Simon Bonnefoy / ctools

Commit 8bcf9b7964be96213423b2eb9fad688befed939b

Authored by Jürgen Knödlseder
1 parent 73bec68a

Integrate code

Inline Side-by-side
Showing 43 changed files with 235 additions and 233 deletions
cscripts/csresmap.py
  View file @8bcf9b7
... ... @@ -19,6 +19,7 @@
19 19 #
20 20 # ==========================================================================
21 21 import sys
  22 +import math
22 23 import gammalib
23 24 import ctools
24 25  
... ... @@ -241,21 +242,21 @@ class csresmap(ctools.cscript):
241 242  
242 243 # Calculate significance from Li&Ma derivation
243 244 elif algorithm == 'SIGNIFICANCE':
  245 +
  246 + # Compute sign map
244 247 signmap = (self._resmap - modelmap).sign()
  248 +
  249 + # Compute logarithm of map. For that we mask pixels
245 250 logmap = self._resmap/modelmap
246   - # Masking pixels with zero counts. Put a small value >0 for log
247   - # calculation and restore the zero value afterwards
248   - mask = []
249 251 for i in range(logmap.npix()):
250   - # Testing pixel i and map 0 (there is one map only after stacking)
251   - if logmap[i,0] == 0:
252   - mask.append(i)
253   - logmap[i,0] = 1e-10
254   - logmap = logmap.log()
255   - for i in mask:
256   - logmap[i,0] = 0.
  252 + if logmap[i] > 0.0:
  253 + logmap[i] = math.log(logmap[i])
  254 + else:
  255 + logmap[i] = 0.0
  256 +
  257 + # Compute significance map
257 258 signif_squared_map = (self._resmap*logmap) + modelmap - self._resmap
258   - signif_squared_map *= 2.
  259 + signif_squared_map *= 2.0
259 260 unsigned_resmap = signif_squared_map.sqrt()
260 261 self._resmap = unsigned_resmap * signmap
261 262  
... ...
doc/source/users/reference_manual/cscaldb.rst
  View file @8bcf9b7
... ... @@ -25,15 +25,15 @@ Standard parameters
25 25  
26 26 ``(chatter = 2) [integer]``
27 27 Verbosity of the executable:
28   - chatter = 0: no information will be logged
  28 + ``chatter = 0``: no information will be logged
29 29  
30   - chatter = 1: only errors will be logged
  30 + ``chatter = 1``: only errors will be logged
31 31  
32   - chatter = 2: errors and actions will be logged
  32 + ``chatter = 2``: errors and actions will be logged
33 33  
34   - chatter = 3: report about the task execution
  34 + ``chatter = 3``: report about the task execution
35 35  
36   - chatter = 4: detailed report about the task execution
  36 + ``chatter = 4``: detailed report about the task execution
37 37  
38 38 ``(clobber = yes) [boolean]``
39 39 Specifies whether an existing output file should be overwritten.
... ...
doc/source/users/reference_manual/csebins.rst
  View file @8bcf9b7
... ... @@ -52,15 +52,15 @@ Standard parameters
52 52  
53 53 ``(chatter = 2) [integer]``
54 54 Verbosity of the executable:
55   - chatter = 0: no information will be logged
  55 + ``chatter = 0``: no information will be logged
56 56  
57   - chatter = 1: only errors will be logged
  57 + ``chatter = 1``: only errors will be logged
58 58  
59   - chatter = 2: errors and actions will be logged
  59 + ``chatter = 2``: errors and actions will be logged
60 60  
61   - chatter = 3: report about the task execution
  61 + ``chatter = 3``: report about the task execution
62 62  
63   - chatter = 4: detailed report about the task execution
  63 + ``chatter = 4``: detailed report about the task execution
64 64  
65 65 ``(clobber = yes) [boolean]``
66 66 Specifies whether an existing energy boundaries output file should be overwritten.
... ...
doc/source/users/reference_manual/csfindobs.rst
  View file @8bcf9b7
... ... @@ -69,15 +69,15 @@ Standard parameters
69 69  
70 70 ``(chatter = 2) [integer]``
71 71 Verbosity of the executable:
72   - chatter = 0: no information will be logged
  72 + ``chatter = 0``: no information will be logged
73 73  
74   - chatter = 1: only errors will be logged
  74 + ``chatter = 1``: only errors will be logged
75 75  
76   - chatter = 2: errors and actions will be logged
  76 + ``chatter = 2``: errors and actions will be logged
77 77  
78   - chatter = 3: report about the task execution
  78 + ``chatter = 3``: report about the task execution
79 79  
80   - chatter = 4: detailed report about the task execution
  80 + ``chatter = 4``: detailed report about the task execution
81 81  
82 82 ``(clobber = yes) [boolean]``
83 83 Specifies whether an existing output runlist should be overwritten.
... ... @@ -95,4 +95,4 @@ Standard parameters
95 95 Related tools or scripts
96 96 ------------------------
97 97  
98   -:doc:`csiactobs`
99 98 \ No newline at end of file
  99 +:doc:`csiactobs`
... ...
doc/source/users/reference_manual/csiactcopy.rst
  View file @8bcf9b7
... ... @@ -49,15 +49,15 @@ Standard parameters
49 49  
50 50 ``(chatter = 2) [integer]``
51 51 Verbosity of the executable:
52   - chatter = 0: no information will be logged
  52 + ``chatter = 0``: no information will be logged
53 53  
54   - chatter = 1: only errors will be logged
  54 + ``chatter = 1``: only errors will be logged
55 55  
56   - chatter = 2: errors and actions will be logged
  56 + ``chatter = 2``: errors and actions will be logged
57 57  
58   - chatter = 3: report about the task execution
  58 + ``chatter = 3``: report about the task execution
59 59  
60   - chatter = 4: detailed report about the task execution
  60 + ``chatter = 4``: detailed report about the task execution
61 61  
62 62 ``(clobber = yes) [boolean]``
63 63 Specifies whether existing output files should be overwritten.
