Commit 92c018a72107f75eef8082c9df29a93ae1b711e5
Merge branch 'devel' of https://cta-gitlab.irap.omp.eu/ctools/ctools into devel
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ChangeLog
| 1 | -2018-01-25 | 1 | +2018-02-14 |
| 2 | + | ||
| 3 | + * Version 1.6.0 released | ||
| 4 | + ======================== | ||
| 5 | + | ||
| 6 | + Allow specifying of input sky map in ctskymap (#2311) | ||
| 7 | + Add ras() and decs() methods to csobsinfo (#2313) | ||
| 8 | + Accelerate IRF and RING background methods in ctskymap (#2309) | ||
| 9 | + | ||
| 10 | + | ||
| 11 | +2018-02-16 | ||
| 12 | + | ||
| 13 | + * Bug fix version 1.5.1 released | ||
| 14 | + ================================ | ||
| 15 | + | ||
| 16 | + Take energy dispersion in csresspec modelling into account (#2341) | ||
| 17 | + Enable using csphagen for HESS, VERITAS and MAGIC observations (#2307) | ||
| 18 | + | ||
| 2 | 19 | ||
| 3 | * Version 1.5.0 released | 20 | * Version 1.5.0 released |
| 4 | ======================== | 21 | ======================== |
NEWS
| 1 | -25 January 2018 | 1 | +New Features and Important Changes in ctools 1.6.0 |
| 2 | + | ||
| 3 | +14 February 2018 | ||
| 2 | 4 | ||
| 3 | 5 | ||
| 4 | Introduction | 6 | Introduction |
| @@ -9,10 +11,7 @@ ctools release with respect to the precedent release. | @@ -9,10 +11,7 @@ ctools release with respect to the precedent release. | ||
| 9 | 11 | ||
| 10 | Configuration | 12 | Configuration |
| 11 | ------------- | 13 | ------------- |
| 12 | -In case of an error, test output is now written into log file (#2264). | ||
| 13 | - | ||
| 14 | -The cscripts::execute() method no longer creates log files, making the | ||
| 15 | -cscripts behaviour compliant with that of ctools (#2182). | 14 | +None |
| 16 | 15 | ||
| 17 | 16 | ||
| 18 | Python interface | 17 | Python interface |
| @@ -27,8 +26,7 @@ None | @@ -27,8 +26,7 @@ None | ||
| 27 | 26 | ||
| 28 | Base classes | 27 | Base classes |
| 29 | ------------ | 28 | ------------ |
| 30 | -Add ctools::time_reference constant and remove ctools::time_reference() method | ||
| 31 | -(#2295). | 29 | +None |
| 32 | 30 | ||
| 33 | 31 | ||
| 34 | ctbin - CTA event binning | 32 | ctbin - CTA event binning |
| @@ -43,9 +41,7 @@ None | @@ -43,9 +41,7 @@ None | ||
| 43 | 41 | ||
| 44 | ctbutterfly - Generate butterfly diagrams | 42 | ctbutterfly - Generate butterfly diagrams |
| 45 | ----------------------------------------- | 43 | ----------------------------------------- |
| 46 | -Add "statistic" parameter to allow setting of optimizer statistic (#2237). | ||
| 47 | - | ||
| 48 | -Add butterfly() method to return the butterfly diagram as CSV object (#1512). | 44 | +None |
| 49 | 45 | ||
| 50 | 46 | ||
| 51 | ctcubemask - CTA cube filtering | 47 | ctcubemask - CTA cube filtering |
| @@ -60,7 +56,7 @@ None | @@ -60,7 +56,7 @@ None | ||
| 60 | 56 | ||
| 61 | cterror - Likelihood profile error computation | 57 | cterror - Likelihood profile error computation |
| 62 | ---------------------------------------------- | 58 | ---------------------------------------------- |
| 63 | -Add "statistic" parameter to allow setting of optimizer statistic (#2237). | 59 | +None |
| 64 | 60 | ||
| 65 | 61 | ||
| 66 | ctexpcube - CTA exposure cube generation | 62 | ctexpcube - CTA exposure cube generation |
| @@ -70,7 +66,7 @@ None | @@ -70,7 +66,7 @@ None | ||
| 70 | 66 | ||
| 71 | ctlike - Maximum likelihood fitting | 67 | ctlike - Maximum likelihood fitting |
| 72 | ----------------------------------- | 68 | ----------------------------------- |
| 73 | -Rename "stats" parameter to "statistic" (#2237). | 69 | +None |
| 74 | 70 | ||
| 75 | 71 | ||
| 76 | ctmapcube - CTA map cube generation | 72 | ctmapcube - CTA map cube generation |
| @@ -80,22 +76,12 @@ None | @@ -80,22 +76,12 @@ None | ||
| 80 | 76 | ||
| 81 | ctmodel - CTA counts cube modelling | 77 | ctmodel - CTA counts cube modelling |
| 82 | ----------------------------------- | 78 | ----------------------------------- |
| 83 | -Use t-type parameters for "tmin" and "tmax" to all specifying times in various | ||
| 84 | -formats (#1864). | ||
| 85 | - | ||
| 86 | -The tool now also checks which models actually overlap with the RoI of a given | ||
| 87 | -observation and then only use these models to compute the model cube. The | ||
| 88 | -parallelization of the tool has also been optimised so that diffuse models are | ||
| 89 | -not loaded over and over again (#2189). | 79 | +None |
| 90 | 80 | ||
| 91 | 81 | ||
| 92 | ctobssim - CTA observation simulation | 82 | ctobssim - CTA observation simulation |
| 93 | ------------------------------------- | 83 | ------------------------------------- |
| 94 | -Use t-type parameters for "tmin" and "tmax" to all specifying times in various | ||
| 95 | -formats (#1864). | ||
| 96 | - | ||
| 97 | -Set the OBS_ID keyword to the number that is used for creating the FITS file | ||
| 98 | -(#1836). | 84 | +None |
| 99 | 85 | ||
| 100 | 86 | ||
| 101 | ctphase - Event phase computation | 87 | ctphase - Event phase computation |
| @@ -110,51 +96,47 @@ None | @@ -110,51 +96,47 @@ None | ||
| 110 | 96 | ||
| 111 | ctpsfcube - CTA point spread function cube generation | 97 | ctpsfcube - CTA point spread function cube generation |
| 112 | ----------------------------------------------------- | 98 | ----------------------------------------------------- |
| 113 | -The chatter level is now correctly forwarded to the PSF cube fill method (#2262). | 99 | +None |
| 114 | 100 | ||
| 115 | 101 | ||
| 116 | ctselect - CTA event selection | 102 | ctselect - CTA event selection |
| 117 | ------------------------------ | 103 | ------------------------------ |
| 118 | -Any .gz suffix is now correctly stripped from the event filenames when creating | ||
| 119 | -the output filenames (#2287). | ||
| 120 | - | ||
| 121 | -ctselect now informs about non-overlapping time interval; before the time interval | ||
| 122 | -was set to [0,0] which was disturbing and eventually incorrect (#2272). | ||
| 123 | - | ||
| 124 | -Use t-type parameters for "tmin" and "tmax" to all specifying times in various | ||
| 125 | -formats (#1864). | 104 | +None |
| 126 | 105 | ||
| 127 | 106 | ||
| 128 | ctskymap - CTA sky mapping | 107 | ctskymap - CTA sky mapping |
| 129 | -------------------------- | 108 | -------------------------- |
| 130 | -Header keywords informing about the dates and times covered by the observations | ||
| 131 | -used to generate the skymap, as well as the event energy range, are now appended | ||
| 132 | -as header keywords to the FITS file (#2194). | ||
| 133 | - | ||
| 134 | -Add the RING background method, which is a classical analysis methods for IACT | ||
| 135 | -data analysis, for background subtraction (#2207). | 109 | +Add the "inmap", "iterations" and "threshold" parameters. The hidden |
| 110 | +"inmap" parameter allows specifying a sky map file containing a "COUNTS" | ||
| 111 | +and "ACCEPTANCE" extension which avoids looping over event lists in an | ||
| 112 | +observation container. The "iterations" parameter allows the iterative | ||
| 113 | +determination of an exclusion map from the resulting significance map for | ||
| 114 | +the RING background method. The exclusion map will flag all pixels with | ||
| 115 | +significances above the "threshold" value so that they will be excluded | ||
| 116 | +in the subsequent RING background determination. Since this will impact | ||
| 117 | +the pixel significances, the procedure needs to be repeated a couple of | ||
| 118 | +times to stabilise (#2311). | ||
| 119 | + | ||
| 120 | +Accelerate the IRF and RING background methods. For the RING background | ||
| 121 | +method the computation is either performed using a FFT or using a direct | ||
| 122 | +computation. The FFT computation is faster, but assumed Euclidian | ||
| 123 | +distances for the sky map grid, the direct computation is slower, but | ||
| 124 | +accurately computes the distances between sky map pixels (#2309). | ||
| 136 | 125 | ||
| 137 | 126 | ||
| 138 | cttsmap - Generation of Test Statistic map | 127 | cttsmap - Generation of Test Statistic map |
| 139 | ------------------------------------------ | 128 | ------------------------------------------ |
| 140 | -Add "statistic" parameter to allow setting of optimizer statistic (#2237). | 129 | +None |
| 141 | 130 | ||
| 142 | 131 | ||
| 143 | ctulimit - Compute upper limit | 132 | ctulimit - Compute upper limit |
| 144 | ------------------------------ | 133 | ------------------------------ |
| 145 | -The tool now also computes correct upper flux limits for diffuse map cubes | ||
| 146 | -for which the spectral component is a normalization of the spectral information | ||
| 147 | -available in the map cube (#2298). | ||
| 148 | - | ||
| 149 | -Add "statistic" parameter to allow setting of optimizer statistic (#2237). | 134 | +None |
| 150 | 135 | ||
| 151 | 136 | ||
| 152 | support - Support classes | 137 | support - Support classes |
| 153 | ------------------------- | 138 | ------------------------- |
| 154 | -Change DATE_OBS, DATE_END, TIME_OBS and TIME_END FITS keywords into DATA-OBS, | ||
| 155 | -DATE-END, TIME-OBS and TIME-END. | ||
| 156 | - | ||
