not match from \""+fitsfile+"\"")
  207 +
  208 + # Loop over bins
  209 + for i in range(self.tsmap.npix()):
  210 + if add_statusmap[i] > 0.5:
  211 +
  212 + # throw exception if this bin has already been computed
  213 + if self.statusmap[i] > 0.5 and not self.overwrite:
  214 + msg = "Attempt to merge bin which apparently has already been merged. File \""+fitsfile+"\" contains already merged bins."
  215 + msg += " Set hidden parameter overwrite=yes to avoid this error"
  216 + raise gammalib.GException("cstsmapmerge::add", msg)
  217 +
  218 + # Copy TS values
  219 + self.tsmap[i] = add_tsmap[i]
  220 +
  221 + # Copy status
  222 + self.statusmap[i] = add_statusmap[i]
  223 +
  224 + # Loop over maps and copy entries
  225 + for j in range(len(self.maps)):
  226 + self.maps[j][i] = add_maps[j][i]
  227 +
  228 + # Return
  229 + return
  230 +
  231 + def run(self):
  232 + """
  233 + Run the script.
  234 + """
  235 + # Switch screen logging on in debug mode
  236 + if self.logDebug():
  237 + self.log.cout(True)
  238 +
  239 + # Get parameters
  240 + self.get_parameters()
  241 +
  242 + # Write input parameters into logger
  243 + if self.logTerse():
  244 + self.log_parameters()
  245 + self.log("\n")
  246 +
  247 + if self.logTerse():
  248 + self.log("\n")
  249 + self.log.header1("Merging sliced TS map files")
  250 + self.log("\n")
  251 +
  252 + # Initialise file to start with
  253 + file0 =""
  254 +
  255 + self.added_files = []
  256 +
  257 + # Test files for the entry status map
  258 + # use the first one to appear useful
  259 + for fitsfile in self.files:
  260 + if not gammalib.is_fits(fitsfile):
  261 + self.log("Skipping file \""+fitsfile+" (not a FITS file)\n")
  262 + fits = gammalib.GFits(fitsfile)
  263 +
  264 + if fits.contains("STATUS MAP"):
  265 + self.log("Using file \""+fitsfile+"\" as initialising map\n")
  266 + file0 = fitsfile
  267 + break
  268 + else:
  269 + if self.logExplicit():
  270 + self.log("File \""+fitsfile+"\" has not \"STATUS MAP\" extension\n")
  271 +
  272 + # Print an error message if no suitable file was provided
  273 + if file0 == "":
  274 + if self.logTerse():
  275 + self.log("None of the provided file seems to be a sliced ts map file (no \"STATUS MAP\" extension)\n")
  276 +
  277 + # Otherwise merge files
  278 + else:
  279 +
  280 + # copy file list
  281 + workfiles = self.files
  282 +
  283 + # Remove entry which will be used to initalise the map
  284 + workfiles.remove(file0)
  285 +
  286 + # Initialise map from first file
  287 + self.init_map(file0)
  288 +
  289 + # Append to added files
  290 + self.added_files.append(file0)
  291 +
  292 + # Loop over files
  293 + for fitsfile in workfiles:
  294 +
  295 + # Skip if file is not FITS
  296 + if not gammalib.is_fits(fitsfile):
  297 + if self.logTerse():
  298 + self.log("Skipping file \""+fitsfile+" (not a FITS file)\n")
  299 + continue
  300 +
  301 + # Skip if file does not contain status map
  302 + fits = gammalib.GFits(fitsfile)
  303 + if not fits.contains("STATUS MAP"):
  304 + if self.logTerse():
  305 + self.log("Skipping file \""+fitsfile+" (not a FITS file)\n")
  306 + continue
  307 +
  308 + # Logging
  309 + if self.logTerse():
  310 + self.log("Adding TS map slice \""+fitsfile+"\"\n")
  311 +
  312 + # Add file
  313 + self.add(fitsfile)
  314 +
  315 + # Append to added files
  316 + self.added_files.append(fitsfile)
  317 +
  318 + # Return
  319 + return
  320 +
  321 +
  322 + def save(self):
  323 + """
  324 + Save merged tsmap file and remove slices if requested
  325 + """
  326 +
  327 + # Logging
  328 + if self.logExplicit():
  329 + self.log("\n")
  330 + self.log.header1("Saving merged TS map")
  331 + self.log("\n")
  332 +
  333 + # Create FITS file
  334 + fits = gammalib.GFits()
  335 +
  336 + # Write TS map into primary
  337 + self.tsmap.write(fits)
  338 +
  339 + # Loop over maps and write them to fits
  340 + for i in range(len(self.maps)):
  341 + self.maps[i].write(fits)
  342 +