... ... @@ -75,4 +75,4 @@ Standard parameters
75 75 Related tools or scripts
76 76 ------------------------
77 77  
78   -:doc:`csiactdata`
79 78 \ No newline at end of file
  79 +:doc:`csiactdata`
... ...
doc/source/users/reference_manual/csiactdata.rst
  View file @8bcf9b7
... ... @@ -33,15 +33,15 @@ Standard parameters
33 33  
34 34 ``(chatter = 2) [integer]``
35 35 Verbosity of the executable:
36   - chatter = 0: no information will be logged
  36 + ``chatter = 0``: no information will be logged
37 37  
38   - chatter = 1: only errors will be logged
  38 + ``chatter = 1``: only errors will be logged
39 39  
40   - chatter = 2: errors and actions will be logged
  40 + ``chatter = 2``: errors and actions will be logged
41 41  
42   - chatter = 3: report about the task execution
  42 + ``chatter = 3``: report about the task execution
43 43  
44   - chatter = 4: detailed report about the task execution
  44 + ``chatter = 4``: detailed report about the task execution
45 45  
46 46 ``(clobber = yes) [boolean]``
47 47 Specifies whether existing output files should be overwritten.
... ... @@ -59,4 +59,4 @@ Standard parameters
59 59 Related tools or scripts
60 60 ------------------------
61 61  
62   -:doc:`csfindobs`
63 62 \ No newline at end of file
  63 +:doc:`csfindobs`
... ...
doc/source/users/reference_manual/csiactobs.rst
  View file @8bcf9b7
... ... @@ -113,15 +113,15 @@ Standard parameters
113 113  
114 114 ``(chatter = 2) [integer]``
115 115 Verbosity of the executable:
116   - chatter = 0: no information will be logged
  116 + ``chatter = 0``: no information will be logged
117 117  
118   - chatter = 1: only errors will be logged
  118 + ``chatter = 1``: only errors will be logged
119 119  
120   - chatter = 2: errors and actions will be logged
  120 + ``chatter = 2``: errors and actions will be logged
121 121  
122   - chatter = 3: report about the task execution
  122 + ``chatter = 3``: report about the task execution
123 123  
124   - chatter = 4: detailed report about the task execution
  124 + ``chatter = 4``: detailed report about the task execution
125 125  
126 126 ``(clobber = yes) [boolean]``
127 127 Specifies whether existing output files should be overwritten.
... ... @@ -139,4 +139,4 @@ Standard parameters
139 139 Related tools or scripts
140 140 ------------------------
141 141  
142   -:doc:`csiactobs`
143 142 \ No newline at end of file
  143 +:doc:`csiactobs`
... ...
doc/source/users/reference_manual/cslightcrv.rst
  View file @8bcf9b7
... ... @@ -114,15 +114,15 @@ Standard parameters
114 114  
115 115 ``(chatter = 2) [integer]``
116 116 Verbosity of the executable:
117   - chatter = 0: no information will be logged
  117 + ``chatter = 0``: no information will be logged
118 118  
119   - chatter = 1: only errors will be logged
  119 + ``chatter = 1``: only errors will be logged
120 120  
121   - chatter = 2: errors and actions will be logged
  121 + ``chatter = 2``: errors and actions will be logged
122 122  
123   - chatter = 3: report about the task execution
  123 + ``chatter = 3``: report about the task execution
124 124  
125   - chatter = 4: detailed report about the task execution
  125 + ``chatter = 4``: detailed report about the task execution
126 126  
127 127 ``(clobber = yes) [boolean]``
128 128 Specifies whether an existing light curve output file should be overwritten.
... ...
doc/source/users/reference_manual/csmodelinfo.rst
  View file @8bcf9b7
... ... @@ -72,15 +72,15 @@ Standard parameters
72 72  
73 73 ``(chatter = 2) [integer]``
74 74 Verbosity of the executable:
75   - chatter = 0: no information will be logged
  75 + ``chatter = 0``: no information will be logged
76 76  
77   - chatter = 1: only errors will be logged
  77 + ``chatter = 1``: only errors will be logged
78 78  
79   - chatter = 2: errors and actions will be logged
  79 + ``chatter = 2``: errors and actions will be logged
80 80  
81   - chatter = 3: report about the task execution
  81 + ``chatter = 3``: report about the task execution
82 82  
83   - chatter = 4: detailed report about the task execution
  83 + ``chatter = 4``: detailed report about the task execution
84 84  
85 85 ``(clobber = yes) [boolean]``
86 86 Specifies whether existing output files should be overwritten.
... ...
doc/source/users/reference_manual/csmodelmerge.rst
  View file @8bcf9b7
... ... @@ -39,15 +39,15 @@ Standard parameters
39 39  
40 40 ``(chatter = 2) [integer]``
41 41 Verbosity of the executable:
42   - chatter = 0: no information will be logged
  42 + ``chatter = 0``: no information will be logged
43 43  
44   - chatter = 1: only errors will be logged
  44 + ``chatter = 1``: only errors will be logged
45 45  
46   - chatter = 2: errors and actions will be logged
  46 + ``chatter = 2``: errors and actions will be logged
47 47  
48   - chatter = 3: report about the task execution
  48 + ``chatter = 3``: report about the task execution
49 49  
50   - chatter = 4: detailed report about the task execution
  50 + ``chatter = 4``: detailed report about the task execution
51 51  
52 52 ``(clobber = yes) [boolean]``
53 53 Specifies whether an existing output model file should be overwritten.