| 157 | -Add ctobservation.obs() method to set an observation container. | 139 | +None |
| 158 | 140 | ||
| 159 | 141 | ||
| 160 | cscaldb - Inspect calibration database | 142 | cscaldb - Inspect calibration database |
| @@ -189,16 +171,7 @@ None | @@ -189,16 +171,7 @@ None | ||
| 189 | 171 | ||
| 190 | cslightcrv - Generate light curve | 172 | cslightcrv - Generate light curve |
| 191 | --------------------------------- | 173 | --------------------------------- |
| 192 | -The script now also supports the handling of On/Off observations. For that | ||
| 193 | -purpose parameters were added that are needed for the execution of the | ||
| 194 | -csphagen script (#2273). | ||
| 195 | - | ||
| 196 | -The script now derives from the csobservation base class. A "statistic" | ||
| 197 | -parameter was added to allow setting the optimizer statistic for the light | ||
| 198 | -curve generation (#2237). | ||
| 199 | - | ||
| 200 | -Use t-type parameters for "tmin" and "tmax" to all specifying times in various | ||
| 201 | -formats (#1864). | 174 | +None |
| 202 | 175 | ||
| 203 | 176 | ||
| 204 | csmodelinfo - Return model information | 177 | csmodelinfo - Return model information |
| @@ -218,8 +191,7 @@ None | @@ -218,8 +191,7 @@ None | ||
| 218 | 191 | ||
| 219 | csmodelsois - Puts selected sources in diffuse model cube | 192 | csmodelsois - Puts selected sources in diffuse model cube |
| 220 | --------------------------------------------------------- | 193 | --------------------------------------------------------- |
| 221 | -Add script that replaces selected models in a model container by a diffuse | ||
| 222 | -map cube (#2180). | 194 | +None |
| 223 | 195 | ||
| 224 | 196 | ||
| 225 | csobs2caldb - Generate calibration database entry for an IACT observation | 197 | csobs2caldb - Generate calibration database entry for an IACT observation |
| @@ -234,47 +206,27 @@ None | @@ -234,47 +206,27 @@ None | ||
| 234 | 206 | ||
| 235 | csobsinfo - Return observation definition information | 207 | csobsinfo - Return observation definition information |
| 236 | ----------------------------------------------------- | 208 | ----------------------------------------------------- |
| 237 | -None | 209 | +Add ras() and decs() methods (#2313) |
| 238 | 210 | ||
| 239 | 211 | ||
| 240 | csobsselect - Select observations | 212 | csobsselect - Select observations |
| 241 | --------------------------------- | 213 | --------------------------------- |
| 242 | -Add tmin and tmax parameters to allow selection of observation by time (#2297). | 214 | +None |
| 243 | 215 | ||
| 244 | 216 | ||
| 245 | csphagen - Generate On/Off observations | 217 | csphagen - Generate On/Off observations |
| 246 | --------------------------------------- | 218 | --------------------------------------- |
| 247 | -The CUSTOM background method was added to allow specifying On and Off regions | ||
| 248 | -from a region file or FITS WCS map. For multiple observations, a custom Off | ||
| 249 | -region per observation can be specified in the observation definition XML file | ||
| 250 | -using the OffRegions parameter (#2284). | ||
| 251 | - | ||
| 252 | -The script was added to allow the generation of PHA, ARF and RMF datasets for classical On/Off IACT analysis (#2208). | 219 | +None |
| 253 | 220 | ||
| 254 | 221 | ||
| 255 | csphasecrv - Generate phase curve | 222 | csphasecrv - Generate phase curve |
| 256 | --------------------------------- | 223 | --------------------------------- |
| 257 | -The script now also supports the handling of On/Off observations. For that | ||
| 258 | -purpose parameters were added that are needed for the execution of the | ||
| 259 | -csphagen script (#2273). | ||
| 260 | - | ||
| 261 | -The script now derives from the csobservation base class. A "statistic" | ||
| 262 | -parameter was added to allow setting the optimizer statistic for the light | ||
| 263 | -curve generation (#2237). | 224 | +None |
| 264 | 225 | ||
| 265 | 226 | ||
| 266 | cspull - Generate pull distributions | 227 | cspull - Generate pull distributions |
| 267 | ------------------------------------ | 228 | ------------------------------------ |
| 268 | -The script now handles On/Off observation. The parameters "onsrc" and "onrad" | ||
| 269 | -were added to allow specifying the On region test source and On region radius | ||
| 270 | -(#2260). | ||
| 271 | - | ||
| 272 | -The script now derives from the csobservation base class. A "statistic" | ||
| 273 | -parameter was added to allow setting the optimizer statistic for the pull | ||
| 274 | -distribution generation (#2237). | ||
| 275 | - | ||
| 276 | -Use t-type parameters for "tmin" and "tmax" to all specifying times in various | ||
| 277 | -formats (#1864). | 229 | +None |
| 278 | 230 | ||
| 279 | 231 | ||
| 280 | csresmap - Generate residual map | 232 | csresmap - Generate residual map |
| @@ -284,7 +236,7 @@ None | @@ -284,7 +236,7 @@ None | ||
| 284 | 236 | ||
| 285 | csresspec - Generate residual spectrum | 237 | csresspec - Generate residual spectrum |
| 286 | -------------------------------------- | 238 | -------------------------------------- |
| 287 | -Add script to generate a residual spectrum (#2289) | 239 | +None |
| 288 | 240 | ||
| 289 | 241 | ||
| 290 | csroot2caldb - Generates calibration database from ROOT file | 242 | csroot2caldb - Generates calibration database from ROOT file |
| @@ -294,25 +246,12 @@ None | @@ -294,25 +246,12 @@ None | ||
| 294 | 246 | ||
| 295 | cssens - Computes sensitivity curve | 247 | cssens - Computes sensitivity curve |
| 296 | ----------------------------------- | 248 | ----------------------------------- |
| 297 | -The script now derived from the csobservation base class. A "statistic" | ||
| 298 | -parameter was added to allow setting the optimizer statistic for the sensitivity | ||
| 299 | -computation (#2237). | 249 | +None |
| 300 | 250 | ||
| 301 | 251 | ||
| 302 | csspec - Generates Spectral Energy Distribution | 252 | csspec - Generates Spectral Energy Distribution |
| 303 | ----------------------------------------------- | 253 | ----------------------------------------------- |
| 304 | -The script now derives from the csobservation base class. A "statistic" | ||
| 305 | -parameter was added to allow setting the optimizer statistic for the spectrum | ||
| 306 | -generation (#2237). | ||
| 307 | - | ||
| 308 | -The script now can also handle On/Off spectra for SED generation (#2231). | ||
| 309 | - | ||
| 310 | -The script now can also handle non-CTA data. For that purpose a "method" | ||
| 311 | -parameter has been introduced that allows to selected between slicing of the data | ||
| 312 | -(method="SLICE"), which is only supported for CTA observations, and replacing of | ||
| 313 | -the spectral model by a node function (method="NODES"). If method="AUTO" the tool | ||
| 314 | -will use "SLICE" for observations containing only CTA data and "NODES" for observations | ||
| 315 | -containing other data (#1927). | 254 | +None |
| 316 | 255 | ||
| 317 | 256 | ||
| 318 | cssrcdetect - Detects sources in sky map | 257 | cssrcdetect - Detects sources in sky map |
| @@ -322,18 +261,7 @@ None | @@ -322,18 +261,7 @@ None | ||
| 322 | 261 | ||
| 323 | cstsdist - Computes Test Statistic distribution | 262 | cstsdist - Computes Test Statistic distribution |
| 324 | ----------------------------------------------- | 263 | ----------------------------------------------- |
| 325 | -The script now derives from the csobservation base class. A "statistic" | ||
| 326 | -parameter was added to allow setting the optimizer statistic for the Test | ||
| 327 | -Statistic distribution generation (#2237). | ||
| 328 | - | ||
| 329 | -The parameter interface was considerably revised, in particular the following | ||
| 330 | -parameters were removed: "ra", "dec", "rad", "coordsys", "proj", "emin", | ||
| 331 | -"emax", "enumbins", "tmin", "tmax", "npix" and "binsz". The "inobs" parameter | ||
| 332 | -is now always queried. The script now reads in an observation or an observation | ||
| 333 | -container and derives the TS distribution for a source based on that observation | ||
| 334 | -container. So far the script supports unbinned, binned and stacked observations. | ||
| 335 | -If an observation definition XML file is specified the script assumes that all | ||
| 336 | -observations are event lists (#1567). | 264 | +None |
| 337 | 265 | ||
| 338 | 266 | ||
| 339 | cstsmapmerge - Merge Test Statistic maps | 267 | cstsmapmerge - Merge Test Statistic maps |
| @@ -343,14 +271,12 @@ None | @@ -343,14 +271,12 @@ None | ||
| 343 | 271 | ||
| 344 | cstsmapsplit - Prepare split Test Statistic computation | 272 | cstsmapsplit - Prepare split Test Statistic computation |
| 345 | ------------------------------------------------------- | 273 | ------------------------------------------------------- |
| 346 | -A "statistic" parameter was added to allow setting the optimizer statistic for | ||
| 347 | -the TS map generation (#2237). | 274 | +None |
| 348 | 275 | ||
| 349 | 276 | ||
| 350 | csviscube - Generate visibility cube | 277 | csviscube - Generate visibility cube |
| 351 | ------------------------------------ | 278 | ------------------------------------ |
| 352 | -Use t-type parameters for "tmin" and "tmax" to all specifying times in various | ||