  343 + # Set map names as extensions
  344 + for i in range(len(self.mapnames)):
  345 + fits[i+1].extname(self.mapnames[i])
  346 +
  347 + # Check if map is fully done
  348 + done = True
  349 + for pix in self.statusmap:
  350 + if pix < 0.5:
  351 + done = False
  352 + break
  353 +
  354 + # Write Status map if we are not done yet
  355 + if not done:
  356 + self.statusmap.write(fits)
  357 + fits[fits.size()-1].extname("STATUS MAP")
  358 +
  359 + # Save FITS file
  360 + fits.saveto(self.outmap, self.clobber())
  361 + if self.logExplicit():
  362 + self.log("Saved output map to \""+self.outmap+"\"\n")
  363 + if self.delete:
  364 + if self.logTerse():
  365 + self.log("\n")
  366 + self.log.header1("Deleting slices")
  367 + self.log("\n")
  368 + for filename in self.added_files:
  369 + if self.logExplicit():
  370 + self.log("Deleting file \""+filename+"\"\n")
  371 + os.remove(filename)
  372 +
  373 + # Return
  374 + return
  375 +
  376 +
  377 + def execute(self):
  378 + """
  379 + Execute the script.
  380 + """
  381 + # Run the script
  382 + self.run()
  383 +
  384 + # Save ds9 file if required
  385 + self.save()
  386 +
  387 + # Return
  388 + return
  389 +
  390 +
  391 +# ======================== #
  392 +# Main routine entry point #
  393 +# ======================== #
  394 +if __name__ == '__main__':
  395 + """
  396 + Merges ts map slices.
  397 + """
  398 + # Create instance of application
  399 + app = cstsmapmerge(sys.argv)
  400 +
  401 + # Open logfile
  402 + app.logFileOpen()
  403 +
  404 + # Execute application
  405 + app.execute()
... ...
doc/source/reference_manual/csmodelmerge.rst 0 → 100644
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  1 +.. _csmodelmerge:
  2 +
  3 +csmodelmerge
  4 +======
  5 +
  6 +Merges an arbitrary number of model XML files into one file.
  7 +
  8 +
  9 +Synopsis
  10 +--------
  11 +
  12 +This script can be used to merge several model XML file into one output file.
  13 +The files can be passed via the ``inmodels`` parameter. There are 4 options to specify
  14 +a list of files that should be merged:
  15 +- a space-separated list of file names (e.g. model1.xml model2.xml)
  16 +- a comma-separated list of file names (e.g. model1.xml,model2.xml)
  17 +- a wildcard string (e.g. mymodel*.xml)
  18 +- an ASCII file containing the file names, one file per line (e.g. @mymodels.txt)
  19 +
  20 +Note that the "@" needs to be specified in case of an ASCII file name. It is also important to
  21 +note that models with the same name cannot be appended. The tool will throw and exception if
  22 +the provided file contain models with the same name.
  23 +
  24 +
  25 +General parameters
  26 +------------------
  27 +
  28 +``inmodels [string]``
  29 + Input model XML files
  30 +
  31 +``outmodel [file]``
  32 + Output model file
  33 +
  34 +
  35 +Standard parameters
  36 +-------------------
  37 +
  38 +``(chatter = 2) [integer]``
  39 + Verbosity of the executable:
  40 + chatter = 0: no information will be logged
  41 +
  42 + chatter = 1: only errors will be logged
  43 +
  44 + chatter = 2: errors and actions will be logged
  45 +
  46 + chatter = 3: report about the task execution
  47 +
  48 + chatter = 4: detailed report about the task execution
  49 +
  50 +``(clobber = yes) [boolean]``
  51 + Specifies whether an existing output counts cube should be overwritten.
  52 +
  53 +``(debug = no) [boolean]``
  54 + Enables debug mode. In debug mode the executable will dump any log file output to the console.
  55 +
  56 +``(mode = ql) [string]``
  57 + Mode of automatic parameters (default is "ql", i.e. "query and learn").
  58 +
  59 +``(logfile = cssens.log) [filename]``
  60 + Log filename.
  61 +
  62 +
  63 +Related tools or scripts
  64 +------------------------
  65 +
... ...
doc/source/reference_manual/cstsmapmerge.rst 0 → 100644
  View file @a5030d6
  1 +.. _cstsmapmerge:
  2 +
  3 +cstsmapmerge
  4 +======
  5 +
  6 +Merges slices of splitted tsmap computations.