... ... @@ -65,4 +65,4 @@ Standard parameters
65 65 Related tools or scripts
66 66 ------------------------
67 67  
68   -None
69 68 \ No newline at end of file
  69 +None
... ...
doc/source/users/reference_manual/csmodelselect.rst
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... ... @@ -56,15 +56,15 @@ Standard parameters
56 56  
57 57 ``(chatter = 2) [integer]``
58 58 Verbosity of the executable:
59   - chatter = 0: no information will be logged
  59 + ``chatter = 0``: no information will be logged
60 60  
61   - chatter = 1: only errors will be logged
  61 + ``chatter = 1``: only errors will be logged
62 62  
63   - chatter = 2: errors and actions will be logged
  63 + ``chatter = 2``: errors and actions will be logged
64 64  
65   - chatter = 3: report about the task execution
  65 + ``chatter = 3``: report about the task execution
66 66  
67   - chatter = 4: detailed report about the task execution
  67 + ``chatter = 4``: detailed report about the task execution
68 68  
69 69 ``(clobber = yes) [boolean]``
70 70 Specifies whether an existing output model file should be overwritten.
... ...
doc/source/users/reference_manual/csobs2caldb.rst
  View file @8bcf9b7
... ... @@ -49,15 +49,15 @@ Standard parameters
49 49  
50 50 ``(chatter = 2) [integer]``
51 51 Verbosity of the executable:
52   - chatter = 0: no information will be logged
  52 + ``chatter = 0``: no information will be logged
53 53  
54   - chatter = 1: only errors will be logged
  54 + ``chatter = 1``: only errors will be logged
55 55  
56   - chatter = 2: errors and actions will be logged
  56 + ``chatter = 2``: errors and actions will be logged
57 57  
58   - chatter = 3: report about the task execution
  58 + ``chatter = 3``: report about the task execution
59 59  
60   - chatter = 4: detailed report about the task execution
  60 + ``chatter = 4``: detailed report about the task execution
61 61  
62 62 ``(clobber = yes) [boolean]``
63 63 Specifies whether an existing output file should be overwritten.
... ...
doc/source/users/reference_manual/csobsdef.rst
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... ... @@ -89,15 +89,15 @@ Standard parameters
89 89  
90 90 ``(chatter = 2) [integer]``
91 91 Verbosity of the executable:
92   - chatter = 0: no information will be logged
  92 + ``chatter = 0``: no information will be logged
93 93  
94   - chatter = 1: only errors will be logged
  94 + ``chatter = 1``: only errors will be logged
95 95  
96   - chatter = 2: errors and actions will be logged
  96 + ``chatter = 2``: errors and actions will be logged
97 97  
98   - chatter = 3: report about the task execution
  98 + ``chatter = 3``: report about the task execution
99 99  
100   - chatter = 4: detailed report about the task execution
  100 + ``chatter = 4``: detailed report about the task execution
101 101  
102 102 ``(clobber = yes) [boolean]``
103 103 Specifies whether an existing Observation Definition XML file should be overwritten.
... ...
doc/source/users/reference_manual/csobsinfo.rst
  View file @8bcf9b7
... ... @@ -59,15 +59,15 @@ Standard parameters
59 59  
60 60 ``(chatter = 2) [integer]``
61 61 Verbosity of the executable:
62   - chatter = 0: no information will be logged
  62 + ``chatter = 0``: no information will be logged
63 63  
64   - chatter = 1: only errors will be logged
  64 + ``chatter = 1``: only errors will be logged
65 65  
66   - chatter = 2: errors and actions will be logged
  66 + ``chatter = 2``: errors and actions will be logged
67 67  
68   - chatter = 3: report about the task execution
  68 + ``chatter = 3``: report about the task execution
69 69  
70   - chatter = 4: detailed report about the task execution
  70 + ``chatter = 4``: detailed report about the task execution
71 71  
72 72 ``(clobber = yes) [boolean]``
73 73 Specifies whether an existing output file should be overwritten.
... ...
doc/source/users/reference_manual/csobsselect.rst
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... ... @@ -57,15 +57,15 @@ Standard parameters
57 57  
58 58 ``(chatter = 2) [integer]``
59 59 Verbosity of the executable:
60   - chatter = 0: no information will be logged
  60 + ``chatter = 0``: no information will be logged
61 61  
62   - chatter = 1: only errors will be logged
  62 + ``chatter = 1``: only errors will be logged
63 63  
64   - chatter = 2: errors and actions will be logged
  64 + ``chatter = 2``: errors and actions will be logged
65 65  
66   - chatter = 3: report about the task execution
  66 + ``chatter = 3``: report about the task execution
67 67  
68   - chatter = 4: detailed report about the task execution
  68 + ``chatter = 4``: detailed report about the task execution
69 69  
70 70 ``(clobber = yes) [boolean]``
71 71 Specifies whether an existing output model file should be overwritten
... ...
doc/source/users/reference_manual/csphasecrv.rst
  View file @8bcf9b7
... ... @@ -94,15 +94,15 @@ Standard parameters
94 94  
95 95 ``(chatter = 2) [integer]``
96 96 Verbosity of the executable:
97   - chatter = 0: no information will be logged
  97 + ``chatter = 0``: no information will be logged
98 98  
99   - chatter = 1: only errors will be logged
  99 + ``chatter = 1``: only errors will be logged
100 100  
101   - chatter = 2: errors and actions will be logged
  101 + ``chatter = 2``: errors and actions will be logged
102 102  
103   - chatter = 3: report about the task execution
  103 + ``chatter = 3``: report about the task execution
104 104  
105   - chatter = 4: detailed report about the task execution
  105 + ``chatter = 4``: detailed report about the task execution
106 106  
107 107 ``(clobber = yes) [boolean]``
108 108 Specifies whether an existing light curve output file should be overwritten.