| 353 | -formats (#1864). | 279 | +None |
| 354 | 280 | ||
| 355 | 281 | ||
| 356 | csworkflow - Execute workflow | 282 | csworkflow - Execute workflow |
README.md
| 1 | ctools information | 1 | ctools information |
| 2 | ================== | 2 | ================== |
| 3 | -* Version: 1.6.0.dev1 (1 August 2017) | 3 | +* Version: 1.6.0.dev1 |
| 4 | * Author: Juergen Knoedlseder (jurgen.knodlseder@irap.omp.eu) | 4 | * Author: Juergen Knoedlseder (jurgen.knodlseder@irap.omp.eu) |
| 5 | * GammaLib dependency: 1.6.0.dev1 | 5 | * GammaLib dependency: 1.6.0.dev1 |
| 6 | 6 |
caldb/data/cta/prod2/bcf/North_0.5h/irf_file.fits.gz
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cscripts/csobsinfo.py
| @@ -59,11 +59,11 @@ class csobsinfo(ctools.csobservation): | @@ -59,11 +59,11 @@ class csobsinfo(ctools.csobservation): | ||
| 59 | """ | 59 | """ |
| 60 | Get parameters from parfile and setup the observation | 60 | Get parameters from parfile and setup the observation |
| 61 | """ | 61 | """ |
| 62 | - # Get parameters | 62 | + # Get parameters |
| 63 | if self.obs().size() == 0: | 63 | if self.obs().size() == 0: |
| 64 | self._require_inobs('csobsinfo::get_parameters') | 64 | self._require_inobs('csobsinfo::get_parameters') |
| 65 | self.obs(self._get_observations(False)) | 65 | self.obs(self._get_observations(False)) |
| 66 | - | 66 | + |
| 67 | # Initialise object position | 67 | # Initialise object position |
| 68 | self._obj_dir = gammalib.GSkyDir() | 68 | self._obj_dir = gammalib.GSkyDir() |
| 69 | 69 | ||
| @@ -83,7 +83,7 @@ class csobsinfo(ctools.csobservation): | @@ -83,7 +83,7 @@ class csobsinfo(ctools.csobservation): | ||
| 83 | 83 | ||
| 84 | # Return | 84 | # Return |
| 85 | return | 85 | return |
| 86 | - | 86 | + |
| 87 | 87 | ||
| 88 | # Public methods | 88 | # Public methods |
| 89 | def run(self): | 89 | def run(self): |
| @@ -96,7 +96,7 @@ class csobsinfo(ctools.csobservation): | @@ -96,7 +96,7 @@ class csobsinfo(ctools.csobservation): | ||
| 96 | 96 | ||
| 97 | # Get parameters | 97 | # Get parameters |
| 98 | self._get_parameters() | 98 | self._get_parameters() |
| 99 | - | 99 | + |
| 100 | # Initialise arrays to store certain values for reuse | 100 | # Initialise arrays to store certain values for reuse |
| 101 | # Todo, think about using a python dictionary | 101 | # Todo, think about using a python dictionary |
| 102 | self._offsets = [] | 102 | self._offsets = [] |
| @@ -107,7 +107,7 @@ class csobsinfo(ctools.csobservation): | @@ -107,7 +107,7 @@ class csobsinfo(ctools.csobservation): | ||
| 107 | self._ebounds = gammalib.GEbounds() | 107 | self._ebounds = gammalib.GEbounds() |
| 108 | self._gti = gammalib.GGti() | 108 | self._gti = gammalib.GGti() |
| 109 | obs_names = [] | 109 | obs_names = [] |
| 110 | - | 110 | + |
| 111 | # Initialise output to be filled | 111 | # Initialise output to be filled |
| 112 | ontime = 0.0 | 112 | ontime = 0.0 |
| 113 | livetime = 0.0 | 113 | livetime = 0.0 |
| @@ -115,12 +115,12 @@ class csobsinfo(ctools.csobservation): | @@ -115,12 +115,12 @@ class csobsinfo(ctools.csobservation): | ||
| 115 | n_eventbins = 0 | 115 | n_eventbins = 0 |
| 116 | n_obs_binned = 0 | 116 | n_obs_binned = 0 |
| 117 | n_obs_unbinned = 0 | 117 | n_obs_unbinned = 0 |
| 118 | - | 118 | + |
| 119 | # Write header | 119 | # Write header |
| 120 | if self._logTerse(): | 120 | if self._logTerse(): |
| 121 | self._log('\n') | 121 | self._log('\n') |
| 122 | self._log.header1(gammalib.number('Observation', self.obs().size())) | 122 | self._log.header1(gammalib.number('Observation', self.obs().size())) |
| 123 | - | 123 | + |
| 124 | # Loop over observations | 124 | # Loop over observations |
| 125 | for obs in self.obs(): | 125 | for obs in self.obs(): |
| 126 | 126 | ||
| @@ -128,44 +128,44 @@ class csobsinfo(ctools.csobservation): | @@ -128,44 +128,44 @@ class csobsinfo(ctools.csobservation): | ||
| 128 | if not obs.classname() == 'GCTAObservation': | 128 | if not obs.classname() == 'GCTAObservation': |
| 129 | self._log('Skipping '+obs.instrument()+' observation\n') | 129 | self._log('Skipping '+obs.instrument()+' observation\n') |
| 130 | continue | 130 | continue |
| 131 | - | 131 | + |
| 132 | # Use observed object as observation name if name is not given | 132 | # Use observed object as observation name if name is not given |
| 133 | obs_name = obs.name() | 133 | obs_name = obs.name() |
| 134 | if obs_name == '': | 134 | if obs_name == '': |
| 135 | obs_name = obs.object() | 135 | obs_name = obs.object() |
| 136 | - | 136 | + |
| 137 | # Logging | 137 | # Logging |
| 138 | if self._logExplicit(): | 138 | if self._logExplicit(): |
| 139 | self._log.header2(obs_name) | 139 | self._log.header2(obs_name) |
| 140 | - | 140 | + |
| 141 | # Retrieve observation name | 141 | # Retrieve observation name |
| 142 | obs_names.append(obs_name) | 142 | obs_names.append(obs_name) |
| 143 | - | 143 | + |
| 144 | # Retrieve energy boundaries | 144 | # Retrieve energy boundaries |
| 145 | obs_bounds = obs.events().ebounds() | 145 | obs_bounds = obs.events().ebounds() |
| 146 | - | 146 | + |
| 147 | # Retrieve time interval | 147 | # Retrieve time interval |
| 148 | obs_gti = obs.events().gti() | 148 | obs_gti = obs.events().gti() |
| 149 | - | 149 | + |
| 150 | # Compute mean time and dead time fraction in percent | 150 | # Compute mean time and dead time fraction in percent |
| 151 | deadfrac = (1.0-obs.deadc())*100.0 | 151 | deadfrac = (1.0-obs.deadc())*100.0 |
| 152 | - | 152 | + |
| 153 | # Retrieve pointing and store Ra,Dec | 153 | # Retrieve pointing and store Ra,Dec |
| 154 | - pnt_dir = obs.pointing().dir() | 154 | + pnt_dir = obs.pointing().dir() |
| 155 | self._pnt_ra.append(pnt_dir.ra_deg()) | 155 | self._pnt_ra.append(pnt_dir.ra_deg()) |
| 156 | - self._pnt_dec.append(pnt_dir.dec_deg()) | ||
| 157 | - | 156 | + self._pnt_dec.append(pnt_dir.dec_deg()) |
| 157 | + | ||
| 158 | # If avaliable append energy boundaries | 158 | # If avaliable append energy boundaries |
| 159 | if obs_bounds.size() > 0 : | 159 | if obs_bounds.size() > 0 : |
| 160 | self._ebounds.append(obs_bounds.emin(),obs_bounds.emax()) | 160 | self._ebounds.append(obs_bounds.emin(),obs_bounds.emax()) |
| 161 | - | 161 | + |
| 162 | # Append time interval | 162 | # Append time interval |
| 163 | self._gti.append(obs_gti.tstart(), obs_gti.tstop()) | 163 | self._gti.append(obs_gti.tstart(), obs_gti.tstop()) |
| 164 | - | 164 | + |
| 165 | # Increment global livetime and ontime | 165 | # Increment global livetime and ontime |
| 166 | ontime += obs.ontime() | 166 | ontime += obs.ontime() |
| 167 | livetime += obs.livetime() | 167 | livetime += obs.livetime() |
| 168 | - | 168 | + |
| 169 | # Bookkeeping | 169 | # Bookkeeping |
| 170 | if obs.eventtype() == 'CountsCube': | 170 | if obs.eventtype() == 'CountsCube': |
| 171 | n_eventbins += obs.events().size() | 171 | n_eventbins += obs.events().size() |
| @@ -190,10 +190,10 @@ class csobsinfo(ctools.csobservation): | @@ -190,10 +190,10 @@ class csobsinfo(ctools.csobservation): | ||
| 190 | if self._compute_offset: | 190 | if self._compute_offset: |
| 191 | offset = pnt_dir.dist_deg(self._obj_dir) | 191 | offset = pnt_dir.dist_deg(self._obj_dir) |
| 192 | self._offsets.append(offset) | 192 | self._offsets.append(offset) |
| 193 | - | 193 | + |
| 194 | # Optionally log details | 194 | # Optionally log details |
| 195 | if self._logExplicit(): | 195 | if self._logExplicit(): |
| 196 | - | 196 | + |
| 197 | # Log the observation energy range (if available) | 197 | # Log the observation energy range (if available) |
| 198 | self._log.parformat('Energy range') | 198 | self._log.parformat('Energy range') |
| 199 | if obs_bounds.size() == 0: | 199 | if obs_bounds.size() == 0: |
| @@ -203,7 +203,7 @@ class csobsinfo(ctools.csobservation): | @@ -203,7 +203,7 @@ class csobsinfo(ctools.csobservation): | ||
| 203 | self._log(' - ') | 203 | self._log(' - ') |
| 204 | self._log(str(obs_bounds.emax())) | 204 | self._log(str(obs_bounds.emax())) |
| 205 | self._log('\n') | 205 | self._log('\n') |
| 206 | - | 206 | + |
| 207 | # Log observation time interval | 207 | # Log observation time interval |
| 208 | self._log.parformat('Time range (MJD)') | 208 | self._log.parformat('Time range (MJD)') |
| 209 | if obs_gti.size() == 0: | 209 | if obs_gti.size() == 0: |
| @@ -213,7 +213,7 @@ class csobsinfo(ctools.csobservation): | @@ -213,7 +213,7 @@ class csobsinfo(ctools.csobservation): | ||
| 213 | self._log(' - ') | 213 | self._log(' - ') |
| 214 | self._log(str(obs_gti.tstop().mjd())) | 214 | self._log(str(obs_gti.tstop().mjd())) |
| 215 | self._log('\n') | 215 | self._log('\n') |
| 216 | - | 216 | + |
| 217 | # Log observation information | 217 | # Log observation information |
| 218 | self._log_value(gammalib.EXPLICIT, 'Ontime', '%.3f s' % | 218 | self._log_value(gammalib.EXPLICIT, 'Ontime', '%.3f s' % |
| 219 | obs.ontime()) | 219 | obs.ontime()) |
| @@ -233,7 +233,7 @@ class csobsinfo(ctools.csobservation): | @@ -233,7 +233,7 @@ class csobsinfo(ctools.csobservation): | ||
| 233 | zenith) | 233 | zenith) |
| 234 | self._log_value(gammalib.EXPLICIT, 'Azimuth angle', '%.2f deg' % | 234 | self._log_value(gammalib.EXPLICIT, 'Azimuth angle', '%.2f deg' % |