  7 +
  8 +
  9 +Synopsis
  10 +--------
  11 +In case a TS map has been computed using the option to split the calculations into
  12 +several jobs, this tool is required to merge the output into one final map again.
  13 +Running :doc:`cttsmap` with the hidden parameters ``binmin`` and ``binmax`` specified
  14 +will result in several sliced TS maps. This script merges them into one FITS file.
  15 +The input slices can be passed via the ``inmaps`` parameter. There are 4 options to specify
  16 +a list of files that should be merged:
  17 +- a space-separated list of file names (e.g. tsmap1.fits tsmap2.fits)
  18 +- a comma-separated list of file names (e.g. tsmap1.fits,tsmap2.fits)
  19 +- a wildcard string (e.g. tsmap*.xml)
  20 +- an ASCII file containing the file names, one file per line (e.g. @mymaps.txt)
  21 +
  22 +Note that the "@" needs to be specified in case of an ASCII file name.
  23 +
  24 +General parameters
  25 +------------------
  26 +
  27 +``inmaps [string]``
  28 + Input TS map FITS files
  29 +
  30 +``outmap [file]``
  31 + Output TS map FITS file
  32 +
  33 +``(overwrite=yes) [boolean]``
  34 + Overwrite previously filled bins?
  35 +
  36 +``(delete=no) [boolean]``
  37 + Delete merged files?
  38 +
  39 +
  40 +Standard parameters
  41 +-------------------
  42 +
  43 +``(chatter = 2) [integer]``
  44 + Verbosity of the executable:
  45 + chatter = 0: no information will be logged
  46 +
  47 + chatter = 1: only errors will be logged
  48 +
  49 + chatter = 2: errors and actions will be logged
  50 +
  51 + chatter = 3: report about the task execution
  52 +
  53 + chatter = 4: detailed report about the task execution
  54 +
  55 +``(clobber = yes) [boolean]``
  56 + Specifies whether an existing output counts cube should be overwritten.
  57 +
  58 +``(debug = no) [boolean]``
  59 + Enables debug mode. In debug mode the executable will dump any log file output to the console.
  60 +
  61 +``(mode = ql) [string]``
  62 + Mode of automatic parameters (default is "ql", i.e. "query and learn").
  63 +
  64 +``(logfile = cssens.log) [filename]``
  65 + Log filename.
  66 +
  67 +
  68 +Related tools or scripts
  69 +------------------------
  70 +
... ...
doc/source/reference_manual/index.rst
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... ... @@ -47,3 +47,5 @@ cscripts
47 47 cstsdist --- Generates TS distribution <cstsdist>
48 48 csobsinfo --- Shows detailled information about an observation container
49 49 csmodelinfo --- Shows detailled information about a model container
  50 + csmodelmerge --- Merges several model containers into one file
  51 + cstsmapmerge --- Merges slices from ts map computations
... ...
test/data/tsmap_0.fits 0 → 100644
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test/data/tsmap_1.fits 0 → 100644
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test/test_cscripts.sh.in
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... ... @@ -117,7 +117,7 @@ $ECHO &quot; ok&quot;
117 117 #
118 118 # Test csmodelmerge (space-separated)
119 119 # ==============
120   -$ECHO -n "Test csmodelmerge: "
  120 +$ECHO -n "Test csmodelmerge (space-separated): "
121 121 chmod +x @abs_top_srcdir@/cscripts/csmodelmerge.py
122 122 @abs_top_srcdir@/cscripts/csmodelmerge.py \
123 123 inmodels="data/crab.xml data/source1.xml" \
... ... @@ -136,7 +136,7 @@ $ECHO &quot; ok&quot;
136 136 #
137 137 # Test csmodelmerge (comma-separated)
138 138 # ==============