... ...
doc/source/users/reference_manual/cspull.rst
  View file @8bcf9b7
... ... @@ -110,15 +110,15 @@ Standard parameters
110 110  
111 111 ``(chatter = 2) [integer]``
112 112 Verbosity of the executable:
113   - chatter = 0: no information will be logged
  113 + ``chatter = 0``: no information will be logged
114 114  
115   - chatter = 1: only errors will be logged
  115 + ``chatter = 1``: only errors will be logged
116 116  
117   - chatter = 2: errors and actions will be logged
  117 + ``chatter = 2``: errors and actions will be logged
118 118  
119   - chatter = 3: report about the task execution
  119 + ``chatter = 3``: report about the task execution
120 120  
121   - chatter = 4: detailed report about the task execution
  121 + ``chatter = 4``: detailed report about the task execution
122 122  
123 123 ``(clobber = yes) [boolean]``
124 124 Specifies whether an existing output file should be overwritten.
... ...
doc/source/users/reference_manual/csresmap.rst
  View file @8bcf9b7
... ... @@ -16,11 +16,12 @@ be provided so that the script can bin the data internally. The model
16 16 is then convolved with the instrumental response function for that
17 17 binning and used for residual computation. Before residual computation,
18 18 the counts and model cubes are collapsed into maps by summing over all
19   -energies. Three options exist then for residual computation:
  19 +energies. Four options exist then for residual computation:
20 20  
21 21 * the subtraction of the model from the counts (SUB)
22 22 * the subtraction and division by the model (SUBDIV)
23 23 * the subtraction and division by the square root of the model (SUBDIVSQRT)
  24 +* the computation of the significance using Li & Ma (SIGNIFICANCE)
24 25  
25 26 The residual map is written into a FITS file.
26 27  
... ... @@ -95,16 +96,16 @@ General parameters
95 96 Cube bin size (in degrees/pixel).
96 97  
97 98 ``(algorithm = SUBDIV) <SUB|SUBDIV|SUBDIVSQRT|SIGNIF> [string]``
98   - Algorithm used to generate the residual map.
  99 + Algorithm used to generate the residual map:
99 100  
100   - SUB: DATA - MODEL
  101 + ``SUB``: :math:`DATA - MODEL`
101 102  
102   - SUBDIV: (DATA - MODEL)/MODEL
  103 + ``SUBDIV``: :math:`\frac{DATA - MODEL}{MODEL}`
103 104  
104   - SUBDIVSQRT: (DATA - MODEL)/sqrt(MODEL)
  105 + ``SUBDIVSQRT``: :math:`\frac{DATA - MODEL}{\sqrt{MODEL}}`
  106 +
  107 + ``SIGNIFICANCE``: :math:`{\rm sign}(DATA-MODEL) \times \sqrt{ 2 \times ( DATA \times \ln \left(\frac{DATA}{MODEL} \right) + MODEL - DATA ) }`
105 108  
106   - SIGNIF: sign(DATA-MODEL) * sqrt( 2*( DATA*log(DATA/MODEL) + MODEL - DATA ) )
107   -
108 109  
109 110 Standard parameters
110 111 -------------------
... ... @@ -114,15 +115,15 @@ Standard parameters
114 115  
115 116 ``(chatter = 2) [integer]``
116 117 Verbosity of the executable:
117   - chatter = 0: no information will be logged
  118 + ``chatter = 0``: no information will be logged
118 119  
119   - chatter = 1: only errors will be logged
  120 + ``chatter = 1``: only errors will be logged
120 121  
121   - chatter = 2: errors and actions will be logged
  122 + ``chatter = 2``: errors and actions will be logged
122 123  
123   - chatter = 3: report about the task execution
  124 + ``chatter = 3``: report about the task execution
124 125  
125   - chatter = 4: detailed report about the task execution
  126 + ``chatter = 4``: detailed report about the task execution
126 127  
127 128 ``(clobber = yes) [boolean]``
128 129 Specifies whether an existing residual map file should be overwritten.
... ...
doc/source/users/reference_manual/cssens.rst
  View file @8bcf9b7
... ... @@ -106,15 +106,15 @@ Standard parameters
106 106  
107 107 ``(chatter = 2) [integer]``
108 108 Verbosity of the executable:
109   - chatter = 0: no information will be logged
  109 + ``chatter = 0``: no information will be logged
110 110  
111   - chatter = 1: only errors will be logged
  111 + ``chatter = 1``: only errors will be logged
112 112  
113   - chatter = 2: errors and actions will be logged
  113 + ``chatter = 2``: errors and actions will be logged
114 114  
115   - chatter = 3: report about the task execution
  115 + ``chatter = 3``: report about the task execution
116 116  
117   - chatter = 4: detailed report about the task execution
  117 + ``chatter = 4``: detailed report about the task execution
118 118  
119 119 ``(clobber = yes) [boolean]``
120 120 Specifies whether an existing output file should be overwritten.