| 235 | azimuth) | 235 | azimuth) |
| 236 | - | 236 | + |
| 237 | # Write summary header | 237 | # Write summary header |
| 238 | self._log_header1(gammalib.NORMAL, 'Summary') | 238 | self._log_header1(gammalib.NORMAL, 'Summary') |
| 239 | 239 | ||
| @@ -258,7 +258,7 @@ class csobsinfo(ctools.csobservation): | @@ -258,7 +258,7 @@ class csobsinfo(ctools.csobservation): | ||
| 258 | mean_azimuth = '%.2f deg' % (sum(self._azimuths) / len(self._azimuths)) | 258 | mean_azimuth = '%.2f deg' % (sum(self._azimuths) / len(self._azimuths)) |
| 259 | else: | 259 | else: |
| 260 | mean_azimuth = 'Unknown' | 260 | mean_azimuth = 'Unknown' |
| 261 | - | 261 | + |
| 262 | # Log mean offset, azimuth and zenith angle | 262 | # Log mean offset, azimuth and zenith angle |
| 263 | self._log_header3(gammalib.NORMAL, 'Pointings') | 263 | self._log_header3(gammalib.NORMAL, 'Pointings') |
| 264 | self._log_value(gammalib.NORMAL, 'Mean offset angle', mean_offset) | 264 | self._log_value(gammalib.NORMAL, 'Mean offset angle', mean_offset) |
| @@ -323,48 +323,60 @@ class csobsinfo(ctools.csobservation): | @@ -323,48 +323,60 @@ class csobsinfo(ctools.csobservation): | ||
| 323 | 323 | ||
| 324 | # Check if DS9 file is valid | 324 | # Check if DS9 file is valid |
| 325 | if ds9file.url() != 'NONE': | 325 | if ds9file.url() != 'NONE': |
| 326 | - | 326 | + |
| 327 | # Write header | 327 | # Write header |
| 328 | self._log_header1(gammalib.TERSE, 'Save pointings in DS9 file') | 328 | self._log_header1(gammalib.TERSE, 'Save pointings in DS9 file') |
| 329 | 329 | ||
| 330 | # Log filename | 330 | # Log filename |
| 331 | self._log_value(gammalib.NORMAL, 'DS9 filename', ds9file.url()) | 331 | self._log_value(gammalib.NORMAL, 'DS9 filename', ds9file.url()) |
| 332 | - | ||
| 333 | - # Open file | 332 | + |
| 333 | + # Open file | ||
| 334 | f = open(ds9file.url(),'w') | 334 | f = open(ds9file.url(),'w') |
| 335 | - | 335 | + |
| 336 | # Write coordinate system | 336 | # Write coordinate system |
| 337 | f.write('fk5\n') | 337 | f.write('fk5\n') |
| 338 | - | 338 | + |
| 339 | # Loop over pointings | 339 | # Loop over pointings |
| 340 | for i in range(len(self._pnt_ra)): | 340 | for i in range(len(self._pnt_ra)): |
| 341 | - | 341 | + |
| 342 | # Create string | 342 | # Create string |
| 343 | line = 'point(' | 343 | line = 'point(' |
| 344 | line += str(self._pnt_ra[i])+','+str(self._pnt_dec[i])+')' | 344 | line += str(self._pnt_ra[i])+','+str(self._pnt_dec[i])+')' |
| 345 | line += ' # point=cross 20 width=3\n' | 345 | line += ' # point=cross 20 width=3\n' |
| 346 | - | 346 | + |
| 347 | # Write to file | 347 | # Write to file |
| 348 | f.write(line) | 348 | f.write(line) |
| 349 | - | 349 | + |
| 350 | # Close file | 350 | # Close file |
| 351 | f.close() | 351 | f.close() |
| 352 | - | 352 | + |
| 353 | # Return | 353 | # Return |
| 354 | - return | ||
| 355 | - | 354 | + return |
| 355 | + | ||
| 356 | def zeniths(self): | 356 | def zeniths(self): |
| 357 | """ | 357 | """ |
| 358 | Return zenith angles | 358 | Return zenith angles |
| 359 | """ | 359 | """ |
| 360 | return self._zeniths | 360 | return self._zeniths |
| 361 | - | 361 | + |
| 362 | def azimuths(self): | 362 | def azimuths(self): |
| 363 | """ | 363 | """ |
| 364 | Return azimuth angles | 364 | Return azimuth angles |
| 365 | """ | 365 | """ |
| 366 | return self._azimuths | 366 | return self._azimuths |
| 367 | - | 367 | + |
| 368 | + def ras(self): | ||
| 369 | + """ | ||
| 370 | + Return pointings right ascension | ||
| 371 | + """ | ||
| 372 | + return self._pnt_ra | ||
| 373 | + | ||
| 374 | + def decs(self): | ||
| 375 | + """ | ||
| 376 | + Return pointings declination | ||
| 377 | + """ | ||
| 378 | + return self._pnt_dec | ||
| 379 | + | ||
| 368 | def offsets(self): | 380 | def offsets(self): |
| 369 | """ | 381 | """ |
| 370 | Return offset angles | 382 | Return offset angles |
| @@ -376,13 +388,13 @@ class csobsinfo(ctools.csobservation): | @@ -376,13 +388,13 @@ class csobsinfo(ctools.csobservation): | ||
| 376 | Return energy boundaries | 388 | Return energy boundaries |
| 377 | """ | 389 | """ |
| 378 | return self._ebounds | 390 | return self._ebounds |
| 379 | - | 391 | + |
| 380 | def gti(self): | 392 | def gti(self): |
| 381 | """ | 393 | """ |
| 382 | Return good time intervals | 394 | Return good time intervals |
| 383 | """ | 395 | """ |
| 384 | return self._gti | 396 | return self._gti |
| 385 | - | 397 | + |
| 386 | 398 | ||
| 387 | # ======================== # | 399 | # ======================== # |
| 388 | # Main routine entry point # | 400 | # Main routine entry point # |
| @@ -391,6 +403,6 @@ if __name__ == '__main__': | @@ -391,6 +403,6 @@ if __name__ == '__main__': | ||
| 391 | 403 | ||
| 392 | # Create instance of application | 404 | # Create instance of application |
| 393 | app = csobsinfo(sys.argv) | 405 | app = csobsinfo(sys.argv) |
| 394 | - | 406 | + |
| 395 | # Execute application | 407 | # Execute application |
| 396 | app.execute() | 408 | app.execute() |
cscripts/csphagen.py
| @@ -123,7 +123,8 @@ class csphagen(ctools.csobservation): | @@ -123,7 +123,8 @@ class csphagen(ctools.csobservation): | ||
| 123 | # Off region region the parameter 'bkgregfile' for all CTA observations | 123 | # Off region region the parameter 'bkgregfile' for all CTA observations |
| 124 | # without Off region | 124 | # without Off region |
| 125 | for obs in self.obs(): | 125 | for obs in self.obs(): |
| 126 | - if obs.instrument() == 'CTA': | 126 | + #if obs.instrument() == 'CTA': |
| 127 | + if obs.classname() == 'GCTAObservation': | ||
| 127 | if obs.off_regions().is_empty(): | 128 | if obs.off_regions().is_empty(): |
| 128 | filename = self['bkgregfile'].filename() | 129 | filename = self['bkgregfile'].filename() |
| 129 | regions = gammalib.GSkyRegions(filename) | 130 | regions = gammalib.GSkyRegions(filename) |
| @@ -263,8 +264,8 @@ class csphagen(ctools.csobservation): | @@ -263,8 +264,8 @@ class csphagen(ctools.csobservation): | ||
| 263 | """ | 264 | """ |
| 264 | Set models in observation container | 265 | Set models in observation container |
| 265 | 266 | ||
| 266 | - The method replaces all "CTA" background models by "CTAOnOff" | ||
| 267 | - background models. | 267 | + The method replaces all "CTA", "HESS", "VERITAS", and "MAGIC" |
| 268 | + background models by "CTAOnOff" background models. | ||
| 268 | 269 | ||
| 269 | Parameters | 270 | Parameters |
| 270 | ---------- | 271 | ---------- |
| @@ -279,11 +280,15 @@ class csphagen(ctools.csobservation): | @@ -279,11 +280,15 @@ class csphagen(ctools.csobservation): | ||
| 279 | # Initialise model container | 280 | # Initialise model container |
| 280 | models = gammalib.GModels() | 281 | models = gammalib.GModels() |
| 281 | 282 | ||
| 282 | - # Loop over all models and replace CTA background model by CTAOnOff | ||
| 283 | - # background model | 283 | + # Loop over all models and replace CTA/HESS/VERITAS/MAGIC background |
| 284 | + # models by CTAOnOff background model | ||
| 284 | for model in self.obs().models(): | 285 | for model in self.obs().models(): |
| 285 | - if 'GCTA' in model.classname() and 'CTA' in model.instruments(): | ||
| 286 | - model.instruments('CTAOnOff') | 286 | + if 'GCTA' in model.classname(): |
| 287 | + if 'CTA' in model.instruments() or \ | ||
| 288 | + 'HESS' in model.instruments() or \ | ||
| 289 | + 'VERITAS' in model.instruments() or \ | ||
| 290 | + 'MAGIC' in model.instruments(): | ||
| 291 | + model.instruments('CTAOnOff') | ||
| 287 | models.append(model) | 292 | models.append(model) |
| 288 | 293 | ||
| 289 | # Append model to observation container | 294 | # Append model to observation container |
| @@ -399,7 +404,8 @@ class csphagen(ctools.csobservation): | @@ -399,7 +404,8 @@ class csphagen(ctools.csobservation): | ||
| 399 | for obs in self.obs(): | 404 | for obs in self.obs(): |
| 400 | 405 | ||
| 401 | # Skip non CTA observations | 406 | # Skip non CTA observations |
| 402 | - if obs.instrument() != 'CTA': | 407 | + #if obs.instrument() != 'CTA': |
| 408 | + if obs.classname() != 'GCTAObservation': | ||
| 403 | self._log_string(gammalib.NORMAL, 'Skip %s observation "%s"' % \ | 409 | self._log_string(gammalib.NORMAL, 'Skip %s observation "%s"' % \ |
| 404 | (obs.instrument(), obs.id())) | 410 | (obs.instrument(), obs.id())) |
| 405 | continue | 411 | continue |
cscripts/csresspec.py
| @@ -241,14 +241,14 @@ class csresspec(ctools.csobservation): | @@ -241,14 +241,14 @@ class csresspec(ctools.csobservation): | ||
| 241 | 241 | ||
| 242 | # Bin events | 242 | # Bin events |
| 243 | cntcube = ctools.ctbin(obs) | 243 | cntcube = ctools.ctbin(obs) |
| 244 | - cntcube['xref'] = ra | ||
| 245 | - cntcube['yref'] = dec | ||
| 246 | - cntcube['binsz'] = 0.02 | ||
| 247 | - cntcube['nxpix'] = npix | ||
| 248 | - cntcube['nypix'] = npix | ||
| 249 | - cntcube['proj'] = 'TAN' | 244 | + cntcube['xref'] = ra |
| 245 | + cntcube['yref'] = dec | ||
| 246 | + cntcube['binsz'] = 0.02 | ||
| 247 | + cntcube['nxpix'] = npix | ||
| 248 | + cntcube['nypix'] = npix | ||
| 249 | + cntcube['proj'] = 'TAN' | ||
| 250 | cntcube['coordsys'] = 'CEL' | 250 | cntcube['coordsys'] = 'CEL' |