139   -$ECHO -n "Test csmodelmerge: "
  139 +$ECHO -n "Test csmodelmerge (comma-separated): "
140 140 chmod +x @abs_top_srcdir@/cscripts/csmodelmerge.py
141 141 @abs_top_srcdir@/cscripts/csmodelmerge.py \
142 142 inmodels="data/crab.xml,data/source1.xml" \
... ... @@ -155,7 +155,7 @@ $ECHO &quot; ok&quot;
155 155 #
156 156 # Test csmodelmerge (wildcard string)
157 157 # ==============
158   -$ECHO -n "Test csmodelmerge: "
  158 +$ECHO -n "Test csmodelmerge (wildcard string): "
159 159 chmod +x @abs_top_srcdir@/cscripts/csmodelmerge.py
160 160 @abs_top_srcdir@/cscripts/csmodelmerge.py \
161 161 inmodels="data/model_cube_background*.xml" \
... ... @@ -175,7 +175,7 @@ $ECHO &quot; ok&quot;
175 175 # Test csmodelmerge (ascii-file)
176 176 # ==============
177 177 ls data/model_cube_background* > models.txt
178   -$ECHO -n "Test csmodelmerge: "
  178 +$ECHO -n "Test csmodelmerge (ascii-file): "
179 179 chmod +x @abs_top_srcdir@/cscripts/csmodelmerge.py
180 180 @abs_top_srcdir@/cscripts/csmodelmerge.py \
181 181 inmodels="@models.txt" \
... ... @@ -193,6 +193,84 @@ rm models.txt
193 193  
194 194  
195 195 #
  196 +# Test cstsmapmerge (comma-separated)
  197 +# ==============
  198 +$ECHO -n "Test cstsmapmerge (comma-separated): "
  199 +chmod +x @abs_top_srcdir@/cscripts/cstsmapmerge.py
  200 +@abs_top_srcdir@/cscripts/cstsmapmerge.py \
  201 + inmaps="data/tsmap_0.fits,data/tsmap_1.fits" \
  202 + outmap="merged_tsmap1.fits" > cstsmapmerge.log
  203 +$ECHO -n "."
  204 +if [ -s "merged_tsmap1.fits" ]
  205 +then
  206 + $ECHO -n "."
  207 +else
  208 + $ECHO " merged_tsmap1.fits file is not valid"
  209 + exit 1
  210 +fi
  211 +$ECHO " ok"
  212 +
  213 +
  214 +#
  215 +# Test cstsmapmerge (space-separated)
  216 +# ==============
  217 +$ECHO -n "Test cstsmapmerge (space-separated): "
  218 +chmod +x @abs_top_srcdir@/cscripts/cstsmapmerge.py
  219 +@abs_top_srcdir@/cscripts/cstsmapmerge.py \
  220 + inmaps="data/tsmap_0.fits data/tsmap_1.fits" \
  221 + outmap="merged_tsmap2.fits" > cstsmapmerge.log
  222 +$ECHO -n "."
  223 +if [ -s "merged_tsmap2.fits" ]
  224 +then
  225 + $ECHO -n "."
  226 +else
  227 + $ECHO " merged_tsmap2.fits file is not valid"
  228 + exit 1
  229 +fi
  230 +$ECHO " ok"
  231 +
  232 +
  233 +#
  234 +# Test cstsmapmerge (wildcard string)
  235 +# ==============
  236 +$ECHO -n "Test cstsmapmerge (wildcard string): "
  237 +chmod +x @abs_top_srcdir@/cscripts/cstsmapmerge.py
  238 +@abs_top_srcdir@/cscripts/cstsmapmerge.py \
  239 + inmaps="data/tsmap_*.fits" \
  240 + outmap="merged_tsmap3.fits" > cstsmapmerge.log
  241 +$ECHO -n "."
  242 +if [ -s "merged_tsmap3.fits" ]
  243 +then
  244 + $ECHO -n "."
  245 +else
  246 + $ECHO " merged_tsmap3.fits file is not valid"
  247 + exit 1
  248 +fi
  249 +$ECHO " ok"
  250 +
  251 +
  252 +#
  253 +# Test cstsmapmerge (ascii-file)
  254 +# ==============
  255 +ls data/tsmap_*.fits > tsmaps.txt
  256 +$ECHO -n "Test cstsmapmerge (ascii-file): "
  257 +chmod +x @abs_top_srcdir@/cscripts/cstsmapmerge.py
  258 +@abs_top_srcdir@/cscripts/cstsmapmerge.py \
  259 + inmaps="@tsmaps.txt" \
  260 + outmap="merged_tsmap4.fits" > cstsmapmerge.log
  261 +$ECHO -n "."
  262 +if [ -s "merged_tsmap4.fits" ]
  263 +then
  264 + $ECHO -n "."
  265 +else
  266 + $ECHO " merged_tsmap4.fits file is not valid"
  267 + exit 1
  268 +fi
  269 +$ECHO " ok"
  270 +rm tsmaps.txt
  271 +
  272 +
  273 +#
196 274 # Test cspull
197 275 # ===========
198 276 $ECHO -n "Test cspull: "
... ...