... ...
doc/source/users/reference_manual/csspec.rst
  View file @8bcf9b7
... ... @@ -115,15 +115,15 @@ Standard parameters
115 115  
116 116 ``(chatter = 2) [integer]``
117 117 Verbosity of the executable:
118   - chatter = 0: no information will be logged
  118 + ``chatter = 0``: no information will be logged
119 119  
120   - chatter = 1: only errors will be logged
  120 + ``chatter = 1``: only errors will be logged
121 121  
122   - chatter = 2: errors and actions will be logged
  122 + ``chatter = 2``: errors and actions will be logged
123 123  
124   - chatter = 3: report about the task execution
  124 + ``chatter = 3``: report about the task execution
125 125  
126   - chatter = 4: detailed report about the task execution
  126 + ``chatter = 4``: detailed report about the task execution
127 127  
128 128 ``(clobber = yes) [boolean]``
129 129 Specifies whether an existing source spectrum output file should be overwritten.
... ...
doc/source/users/reference_manual/cssrcdetect.rst
  View file @8bcf9b7
... ... @@ -67,15 +67,15 @@ Standard parameters
67 67  
68 68 ``(chatter = 2) [integer]``
69 69 Verbosity of the executable:
70   - chatter = 0: no information will be logged
  70 + ``chatter = 0``: no information will be logged
71 71  
72   - chatter = 1: only errors will be logged
  72 + ``chatter = 1``: only errors will be logged
73 73  
74   - chatter = 2: errors and actions will be logged
  74 + ``chatter = 2``: errors and actions will be logged
75 75  
76   - chatter = 3: report about the task execution
  76 + ``chatter = 3``: report about the task execution
77 77  
78   - chatter = 4: detailed report about the task execution
  78 + ``chatter = 4``: detailed report about the task execution
79 79  
80 80 ``(clobber = yes) [boolean]``
81 81 Specifies whether an existing output model file should be overwritten.
... ...
doc/source/users/reference_manual/cstsdist.rst
  View file @8bcf9b7
... ... @@ -117,15 +117,15 @@ Standard parameters
117 117  
118 118 ``(chatter = 2) [integer]``
119 119 Verbosity of the executable:
120   - chatter = 0: no information will be logged
  120 + ``chatter = 0``: no information will be logged
121 121  
122   - chatter = 1: only errors will be logged
  122 + ``chatter = 1``: only errors will be logged
123 123  
124   - chatter = 2: errors and actions will be logged
  124 + ``chatter = 2``: errors and actions will be logged
125 125  
126   - chatter = 3: report about the task execution
  126 + ``chatter = 3``: report about the task execution
127 127  
128   - chatter = 4: detailed report about the task execution
  128 + ``chatter = 4``: detailed report about the task execution
129 129  
130 130 ``(clobber = yes) [boolean]``
131 131 Specifies whether an existing output file should be overwritten.
... ...
doc/source/users/reference_manual/cstsmapmerge.rst
  View file @8bcf9b7
... ... @@ -44,15 +44,15 @@ Standard parameters
44 44  
45 45 ``(chatter = 2) [integer]``
46 46 Verbosity of the executable:
47   - chatter = 0: no information will be logged
  47 + ``chatter = 0``: no information will be logged
48 48  
49   - chatter = 1: only errors will be logged
  49 + ``chatter = 1``: only errors will be logged
50 50  
51   - chatter = 2: errors and actions will be logged
  51 + ``chatter = 2``: errors and actions will be logged
52 52  
53   - chatter = 3: report about the task execution
  53 + ``chatter = 3``: report about the task execution
54 54  
55   - chatter = 4: detailed report about the task execution
  55 + ``chatter = 4``: detailed report about the task execution
56 56  
57 57 ``(clobber = yes) [boolean]``
58 58 Specifies whether an existing output TS map file should be overwritten.
... ...
doc/source/users/reference_manual/cstsmapsplit.rst
  View file @8bcf9b7
... ... @@ -95,15 +95,15 @@ Standard parameters
95 95  
96 96 ``(chatter = 2) [integer]``
97 97 Verbosity of the executable:
98   - chatter = 0: no information will be logged
  98 + ``chatter = 0``: no information will be logged
99 99  
100   - chatter = 1: only errors will be logged
  100 + ``chatter = 1``: only errors will be logged
101 101  
102   - chatter = 2: errors and actions will be logged
  102 + ``chatter = 2``: errors and actions will be logged
103 103  
104   - chatter = 3: report about the task execution
  104 + ``chatter = 3``: report about the task execution
105 105  
106   - chatter = 4: detailed report about the task execution
  106 + ``chatter = 4``: detailed report about the task execution
107 107  
108 108 ``(clobber = yes) [boolean]``
109 109 Specifies whether an existing output TS map file should be overwritten.
... ...
doc/source/users/reference_manual/csviscube.rst
  View file @8bcf9b7
... ... @@ -63,15 +63,15 @@ Standard parameters
63 63  
64 64 ``(chatter = 2) [integer]``
65 65 Verbosity of the executable:
66   - chatter = 0: no information will be logged
  66 + ``chatter = 0``: no information will be logged
67 67  
68   - chatter = 1: only errors will be logged
  68 + ``chatter = 1``: only errors will be logged
69 69  
70   - chatter = 2: errors and actions will be logged
  70 + ``chatter = 2``: errors and actions will be logged
71 71  
72   - chatter = 3: report about the task execution
  72 + ``chatter = 3``: report about the task execution
73 73  
74   - chatter = 4: detailed report about the task execution
  74 + ``chatter = 4``: detailed report about the task execution
75 75  
76 76 ``(clobber = yes) [boolean]``
77 77 Specifies whether an existing visibility cube file should be overwritten.