| 251 | - cntcube['ebinalg'] = self['ebinalg'].string() | 251 | + cntcube['ebinalg'] = self['ebinalg'].string() |
| 252 | if self['ebinalg'].string() == 'FILE': | 252 | if self['ebinalg'].string() == 'FILE': |
| 253 | cntcube['ebinfile'] = self['ebinfile'].filename() | 253 | cntcube['ebinfile'] = self['ebinfile'].filename() |
| 254 | else: | 254 | else: |
| @@ -356,7 +356,7 @@ class csresspec(ctools.csobservation): | @@ -356,7 +356,7 @@ class csresspec(ctools.csobservation): | ||
| 356 | def _cube_to_spectrum(self, cube, evlist_info): | 356 | def _cube_to_spectrum(self, cube, evlist_info): |
| 357 | """ | 357 | """ |
| 358 | Derive from event cube a count spectrum | 358 | Derive from event cube a count spectrum |
| 359 | - | 359 | + |
| 360 | If data come from event list use only the ROI and energy range of | 360 | If data come from event list use only the ROI and energy range of |
| 361 | the original data. Apply user defined mask if requested. | 361 | the original data. Apply user defined mask if requested. |
| 362 | 362 | ||
| @@ -550,29 +550,30 @@ class csresspec(ctools.csobservation): | @@ -550,29 +550,30 @@ class csresspec(ctools.csobservation): | ||
| 550 | # if 3D observation | 550 | # if 3D observation |
| 551 | if obs[0].classname() == 'GCTAObservation': | 551 | if obs[0].classname() == 'GCTAObservation': |
| 552 | 552 | ||
| 553 | - # Prepare Observations | ||
| 554 | - | ||
| 555 | # If already binned set the evlist_info dictionary to have | 553 | # If already binned set the evlist_info dictionary to have |
| 556 | # attribute was_list False | 554 | # attribute was_list False |
| 557 | if obs[0].eventtype() == 'CountsCube': | 555 | if obs[0].eventtype() == 'CountsCube': |
| 558 | evlist_info = {'was_list': False} | 556 | evlist_info = {'was_list': False} |
| 559 | - # Otherwise bin now | 557 | + |
| 558 | + # ... otherwise bin now | ||
| 560 | else: | 559 | else: |
| 561 | - # we remember if we binned an event list | ||
| 562 | - # so that we can mask only the ROI for residual calculation | 560 | + # we remember if we binned an event list so that we can |
| 561 | + # mask only the ROI for residual calculation | ||
| 563 | msg = 'Setting up binned observation' | 562 | msg = 'Setting up binned observation' |
| 564 | self._log_string(gammalib.NORMAL, msg) | 563 | self._log_string(gammalib.NORMAL, msg) |
| 565 | obs, evlist_info = self._bin_evlist(obs) | 564 | obs, evlist_info = self._bin_evlist(obs) |
| 566 | 565 | ||
| 567 | - # Calculate Model and residuals | ||
| 568 | - # If model cube is provided load it | 566 | + # Calculate Model and residuals. If model cube is provided load |
| 567 | + # it | ||
| 569 | if self._use_maps: | 568 | if self._use_maps: |
| 570 | modcube = gammalib.GCTAEventCube(self['inmodel'].filename()) | 569 | modcube = gammalib.GCTAEventCube(self['inmodel'].filename()) |
| 571 | - # Otherwise calculate it now | 570 | + |
| 571 | + # ... otherwise calculate it now | ||
| 572 | else: | 572 | else: |
| 573 | msg = 'Computing model cube' | 573 | msg = 'Computing model cube' |
| 574 | self._log_string(gammalib.NORMAL, msg) | 574 | self._log_string(gammalib.NORMAL, msg) |
| 575 | modelcube = ctools.ctmodel(obs) | 575 | modelcube = ctools.ctmodel(obs) |
| 576 | + modelcube['edisp'] = self['edisp'].boolean() | ||
| 576 | modelcube.run() | 577 | modelcube.run() |
| 577 | modcube = modelcube.cube().copy() | 578 | modcube = modelcube.cube().copy() |
| 578 | 579 |
cscripts/csroot2caldb.py
| @@ -2,7 +2,7 @@ | @@ -2,7 +2,7 @@ | ||
| 2 | # ========================================================================== | 2 | # ========================================================================== |
| 3 | # Generate IRFs in CALDB format from a ROOT offaxis performance file | 3 | # Generate IRFs in CALDB format from a ROOT offaxis performance file |
| 4 | # | 4 | # |
| 5 | -# Copyright (C) 2016-2017 Juergen Knoedlseder | 5 | +# Copyright (C) 2016-2018 Juergen Knoedlseder |
| 6 | # | 6 | # |
| 7 | # This program is free software: you can redistribute it and/or modify | 7 | # This program is free software: you can redistribute it and/or modify |
| 8 | # it under the terms of the GNU General Public License as published by | 8 | # it under the terms of the GNU General Public License as published by |
| @@ -618,7 +618,7 @@ class csroot2caldb(ctools.cscript): | @@ -618,7 +618,7 @@ class csroot2caldb(ctools.cscript): | ||
| 618 | ds['HDU_EA'].card('HI_THRES', emin, '[TeV] High energy threshold') | 618 | ds['HDU_EA'].card('HI_THRES', emin, '[TeV] High energy threshold') |
| 619 | 619 | ||
| 620 | # Create "EFFAREA" data column | 620 | # Create "EFFAREA" data column |
| 621 | - self._make_2D(etrue, ds['HDU_EA'], 'EFFAREA', 'm2') | 621 | + self._make_2D(etrue, ds['HDU_EA'], 'EFFAREA', 'm**2') |
| 622 | 622 | ||
| 623 | # Return | 623 | # Return |
| 624 | return | 624 | return |
| @@ -745,7 +745,6 @@ class csroot2caldb(ctools.cscript): | @@ -745,7 +745,6 @@ class csroot2caldb(ctools.cscript): | ||
| 745 | 'Generate Gaussian point spread function extension') | 745 | 'Generate Gaussian point spread function extension') |
| 746 | 746 | ||
| 747 | # Get relevant ROOT histograms | 747 | # Get relevant ROOT histograms |
| 748 | - #r68 = tfile.Get('AngRes_offaxis') | ||
| 749 | r68, _ = self._root2psf_get_r68_and_r80(tfile) | 748 | r68, _ = self._root2psf_get_r68_and_r80(tfile) |
| 750 | 749 | ||
| 751 | # Extract number of bins in histogram | 750 | # Extract number of bins in histogram |
| @@ -826,8 +825,6 @@ class csroot2caldb(ctools.cscript): | @@ -826,8 +825,6 @@ class csroot2caldb(ctools.cscript): | ||
| 826 | 'Generate King point spread function extension') | 825 | 'Generate King point spread function extension') |
| 827 | 826 | ||
| 828 | # Get relevant ROOT histograms | 827 | # Get relevant ROOT histograms |
| 829 | - #r68 = tfile.Get('AngRes_offaxis') | ||
| 830 | - #r80 = tfile.Get('AngRes80_offaxis') | ||
| 831 | r68, r80 = self._root2psf_get_r68_and_r80(tfile) | 828 | r68, r80 = self._root2psf_get_r68_and_r80(tfile) |
| 832 | 829 | ||
| 833 | # Extract number of bins in histogram | 830 | # Extract number of bins in histogram |
| @@ -1034,7 +1031,6 @@ class csroot2caldb(ctools.cscript): | @@ -1034,7 +1031,6 @@ class csroot2caldb(ctools.cscript): | ||
| 1034 | 1031 | ||
| 1035 | # Get relevant ROOT histograms | 1032 | # Get relevant ROOT histograms |
| 1036 | matrix = self._root2edisp_get_migra(tfile) | 1033 | matrix = self._root2edisp_get_migra(tfile) |
| 1037 | - #matrix = tfile.Get('EestOverEtrue_offaxis') | ||
| 1038 | 1034 | ||
| 1039 | # Write boundary keywords | 1035 | # Write boundary keywords |
| 1040 | self._set_cif_keywords(ds['HDU_EDISP'], irf['EDISP_NAME'], | 1036 | self._set_cif_keywords(ds['HDU_EDISP'], irf['EDISP_NAME'], |
| @@ -1087,7 +1083,7 @@ class csroot2caldb(ctools.cscript): | @@ -1087,7 +1083,7 @@ class csroot2caldb(ctools.cscript): | ||
| 1087 | irf['BGD_BOUNDS'], irf['BGD_DESC'], irf) | 1083 | irf['BGD_BOUNDS'], irf['BGD_DESC'], irf) |
| 1088 | 1084 | ||
| 1089 | # Create "BGD" data column | 1085 | # Create "BGD" data column |
| 1090 | - self._make_3D(array, ds['HDU_BGD'], 'BGD', '1/s/MeV/sr') | 1086 | + self._make_3D(array, ds['HDU_BGD'], 'BGD', '1/(MeV s sr)') |
| 1091 | 1087 | ||
| 1092 | # Return | 1088 | # Return |
| 1093 | return | 1089 | return |
| @@ -1327,7 +1323,7 @@ class csroot2caldb(ctools.cscript): | @@ -1327,7 +1323,7 @@ class csroot2caldb(ctools.cscript): | ||
| 1327 | # Log power law replacement | 1323 | # Log power law replacement |
| 1328 | self._log_value(gammalib.NORMAL, | 1324 | self._log_value(gammalib.NORMAL, |
| 1329 | 'Power law replacement', | 1325 | 'Power law replacement', |
| 1330 | - '%e cts/s/deg2 (E=%8.4f TeV (%d) ' | 1326 | + '%e cts/(s deg**2) (E=%8.4f TeV (%d) ' |
| 1331 | 'Off=%.2f deg (%d)' % | 1327 | 'Off=%.2f deg (%d)' % |
| 1332 | (value,engs[ieng],ieng,offset,ioff)) | 1328 | (value,engs[ieng],ieng,offset,ioff)) |
| 1333 | 1329 | ||
| @@ -1479,7 +1475,7 @@ class csroot2caldb(ctools.cscript): | @@ -1479,7 +1475,7 @@ class csroot2caldb(ctools.cscript): | ||
| 1479 | # Log background infill | 1475 | # Log background infill |
| 1480 | self._log_value(gammalib.NORMAL, | 1476 | self._log_value(gammalib.NORMAL, |
| 1481 | 'Background infill', | 1477 | 'Background infill', |
| 1482 | - '%e cts/s/deg2 (E=%8.4f TeV (%d) ' | 1478 | + '%e cts/(s deg**2) (E=%8.4f TeV (%d) ' |
| 1483 | 'Off=%.2f deg (%d)' % | 1479 | 'Off=%.2f deg (%d)' % |
| 1484 | (value,engs[ieng],ieng,offset,ioff)) | 1480 | (value,engs[ieng],ieng,offset,ioff)) |
| 1485 | 1481 |
doc/source/admin/install_devel.rst
| @@ -7,7 +7,7 @@ The current development version of the code can be downloaded as source | @@ -7,7 +7,7 @@ The current development version of the code can be downloaded as source | ||
| 7 | tarballs, Mac OS X binaries, or directly from the `Git <https://git-scm.com/>`_ | 7 | tarballs, Mac OS X binaries, or directly from the `Git <https://git-scm.com/>`_ |
| 8 | repository. | 8 | repository. |
| 9 | 9 | ||
| 10 | -The current ctools development release is ``ctools-1.5.0.dev1``. | 10 | +The current ctools development release is ``ctools-1.6.0.dev1``. |
| 11 | 11 | ||
| 12 | 12 | ||
| 13 | Source tarballs | 13 | Source tarballs |
| @@ -15,8 +15,8 @@ Source tarballs | @@ -15,8 +15,8 @@ Source tarballs | ||