... ...
doc/source/users/reference_manual/ctbin.rst
  View file @8bcf9b7
... ... @@ -83,15 +83,15 @@ Standard parameters
83 83  
84 84 ``(chatter = 2) [integer]``
85 85 Verbosity of the executable:
86   - chatter = 0: no information will be logged
  86 + ``chatter = 0``: no information will be logged
87 87  
88   - chatter = 1: only errors will be logged
  88 + ``chatter = 1``: only errors will be logged
89 89  
90   - chatter = 2: errors and actions will be logged
  90 + ``chatter = 2``: errors and actions will be logged
91 91  
92   - chatter = 3: report about the task execution
  92 + ``chatter = 3``: report about the task execution
93 93  
94   - chatter = 4: detailed report about the task execution
  94 + ``chatter = 4``: detailed report about the task execution
95 95  
96 96 ``(clobber = yes) [boolean]``
97 97 Specifies whether an existing output counts cube file should be overwritten.
... ...
doc/source/users/reference_manual/ctbkgcube.rst
  View file @8bcf9b7
... ... @@ -123,15 +123,15 @@ Standard parameters
123 123  
124 124 ``(chatter = 2) [integer]``
125 125 Verbosity of the executable:
126   - chatter = 0: no information will be logged
  126 + ``chatter = 0``: no information will be logged
127 127  
128   - chatter = 1: only errors will be logged
  128 + ``chatter = 1``: only errors will be logged
129 129  
130   - chatter = 2: errors and actions will be logged
  130 + ``chatter = 2``: errors and actions will be logged
131 131  
132   - chatter = 3: report about the task execution
  132 + ``chatter = 3``: report about the task execution
133 133  
134   - chatter = 4: detailed report about the task execution
  134 + ``chatter = 4``: detailed report about the task execution
135 135  
136 136 ``(clobber = yes) [boolean]``
137 137 Specifies whether an existing output background cube file should be overwritten.
... ...
doc/source/users/reference_manual/ctbutterfly.rst
  View file @8bcf9b7
... ... @@ -107,15 +107,15 @@ Standard parameters
107 107  
108 108 ``(chatter = 2) [integer]``
109 109 Verbosity of the executable:
110   - chatter = 0: no information will be logged
  110 + ``chatter = 0``: no information will be logged
111 111  
112   - chatter = 1: only errors will be logged
  112 + ``chatter = 1``: only errors will be logged
113 113  
114   - chatter = 2: errors and actions will be logged
  114 + ``chatter = 2``: errors and actions will be logged
115 115  
116   - chatter = 3: report about the task execution
  116 + ``chatter = 3``: report about the task execution
117 117  
118   - chatter = 4: detailed report about the task execution
  118 + ``chatter = 4``: detailed report about the task execution
119 119  
120 120 ``(clobber = yes) [boolean]``
121 121 Specifies whether an existing output file should be overwritten.
... ...
doc/source/users/reference_manual/ctcubemask.rst
  View file @8bcf9b7
... ... @@ -74,15 +74,15 @@ Standard parameters
74 74  
75 75 ``(chatter = 2) [integer]``
76 76 Verbosity of the executable:
77   - chatter = 0: no information will be logged
  77 + ``chatter = 0``: no information will be logged
78 78  
79   - chatter = 1: only errors will be logged
  79 + ``chatter = 1``: only errors will be logged
80 80  
81   - chatter = 2: errors and actions will be logged
  81 + ``chatter = 2``: errors and actions will be logged
82 82  
83   - chatter = 3: report about the task execution
  83 + ``chatter = 3``: report about the task execution
84 84  
85   - chatter = 4: detailed report about the task execution
  85 + ``chatter = 4``: detailed report about the task execution
86 86  
87 87 ``(clobber = yes) [boolean]``
88 88 Specifies whether an existing output counts cube file should be overwritten.
... ...
doc/source/users/reference_manual/ctedispcube.rst
  View file @8bcf9b7
... ... @@ -109,15 +109,15 @@ Standard parameters
109 109  
110 110 ``(chatter = 2) [integer]``
111 111 Verbosity of the executable:
112   - chatter = 0: no information will be logged
  112 + ``chatter = 0``: no information will be logged
113 113  
114   - chatter = 1: only errors will be logged
  114 + ``chatter = 1``: only errors will be logged
115 115  
116   - chatter = 2: errors and actions will be logged
  116 + ``chatter = 2``: errors and actions will be logged
117 117  
118   - chatter = 3: report about the task execution
  118 + ``chatter = 3``: report about the task execution
119 119  
120   - chatter = 4: detailed report about the task execution
  120 + ``chatter = 4``: detailed report about the task execution
121 121  
122 122 ``(clobber = yes) [boolean]``
123 123 Specifies whether an existing output energy dispersion cube file should be overwritten.
... ...
doc/source/users/reference_manual/cterror.rst
  View file @8bcf9b7
... ... @@ -74,15 +74,15 @@ Standard parameters
74 74  
75 75 ``(chatter = 2) [integer]``
76 76 Verbosity of the executable:
77   - chatter = 0: no information will be logged
  77 + ``chatter = 0``: no information will be logged
78 78  
79   - chatter = 1: only errors will be logged
  79 + ``chatter = 1``: only errors will be logged
80 80  
81   - chatter = 2: errors and actions will be logged
  81 + ``chatter = 2``: errors and actions will be logged
82 82  
83   - chatter = 3: report about the task execution
  83 + ``chatter = 3``: report about the task execution
84 84  
85   - chatter = 4: detailed report about the task execution
  85 + ``chatter = 4``: detailed report about the task execution
86 86  
87 87 ``(clobber = yes) [boolean]``
88 88 Specifies whether an existing output file should be overwritten.
... ...
doc/source/users/reference_manual/ctexpcube.rst
  View file @8bcf9b7
... ... @@ -113,15 +113,15 @@ Standard parameters
113 113  
114 114 ``(chatter = 2) [integer]``
115 115 Verbosity of the executable:
116   - chatter = 0: no information will be logged
  116 + ``chatter = 0``: no information will be logged
117 117  
118   - chatter = 1: only errors will be logged
  118 + ``chatter = 1``: only errors will be logged
119 119  
120   - chatter = 2: errors and actions will be logged
  120 + ``chatter = 2``: errors and actions will be logged
121 121  
122   - chatter = 3: report about the task execution
  122 + ``chatter = 3``: report about the task execution
123 123  
124   - chatter = 4: detailed report about the task execution
  124 + ``chatter = 4``: detailed report about the task execution
125 125  
126 126 ``(clobber = yes) [boolean]``
127 127 Specifies whether an existing output exposure cube file should be overwritten.
... ...
doc/source/users/reference_manual/ctlike.rst
  View file @8bcf9b7
... ... @@ -106,15 +106,15 @@ Standard parameters
106 106  
107 107 ``(chatter = 2) [integer]``
108 108 Verbosity of the executable:
109   - chatter = 0: no information will be logged
  109 + ``chatter = 0``: no information will be logged
110 110  
111   - chatter = 1: only errors will be logged
  111 + ``chatter = 1``: only errors will be logged
112 112  
113   - chatter = 2: errors and actions will be logged
  113 + ``chatter = 2``: errors and actions will be logged
114 114  
115   - chatter = 3: report about the task execution
  115 + ``chatter = 3``: report about the task execution
116 116  
117   - chatter = 4: detailed report about the task execution
  117 + ``chatter = 4``: detailed report about the task execution
118 118  
119 119 ``(clobber = yes) [boolean]``
120 120 Specifies whether an existing output model file should be overwritten.
... ...
doc/source/users/reference_manual/ctmapcube.rst
  View file @8bcf9b7
... ... @@ -79,15 +79,15 @@ Standard parameters
79 79  
80 80 ``(chatter = 2) [integer]``
81 81 Verbosity of the executable:
82   - chatter = 0: no information will be logged
  82 + ``chatter = 0``: no information will be logged
83 83  
84   - chatter = 1: only errors will be logged
  84 + ``chatter = 1``: only errors will be logged
85 85  
86   - chatter = 2: errors and actions will be logged
  86 + ``chatter = 2``: errors and actions will be logged
87 87  
88   - chatter = 3: report about the task execution
  88 + ``chatter = 3``: report about the task execution
89 89  
90   - chatter = 4: detailed report about the task execution
  90 + ``chatter = 4``: detailed report about the task execution
91 91  
92 92 ``(clobber = yes) [boolean]``
93 93 Specifies whether an existing output counts cube file should be overwritten.
... ...
doc/source/users/reference_manual/ctmodel.rst
  View file @8bcf9b7
... ... @@ -143,15 +143,15 @@ Standard parameters
143 143  
144 144 ``(chatter = 2) [integer]``
145 145 Verbosity of the executable:
146   - chatter = 0: no information will be logged
  146 + ``chatter = 0``: no information will be logged
147 147  
148   - chatter = 1: only errors will be logged
  148 + ``chatter = 1``: only errors will be logged
149 149  
150   - chatter = 2: errors and actions will be logged
  150 + ``chatter = 2``: errors and actions will be logged
151 151  
152   - chatter = 3: report about the task execution
  152 + ``chatter = 3``: report about the task execution
153 153  
154   - chatter = 4: detailed report about the task execution
  154 + ``chatter = 4``: detailed report about the task execution
155 155  
156 156 ``(clobber = yes) [boolean]``
157 157 Specifies whether an existing output model cube file should be overwritten.
... ...
doc/source/users/reference_manual/ctobssim.rst
  View file @8bcf9b7
... ... @@ -114,15 +114,15 @@ Standard parameters
114 114  
115 115 ``(chatter = 2) [integer]``
116 116 Verbosity of the executable:
117   - chatter = 0: no information will be logged
  117 + ``chatter = 0``: no information will be logged
118 118  
119   - chatter = 1: only errors will be logged
  119 + ``chatter = 1``: only errors will be logged
120 120  
121   - chatter = 2: errors and actions will be logged
  121 + ``chatter = 2``: errors and actions will be logged
122 122  
123   - chatter = 3: report about the task execution
  123 + ``chatter = 3``: report about the task execution
124 124  
125   - chatter = 4: detailed report about the task execution
  125 + ``chatter = 4``: detailed report about the task execution
126 126  
127 127 ``(clobber = yes) [boolean]``
128 128 Specifies whether existing files should be overwritten.
... ...
doc/source/users/reference_manual/ctphase.rst
  View file @8bcf9b7
... ... @@ -63,15 +63,15 @@ Standard parameters
63 63  
64 64 ``(chatter = 2) [integer]``
65 65 Verbosity of the executable:
66   - chatter = 0: no information will be logged
  66 + ``chatter = 0``: no information will be logged
67 67  
68   - chatter = 1: only errors will be logged
  68 + ``chatter = 1``: only errors will be logged
69 69  
70   - chatter = 2: errors and actions will be logged
  70 + ``chatter = 2``: errors and actions will be logged
71 71  
72   - chatter = 3: report about the task execution
  72 + ``chatter = 3``: report about the task execution
73 73  
74   - chatter = 4: detailed report about the task execution
  74 + ``chatter = 4``: detailed report about the task execution
75 75  
76 76 ``(clobber = yes) [boolean]``
77 77 Specifies whether existing output files should be overwritten.