| 15 | 15 | ||
| 16 | Download the source tarballs from the following links | 16 | Download the source tarballs from the following links |
| 17 | 17 | ||
| 18 | -- `ctools <http://cta.irap.omp.eu/ctools/releases/ctools/ctools-1.5.0.dev1.tar.gz>`_ | ||
| 19 | -- `GammaLib <http://cta.irap.omp.eu/ctools/releases/gammalib/gammalib-1.5.0.dev1.tar.gz>`_ | 18 | +- `ctools <http://cta.irap.omp.eu/ctools/releases/ctools/ctools-1.6.0.dev1.tar.gz>`_ |
| 19 | +- `GammaLib <http://cta.irap.omp.eu/ctools/releases/gammalib/gammalib-1.6.0.dev1.tar.gz>`_ | ||
| 20 | 20 | ||
| 21 | and follow the instructions on :ref:`sec_install_source`. | 21 | and follow the instructions on :ref:`sec_install_source`. |
| 22 | 22 | ||
| @@ -26,7 +26,7 @@ Binary packages | @@ -26,7 +26,7 @@ Binary packages | ||
| 26 | 26 | ||
| 27 | Download the installer image from the following link | 27 | Download the installer image from the following link |
| 28 | 28 | ||
| 29 | -- `Mac OS X (10.7+) <http://cta.irap.omp.eu/ctools/releases/ctools/ctools-1.5.0.dev1-macosx10.7.dmg>`_ | 29 | +- `Mac OS X (10.7+) <http://cta.irap.omp.eu/ctools/releases/ctools/ctools-1.6.0.dev1-macosx10.7.dmg>`_ |
| 30 | 30 | ||
| 31 | and follow the instructions on :ref:`sec_install_binary`. | 31 | and follow the instructions on :ref:`sec_install_binary`. |
| 32 | 32 |
doc/source/admin/release_history/1.5.1.rst
0 โ 100644
| 1 | +.. _1.5.1: | ||
| 2 | + | ||
| 3 | +ctools 1.5.1 release | ||
| 4 | +==================== | ||
| 5 | + | ||
| 6 | +Overview | ||
| 7 | +-------- | ||
| 8 | + | ||
| 9 | +ctools 1.5.1 is a bug fix release for ctools release 1.5. | ||
| 10 | + | ||
| 11 | +The following bugs were fixed: | ||
| 12 | + | ||
| 13 | +* [`2341 <https://cta-redmine.irap.omp.eu/issues/2341>`_] - | ||
| 14 | + Take energy dispersion in :ref:`csresspec` modelling into account | ||
| 15 | + | ||
| 16 | + | ||
| 17 | +The following improvements were made: | ||
| 18 | + | ||
| 19 | +* [`2307 <https://cta-redmine.irap.omp.eu/issues/2307>`_] - | ||
| 20 | + Enable using :ref:`csphagen` for HESS, VERITAS and MAGIC observations |
doc/source/admin/release_history/1.6.rst
0 โ 100644
| 1 | +.. _1.6: | ||
| 2 | + | ||
| 3 | +ctools 1.6 release | ||
| 4 | +================== | ||
| 5 | + | ||
| 6 | +Overview | ||
| 7 | +-------- | ||
| 8 | + | ||
| 9 | +ctools 1.6 is a major release that adds significant functionality. | ||
| 10 | + | ||
| 11 | +In particular, this release provides: | ||
| 12 | + | ||
| 13 | +* ... | ||
| 14 | + | ||
| 15 | + | ||
| 16 | +Bug fixes | ||
| 17 | +--------- | ||
| 18 | + | ||
| 19 | +* ... | ||
| 20 | + | ||
| 21 | + | ||
| 22 | +Improvements | ||
| 23 | +------------ | ||
| 24 | + | ||
| 25 | +* [`2313 <https://cta-redmine.irap.omp.eu/issues/2313>`_] - | ||
| 26 | + Add `ras()` and `decs()` methods to :ref:`csobsinfo` | ||
| 27 | +* [`2311 <https://cta-redmine.irap.omp.eu/issues/2311>`_] - | ||
| 28 | + Allow specifying of input skymap to :ref:`ctskymap` tool | ||
| 29 | +* [`2309 <https://cta-redmine.irap.omp.eu/issues/2309>`_] - | ||
| 30 | + Accelerate `IRF` and `RING` background methods in :ref:`ctskymap` | ||
| 31 | + | ||
| 32 | + | ||
| 33 | +New features | ||
| 34 | +------------ | ||
| 35 | + | ||
| 36 | +* ... | ||
| 37 | + | ||
| 38 | + | ||
| 39 | +Clean up | ||
| 40 | +-------- | ||
| 41 | + | ||
| 42 | +* ... |
doc/source/admin/release_history/index.rst
| @@ -6,6 +6,8 @@ Release History | @@ -6,6 +6,8 @@ Release History | ||
| 6 | .. toctree:: | 6 | .. toctree:: |
| 7 | :maxdepth: 1 | 7 | :maxdepth: 1 |
| 8 | 8 | ||
| 9 | + ctools 1.6 <1.6> | ||
| 10 | + ctools 1.5.1 <1.5.1> | ||
| 9 | ctools 1.5 <1.5> | 11 | ctools 1.5 <1.5> |
| 10 | ctools 1.4.3 <1.4.3> | 12 | ctools 1.4.3 <1.4.3> |
| 11 | ctools 1.4.2 <1.4.2> | 13 | ctools 1.4.2 <1.4.2> |
doc/source/users/reference_manual/ctskymap.rst
| @@ -41,6 +41,11 @@ General parameters | @@ -41,6 +41,11 @@ General parameters | ||
| 41 | Instrument response function (only required for IRF background subtraction | 41 | Instrument response function (only required for IRF background subtraction |
| 42 | if no response information is provided by ``inobs``). | 42 | if no response information is provided by ``inobs``). |
| 43 | 43 | ||
| 44 | +``(inmap = NONE) [file]`` | ||
| 45 | + Input sky map file containing a ``COUNTS`` and an ``ACCEPTANCE`` extension. | ||
| 46 | + Such extensions are produce by a previous run of the :ref:`ctskymap` tool with | ||
| 47 | + the ``IRF`` or ``RING`` background method. | ||
| 48 | + | ||
| 44 | ``outmap [file]`` | 49 | ``outmap [file]`` |
| 45 | Output sky map file. | 50 | Output sky map file. |
| 46 | 51 | ||
| @@ -82,17 +87,37 @@ Background subtraction configuration parameters | @@ -82,17 +87,37 @@ Background subtraction configuration parameters | ||
| 82 | Background subtraction method. | 87 | Background subtraction method. |
| 83 | 88 | ||
| 84 | ``roiradius [real]`` | 89 | ``roiradius [real]`` |
| 85 | - Source region radius for estimating on-counts (in degrees). | 90 | + Source region radius for ``RING`` subtraction (in degrees). |
| 86 | 91 | ||
| 87 | ``inradius [real]`` | 92 | ``inradius [real]`` |
| 88 | - Inner ring radius for RING subtraction (in degrees). | 93 | + Inner background ring radius for ``RING`` subtraction (in degrees). |
| 89 | 94 | ||
| 90 | ``outradius [real]`` | 95 | ``outradius [real]`` |
| 91 | - Outer ring radius for RING subtraction (in degrees). | 96 | + Outer background ring radius for ``RING`` subtraction (in degrees). |
| 97 | + | ||
| 98 | +``iterations [integer]`` | ||
| 99 | + Number of iterations for the automatic computation of exclusion regions. | ||
| 100 | + Sky map pixels with detection significance above the value specified by the | ||
| 101 | + ``threshold`` parameter will be defined as exclusion regions, and the ``RING`` | ||
| 102 | + background will be recomputed based on these exclusion regions. Since this | ||
| 103 | + will likely change the significance of the pixels, the procedure can be | ||
| 104 | + iteratively repeated, and the ``iterations`` parameter specifies how often | ||
| 105 | + the procedure should be repeated. | ||
| 106 | + | ||
| 107 | +``threshold [real]`` | ||
| 108 | + Significance threshold above which pixels should be excluded for the | ||
| 109 | + background computation in the ``RING`` background method. | ||
| 92 | 110 | ||
| 93 | ``(inexclusion = NONE) [file]`` | 111 | ``(inexclusion = NONE) [file]`` |
| 94 | Exclusion region file as either a FITS map or DS9 region file. | 112 | Exclusion region file as either a FITS map or DS9 region file. |
| 95 | 113 | ||
| 114 | +``(usefft = yes) [boolean]`` | ||
| 115 | + Specifies whether a FFT should be used for ring computation. If set to | ||
| 116 | + ``no`` the ring background will be computed directly. Direct computation is | ||
| 117 | + more accurate since the precise angular distances between pixels are taken | ||
| 118 | + into account, but FFT is faster, but less accurate since it assumes | ||
| 119 | + Euclidean distances between pixels. | ||
| 120 | + | ||
| 96 | 121 | ||
| 97 | Standard parameters | 122 | Standard parameters |
| 98 | ------------------- | 123 | ------------------- |
pyext/ctobservation.i
| @@ -94,6 +94,7 @@ public: | @@ -94,6 +94,7 @@ public: | ||
| 94 | // Make methods private in Python by prepending an underscore | 94 | // Make methods private in Python by prepending an underscore |
| 95 | %rename(_first_unbinned_observation) first_unbinned_observation; | 95 | %rename(_first_unbinned_observation) first_unbinned_observation; |
| 96 | %rename(_next_unbinned_observation) next_unbinned_observation; | 96 | %rename(_next_unbinned_observation) next_unbinned_observation; |
| 97 | + %rename(_read_ogip_keywords) read_ogip_keywords; | ||
| 97 | %rename(_write_ogip_keywords) write_ogip_keywords; | 98 | %rename(_write_ogip_keywords) write_ogip_keywords; |
| 98 | %rename(_set_obs_statistic) set_obs_statistic; | 99 | %rename(_set_obs_statistic) set_obs_statistic; |
| 99 | %rename(_save_events_fits) save_events_fits; | 100 | %rename(_save_events_fits) save_events_fits; |
src/ctskymap/ctskymap.cpp
| 1 | /*************************************************************************** | 1 | /*************************************************************************** |
| 2 | * ctskymap - Sky mapping tool * | 2 | * ctskymap - Sky mapping tool * |
| 3 | * ----------------------------------------------------------------------- * | 3 | * ----------------------------------------------------------------------- * |
| 4 | - * copyright (C) 2011-2017 by Juergen Knoedlseder * | 4 | + * copyright (C) 2011-2018 by Juergen Knoedlseder * |
| 5 | * ----------------------------------------------------------------------- * | 5 | * ----------------------------------------------------------------------- * |
| 6 | * * | 6 | * * |
| 7 | * This program is free software: you can redistribute it and/or modify * | 7 | * This program is free software: you can redistribute it and/or modify * |
| @@ -30,14 +30,14 @@ | @@ -30,14 +30,14 @@ | ||
| 30 | #endif | 30 | #endif |
| 31 | #include <cstdio> | 31 | #include <cstdio> |
| 32 | #include "ctskymap.hpp" | 32 | #include "ctskymap.hpp" |
| 33 | -#include "GSkyRegions.hpp" | ||