... ...
doc/source/users/reference_manual/ctprob.rst
  View file @8bcf9b7
... ... @@ -50,15 +50,15 @@ Standard parameters
50 50  
51 51 ``(chatter = 2) [integer]``
52 52 Verbosity of the executable:
53   - chatter = 0: no information will be logged
  53 + ``chatter = 0``: no information will be logged
54 54  
55   - chatter = 1: only errors will be logged
  55 + ``chatter = 1``: only errors will be logged
56 56  
57   - chatter = 2: errors and actions will be logged
  57 + ``chatter = 2``: errors and actions will be logged
58 58  
59   - chatter = 3: report about the task execution
  59 + ``chatter = 3``: report about the task execution
60 60  
61   - chatter = 4: detailed report about the task execution
  61 + ``chatter = 4``: detailed report about the task execution
62 62  
63 63 ``(clobber = yes) [boolean]``
64 64 Specifies whether existing output files should be overwritten.
... ...
doc/source/users/reference_manual/ctpsfcube.rst
  View file @8bcf9b7
... ... @@ -109,15 +109,15 @@ Standard parameters
109 109  
110 110 ``(chatter = 2) [integer]``
111 111 Verbosity of the executable:
112   - chatter = 0: no information will be logged
  112 + ``chatter = 0``: no information will be logged
113 113  
114   - chatter = 1: only errors will be logged
  114 + ``chatter = 1``: only errors will be logged
115 115  
116   - chatter = 2: errors and actions will be logged
  116 + ``chatter = 2``: errors and actions will be logged
117 117  
118   - chatter = 3: report about the task execution
  118 + ``chatter = 3``: report about the task execution
119 119  
120   - chatter = 4: detailed report about the task execution
  120 + ``chatter = 4``: detailed report about the task execution
121 121  
122 122 ``(clobber = yes) [boolean]``
123 123 Specifies whether an existing output point spread function cube file should be overwritten.
... ...
doc/source/users/reference_manual/ctselect.rst
  View file @8bcf9b7
... ... @@ -109,15 +109,15 @@ Standard parameters
109 109  
110 110 ``(chatter = 2) [integer]``
111 111 Verbosity of the executable:
112   - chatter = 0: no information will be logged
  112 + ``chatter = 0``: no information will be logged
113 113  
114   - chatter = 1: only errors will be logged
  114 + ``chatter = 1``: only errors will be logged
115 115  
116   - chatter = 2: errors and actions will be logged
  116 + ``chatter = 2``: errors and actions will be logged
117 117  
118   - chatter = 3: report about the task execution
  118 + ``chatter = 3``: report about the task execution
119 119  
120   - chatter = 4: detailed report about the task execution
  120 + ``chatter = 4``: detailed report about the task execution
121 121  
122 122 ``(clobber = yes) [boolean]``
123 123 Specifies whether existing output files should be overwritten.
... ...
doc/source/users/reference_manual/ctskymap.rst
  View file @8bcf9b7
... ... @@ -86,15 +86,15 @@ Standard parameters
86 86  
87 87 ``(chatter = 2) [integer]``
88 88 Verbosity of the executable:
89   - chatter = 0: no information will be logged
  89 + ``chatter = 0``: no information will be logged
90 90  
91   - chatter = 1: only errors will be logged
  91 + ``chatter = 1``: only errors will be logged
92 92  
93   - chatter = 2: errors and actions will be logged
  93 + ``chatter = 2``: errors and actions will be logged
94 94  
95   - chatter = 3: report about the task execution
  95 + ``chatter = 3``: report about the task execution
96 96  
97   - chatter = 4: detailed report about the task execution
  97 + ``chatter = 4``: detailed report about the task execution
98 98  
99 99 ``(clobber = yes) [boolean]``
100 100 Specifies whether an existing output sky map file should be overwritten.
... ...
doc/source/users/reference_manual/cttsmap.rst
  View file @8bcf9b7
... ... @@ -105,15 +105,15 @@ Standard parameters
105 105  
106 106 ``(chatter = 2) [integer]``
107 107 Verbosity of the executable:
108   - chatter = 0: no information will be logged
  108 + ``chatter = 0``: no information will be logged
109 109  
110   - chatter = 1: only errors will be logged
  110 + ``chatter = 1``: only errors will be logged
111 111  
112   - chatter = 2: errors and actions will be logged
  112 + ``chatter = 2``: errors and actions will be logged
113 113  
114   - chatter = 3: report about the task execution
  114 + ``chatter = 3``: report about the task execution
115 115  
116   - chatter = 4: detailed report about the task execution
  116 + ``chatter = 4``: detailed report about the task execution
117 117  
118 118 ``(clobber = yes) [boolean]``
119 119 Specifies whether an existing output TS map file should be overwritten.
... ...
doc/source/users/reference_manual/ctulimit.rst
  View file @8bcf9b7
... ... @@ -86,15 +86,15 @@ Standard parameters
86 86  
87 87 ``(chatter = 2) [integer]``
88 88 Verbosity of the executable:
89   - chatter = 0: no information will be logged
  89 + ``chatter = 0``: no information will be logged
90 90  
91   - chatter = 1: only errors will be logged
  91 + ``chatter = 1``: only errors will be logged
92 92  
93   - chatter = 2: errors and actions will be logged
  93 + ``chatter = 2``: errors and actions will be logged
94 94  
95   - chatter = 3: report about the task execution
  95 + ``chatter = 3``: report about the task execution
96 96  
97   - chatter = 4: detailed report about the task execution
  97 + ``chatter = 4``: detailed report about the task execution
98 98  
99 99 ``(clobber = yes) [boolean]``
100 100 Specifies whether an existing output file should be overwritten.
... ...