| 34 | 33 | ||
| 35 | /* __ Method name definitions ____________________________________________ */ | 34 | /* __ Method name definitions ____________________________________________ */ |
| 36 | #define G_GET_PARAMETERS "ctskymap::get_parameter()" | 35 | #define G_GET_PARAMETERS "ctskymap::get_parameter()" |
| 37 | #define G_MAP_EVENTS "ctskymap::map_events(GCTAObservation*)" | 36 | #define G_MAP_EVENTS "ctskymap::map_events(GCTAObservation*)" |
| 38 | #define G_MAP_BACKGROUND_IRF "ctskymap::map_background_irf(GCTAObservation*)" | 37 | #define G_MAP_BACKGROUND_IRF "ctskymap::map_background_irf(GCTAObservation*)" |
| 39 | -#define G_MAP_BACKGROUND_RING "ctskymap::map_background_ring("\ | ||
| 40 | - "GCTAObservation*)" | 38 | +#define G_RING_BOUNDING_BOX "ctskymap::ring_bounding_box(int&, int&, int&, "\ |
| 39 | + "int&, int&)" | ||
| 40 | +#define G_RING_KERNEL "ctskymap::ring_kernel(double&, double&)" | ||
| 41 | 41 | ||
| 42 | /* __ Debug definitions __________________________________________________ */ | 42 | /* __ Debug definitions __________________________________________________ */ |
| 43 | 43 | ||
| @@ -222,37 +222,18 @@ void ctskymap::run(void) | @@ -222,37 +222,18 @@ void ctskymap::run(void) | ||
| 222 | // Get parameters | 222 | // Get parameters |
| 223 | get_parameters(); | 223 | get_parameters(); |
| 224 | 224 | ||
| 225 | - // Write input observation container into logger | ||
| 226 | - log_observations(NORMAL, m_obs, "Input observation"); | ||
| 227 | - | ||
| 228 | - // Write header into logger | ||
| 229 | - log_header1(TERSE, gammalib::number("Map observation", m_obs.size())); | ||
| 230 | - | ||
| 231 | - // Loop over all unbinned CTA observations in the container | ||
| 232 | - for (GCTAObservation* obs = first_unbinned_observation(); obs != NULL; | ||
| 233 | - obs = next_unbinned_observation()) { | ||
| 234 | - | ||
| 235 | - // Map events into sky map | ||
| 236 | - map_events(obs); | 225 | + // Setup maps |
| 226 | + setup_maps(); | ||
| 237 | 227 | ||
| 238 | - // Compute background sky map | ||
| 239 | - map_background(obs); | ||
| 240 | - | ||
| 241 | - // Dispose events to free memory | ||
| 242 | - obs->dispose_events(); | ||
| 243 | - | ||
| 244 | - } // endfor: looped over observations | ||
| 245 | - | ||
| 246 | - // If background subtraction is selected then compute significance map | ||
| 247 | - if (m_bkgsubtract != "NONE") { | ||
| 248 | - | ||
| 249 | - // Compute the significance map | ||
| 250 | - map_significance(); | ||
| 251 | - | ||
| 252 | - // Subtract background map from counts map | ||
| 253 | - m_skymap -= m_bkgmap; | 228 | + // If no input map exists then fill counts and acceptance maps from |
| 229 | + // observation container | ||
| 230 | + if (!m_has_inmap) { | ||
| 231 | + fill_maps(); | ||
| 254 | } | 232 | } |
| 255 | 233 | ||
| 234 | + // Compute maps | ||
| 235 | + compute_maps(); | ||
| 236 | + | ||
| 256 | // Optionally publish sky map | 237 | // Optionally publish sky map |
| 257 | if (m_publish) { | 238 | if (m_publish) { |
| 258 | publish(); | 239 | publish(); |
| @@ -266,8 +247,8 @@ void ctskymap::run(void) | @@ -266,8 +247,8 @@ void ctskymap::run(void) | ||
| 266 | /***********************************************************************//** | 247 | /***********************************************************************//** |
| 267 | * @brief Save sky map | 248 | * @brief Save sky map |
| 268 | * | 249 | * |
| 269 | - * Saves the sky map into a FITS file. The FITS file name is specified by the | ||
| 270 | - * @p outname parameter. | 250 | + * Saves the sky map into a FITS file. The FITS file name is specified by |
| 251 | + * the @p outname parameter. | ||
| 271 | ***************************************************************************/ | 252 | ***************************************************************************/ |
| 272 | void ctskymap::save(void) | 253 | void ctskymap::save(void) |
| 273 | { | 254 | { |
| @@ -284,39 +265,31 @@ void ctskymap::save(void) | @@ -284,39 +265,31 @@ void ctskymap::save(void) | ||
| 284 | GFits fits; | 265 | GFits fits; |
| 285 | 266 | ||
| 286 | // Write sky map into FITS file | 267 | // Write sky map into FITS file |
| 287 | - GFitsHDU* hdu = m_skymap.write(fits); | ||
| 288 | - | ||
| 289 | - // Write keywords into sky map extension | ||
| 290 | - write_ogip_keywords(hdu); | ||
| 291 | - write_hdu_keywords(hdu); | 268 | + write_map(fits, m_skymap, "SKYMAP"); |
| 292 | 269 | ||
| 293 | - // If background subtraction is requested then write background map | ||
| 294 | - // and significance map to FITS file | 270 | + // If background subtraction is requested then write the background map, |
| 271 | + // the significance map, the counts map and the acceptance map to the | ||
| 272 | + // FITS file | ||
| 295 | if (m_bkgsubtract != "NONE") { | 273 | if (m_bkgsubtract != "NONE") { |
| 296 | - | ||
| 297 | - // Write background map into FITS file | ||
| 298 | - hdu = m_bkgmap.write(fits); | ||
| 299 | 274 | ||
| 300 | - // Set background map extension name | ||
| 301 | - if (hdu != NULL) { | ||
| 302 | - hdu->extname("BACKGROUND"); | ||
| 303 | - } | 275 | + // Write background map into FITS file |
| 276 | + write_map(fits, m_bkgmap, "BACKGROUND"); | ||
| 304 | 277 | ||
| 305 | - // Write keywords into background extension | ||
| 306 | - write_ogip_keywords(hdu); | ||
| 307 | - write_hdu_keywords(hdu); | ||
| 308 | 278 | ||
| 309 | // Write significance map into FITS file | 279 | // Write significance map into FITS file |
| 310 | - hdu = m_sigmap.write(fits); | 280 | + write_map(fits, m_sigmap, "SIGNIFICANCE"); |
| 311 | 281 | ||
| 312 | - // Set significance map extension name | ||
| 313 | - if (hdu != NULL) { | ||
| 314 | - hdu->extname("SIGNIFICANCE"); | ||
| 315 | - } | 282 | + // Write counts map into FITS file |
| 283 | + write_map(fits, m_counts, "COUNTS"); | ||
| 284 | + | ||
| 285 | + // Write acceptance map into FITS file | ||
| 286 | + write_map(fits, m_acceptance, "ACCEPTANCE"); | ||
| 316 | 287 | ||
| 317 | - // Write keywords into significance extension | ||
| 318 | - write_ogip_keywords(hdu); | ||
| 319 | - write_hdu_keywords(hdu); | 288 | + // If RING background subtraction is requested then write also |
| 289 | + // the exclusion map to the FITS file | ||
| 290 | + if (m_bkgsubtract == "RING") { | ||
| 291 | + write_map(fits, m_exclmap, "EXCLUSION"); | ||
| 292 | + } | ||
| 320 | 293 | ||
| 321 | } // endif: background subtraction was requested | 294 | } // endif: background subtraction was requested |
| 322 | 295 | ||
| @@ -375,25 +348,36 @@ void ctskymap::publish(const std::string& name) | @@ -375,25 +348,36 @@ void ctskymap::publish(const std::string& name) | ||
| 375 | ***************************************************************************/ | 348 | ***************************************************************************/ |
| 376 | void ctskymap::init_members(void) | 349 | void ctskymap::init_members(void) |
| 377 | { | 350 | { |
| 378 | - // Initialise members | ||
| 379 | - m_skymap.clear(); | ||
| 380 | - m_bkgmap.clear(); | ||
| 381 | - m_sigmap.clear(); | ||
| 382 | - m_exclmap.clear(); | ||
| 383 | - m_alphamap.clear(); | ||
| 384 | - m_onmap.clear(); | 351 | + // Initialise User parameters |
| 352 | + m_outmap.clear(); | ||
| 353 | + m_inexclusion.clear(); | ||
| 385 | m_emin = 0.0; | 354 | m_emin = 0.0; |
| 386 | m_emax = 0.0; | 355 | m_emax = 0.0; |
| 387 | m_bkgsubtract = "NONE"; | 356 | m_bkgsubtract = "NONE"; |
| 388 | m_roiradius = 0.0; | 357 | m_roiradius = 0.0; |
| 389 | m_inradius = 0.0; | 358 | m_inradius = 0.0; |
| 390 | m_outradius = 0.0; | 359 | m_outradius = 0.0; |
| 360 | + m_iterations = 0; | ||
| 361 | + m_threshold = 5.0; | ||
| 362 | + m_usefft = true; | ||
| 391 | m_publish = false; | 363 | m_publish = false; |
| 392 | m_chatter = static_cast<GChatter>(2); | 364 | m_chatter = static_cast<GChatter>(2); |
| 393 | 365 | ||
| 366 | + // Initialise members | ||
| 367 | + m_has_inmap = false; | ||
| 368 | + m_skymap.clear(); | ||
| 369 | + m_bkgmap.clear(); | ||
| 370 | + m_sigmap.clear(); | ||
| 371 | + m_counts.clear(); | ||
| 372 | + m_acceptance.clear(); | ||
| 373 | + m_exclmap.clear(); | ||
| 374 | + | ||
| 394 | // Initialise cache | 375 | // Initialise cache |
| 395 | m_solidangle.clear(); | 376 | m_solidangle.clear(); |
| 396 | m_dirs.clear(); | 377 | m_dirs.clear(); |
| 378 | + m_cos_roiradius = 1.0; | ||
| 379 | + m_cos_inradius = 1.0; | ||
| 380 | + m_cos_outradius = 1.0; | ||
| 397 | 381 | ||
| 398 | // Return | 382 | // Return |
| 399 | return; | 383 | return; |
| @@ -407,25 +391,36 @@ void ctskymap::init_members(void) | @@ -407,25 +391,36 @@ void ctskymap::init_members(void) | ||
| 407 | ***************************************************************************/ | 391 | ***************************************************************************/ |
| 408 | void ctskymap::copy_members(const ctskymap& app) | 392 | void ctskymap::copy_members(const ctskymap& app) |
| 409 | { | 393 | { |
| 410 | - // Copy attributes | ||
| 411 | - m_skymap = app.m_skymap; | ||
| 412 | - m_bkgmap = app.m_bkgmap; | ||
| 413 | - m_sigmap = app.m_sigmap; | ||
| 414 | - m_exclmap = app.m_exclmap; | ||
| 415 | - m_alphamap = app.m_alphamap; | ||
| 416 | - m_onmap = app.m_onmap; | 394 | + // Copy User parameters |
| 395 | + m_outmap = app.m_outmap; | ||
| 396 | + m_inexclusion = app.m_inexclusion; | ||
| 417 | m_emin = app.m_emin; | 397 | m_emin = app.m_emin; |
| 418 | m_emax = app.m_emax; | 398 | m_emax = app.m_emax; |
| 419 | m_bkgsubtract = app.m_bkgsubtract; | 399 | m_bkgsubtract = app.m_bkgsubtract; |
| 420 | m_roiradius = app.m_roiradius; | 400 | m_roiradius = app.m_roiradius; |
| 421 | m_inradius = app.m_inradius; | 401 | m_inradius = app.m_inradius; |
| 422 | m_outradius = app.m_outradius; | 402 | m_outradius = app.m_outradius; |
| 403 | + m_iterations = app.m_iterations; | ||
| 404 | + m_threshold = app.m_threshold; | ||
| 405 | + m_usefft = app.m_usefft; | ||
| 423 | m_publish = app.m_publish; | 406 | m_publish = app.m_publish; |
| 424 | m_chatter = app.m_chatter; | 407 | m_chatter = app.m_chatter; |
| 425 | 408 | ||
| 409 | + // Copy members | ||
| 410 | + m_has_inmap = app.m_has_inmap; | ||
| 411 | + m_skymap = app.m_skymap; | ||
| 412 | + m_bkgmap = app.m_bkgmap; | ||
| 413 | + m_sigmap = app.m_sigmap; | ||
| 414 | + m_counts = app.m_counts; | ||
| 415 | + m_acceptance = app.m_acceptance; | ||
| 416 | + m_exclmap = app.m_exclmap; | ||
| 417 | + | ||
| 426 | // Copy cache | 418 | // Copy cache |
| 427 | - m_solidangle = app.m_solidangle; | ||
| 428 | - m_dirs = app.m_dirs; | 419 | + m_solidangle = app.m_solidangle; |
| 420 | + m_dirs = app.m_dirs; | ||
| 421 | + m_cos_roiradius = app.m_cos_roiradius; | ||
| 422 | + m_cos_inradius = app.m_cos_inradius; | ||
| 423 | + m_cos_outradius = app.m_cos_outradius; | ||
| 429 | 424 | ||
| 430 | // Return | 425 | // Return |
| 431 | return; | 426 | return; |
| @@ -453,41 +448,92 @@ void ctskymap::free_members(void) | @@ -453,41 +448,92 @@ void ctskymap::free_members(void) | ||
| 453 | ***************************************************************************/ | 448 | ***************************************************************************/ |
| 454 | void ctskymap::get_parameters(void) | 449 | void ctskymap::get_parameters(void) |
| 455 | { | 450 | { |
| 456 | - // Setup observations from "inobs" parameter. Do not request response | ||
| 457 | - // information and do not accept counts cubes. | ||
| 458 | - setup_observations(m_obs, false, true, false); | 451 | + // So far we have no valid input map |
| 452 | + m_has_inmap = false; | ||
| 453 | + | ||
| 454 | + // If an input map was specified then extract try loading the COUNTS | ||
| 455 | + // and ACCEPTANCE extensions from that file | ||
| 456 | + GFilename inmap = (*this)["inmap"].filename(); | ||
| 457 | + if (inmap != "NONE") { | ||
| 458 | + GFits fits(inmap); | ||
| 459 | + if (fits.contains("COUNTS") && fits.contains("ACCEPTANCE")) { | ||
| 460 | + | ||
| 461 | + // Get HDUs | ||
| 462 | + GFitsHDU &counts = *fits["COUNTS"]; | ||
| 463 | + GFitsHDU &acceptance = *fits["ACCEPTANCE"]; | ||
| 464 | + | ||
| 465 | + // Read counts and acceptance map | ||
| 466 | + m_counts.read(counts); | ||
| 467 | + m_acceptance.read(acceptance); | ||
| 459 | 468 | ||
| 460 | - // Create sky map based on task parameters | ||
| 461 | - m_skymap = create_map(m_obs); | 469 | + // Extract OGIP parameters |
| 470 | + read_ogip_keywords(&counts); | ||
| 462 | 471 | ||
| 463 | - // Get further parameters | ||
| 464 | - m_emin = (*this)["emin"].real(); | ||
| 465 | - m_emax = (*this)["emax"].real(); | 472 | + // Extract energy range |
| 473 | + m_emin = (counts.has_card("E_MIN")) ? counts.real("E_MIN") : 0.0; | ||
| 474 | + m_emax = (counts.has_card("E_MAX")) ? counts.real("E_MAX") : 0.0; | ||
| 475 | + | ||
| 476 | + // Signal availability of sky map | ||
| 477 | + m_has_inmap = true; | ||
| 478 | + } | ||
| 479 | + else { | ||
| 480 | + std::string msg = "Input sky map \""+inmap.url()+"\" does not " | ||
| 481 | + "contain \"COUNTS\" and \"ACCEPTANCE\" " | ||
| 482 | + "extensions."; | ||
| 483 | + throw GException::invalid_value(G_GET_PARAMETERS, msg); | ||
| 484 | + } | ||
| 485 | + fits.close(); | ||
| 486 | + } | ||
| 487 | + | ||
| 488 | + // If no valid input map exists then request observations | ||
| 489 | + if (!m_has_inmap) { | ||
| 490 | + | ||
| 491 | + // Setup observations from "inobs" parameter. Do not request response | ||
| 492 | + // information and do not accept counts cubes. | ||
| 493 | + setup_observations(m_obs, false, true, false); | ||
| 494 | + | ||
| 495 | + // Create counts and acceptance maps from the User parameters | ||
| 496 | + m_counts = create_map(m_obs); | ||
| 497 | + m_acceptance = m_counts; | ||
| 498 | + | ||
| 499 | + // Get further parameters | ||
| 500 | + m_emin = (*this)["emin"].real(); | ||
| 501 | + m_emax = (*this)["emax"].real(); | ||
| 502 | + | ||
| 503 | + } // endif: no valid input map existed | ||
| 504 | + | ||
| 505 | + // Get background method | ||
| 466 | m_bkgsubtract = (*this)["bkgsubtract"].string(); | 506 | m_bkgsubtract = (*this)["bkgsubtract"].string(); |
| 467 | 507 | ||
| 468 | // Get RING background parameters | 508 | // Get RING background parameters |
| 469 | if (m_bkgsubtract == "RING") { | 509 | if (m_bkgsubtract == "RING") { |
| 470 | 510 | ||
| 471 | // Get parameters | 511 | // Get parameters |
| 472 | - m_roiradius = (*this)["roiradius"].real(); | ||
| 473 | - m_inradius = (*this)["inradius"].real(); | ||
| 474 | - m_outradius = (*this)["outradius"].real(); | 512 | + m_roiradius = (*this)["roiradius"].real(); |
| 513 | + m_inradius = (*this)["inradius"].real(); | ||
| 514 | + m_outradius = (*this)["outradius"].real(); | ||
| 515 | + m_iterations = (*this)["iterations"].integer(); | ||
| 516 | + if (m_iterations > 0) { | ||
| 517 | + m_threshold = (*this)["threshold"].real(); | ||
| 518 | + } | ||
| 519 | + m_inexclusion = (*this)["inexclusion"].filename(); | ||
| 520 | + m_usefft = (*this)["usefft"].boolean(); | ||
| 475 | 521 | ||
| 476 | // Make sure that (roiradius < inradius < outradius) | 522 | // Make sure that (roiradius < inradius < outradius) |
| 477 | if (m_roiradius > m_inradius) { | 523 | if (m_roiradius > m_inradius) { |
| 478 | - std::string msg("'roiradius' must be smaller than 'inradius'"); | 524 | + std::string msg("\"roiradius\" must be smaller than \"inradius\""); |
| 479 | throw GException::invalid_value(G_GET_PARAMETERS, msg); | 525 | throw GException::invalid_value(G_GET_PARAMETERS, msg); |
| 480 | } | 526 | } |
| 481 | else if (m_inradius > m_outradius) { | 527 | else if (m_inradius > m_outradius) { |
| 482 | - std::string msg("'inradius' must be smaller than 'outradius'"); | 528 | + std::string msg("\"inradius\" must be smaller than \"outradius\""); |
| 483 | throw GException::invalid_value(G_GET_PARAMETERS, msg); | 529 | throw GException::invalid_value(G_GET_PARAMETERS, msg); |
| 484 | } | 530 | } |
| 485 | 531 | ||
| 486 | } // endif: read RING background parameters | 532 | } // endif: read RING background parameters |
| 487 | 533 | ||
| 488 | - // If IRF background subtraction is requested then make sure that the | ||
| 489 | - // CTA observations in the observation container have response information | ||
| 490 | - if (m_bkgsubtract != "NONE") { | 534 | + // If background subtraction is requested then make sure that the CTA |
| 535 | + // observations in the observation container have response information | ||
| 536 | + if (m_bkgsubtract != "NONE" && !m_has_inmap) { | ||
| 491 | set_response(m_obs); | 537 | set_response(m_obs); |
| 492 | } | 538 | } |
| 493 | 539 | ||
| @@ -497,39 +543,209 @@ void ctskymap::get_parameters(void) | @@ -497,39 +543,209 @@ void ctskymap::get_parameters(void) | ||
| 497 | 543 | ||
| 498 | // Read ahead parameters | 544 | // Read ahead parameters |
| 499 | if (read_ahead()) { | 545 | if (read_ahead()) { |
| 500 | - m_outmap = (*this)["outmap"].filename(); | 546 | + m_outmap = (*this)["outmap"].filename(); |
| 501 | } | 547 | } |
| 502 | 548 | ||
| 549 | + // Write parameters into logger | ||
| 550 | + log_parameters(TERSE); | ||
| 551 | + | ||
| 552 | + // Return | ||
| 553 | + return; | ||
| 554 | +} | ||
| 555 | + | ||
| 556 | + | ||
| 557 | +/***********************************************************************//** | ||
| 558 | + * @brief Setup maps | ||
| 559 | + * | ||
| 560 | + * Setup maps for sky map generation. | ||
| 561 | + ***************************************************************************/ | ||
| 562 | +void ctskymap::setup_maps(void) | ||
| 563 | +{ | ||
| 564 | + // Clear cache | ||
| 565 | + m_solidangle.clear(); | ||
| 566 | + m_dirs.clear(); | ||
| 567 | + | ||
| 503 | // Create background map and significance map if background subtraction | 568 | // Create background map and significance map if background subtraction |
| 504 | // is requested | 569 | // is requested |
| 505 | if (m_bkgsubtract != "NONE") { | 570 | if (m_bkgsubtract != "NONE") { |
| 506 | 571 | ||
| 507 | - // Create backgrond and significance maps | ||
| 508 | - m_bkgmap = create_map(m_obs); | ||
| 509 | - m_sigmap = create_map(m_obs); | ||
| 510 | - | ||
| 511 | // Setup the exclusions map | 572 | // Setup the exclusions map |
| 512 | - map_exclusions((*this)["inexclusion"].filename()); | 573 | + setup_exclusion_map(m_inexclusion); |
| 513 | 574 | ||
| 514 | // Cache the pixel solid angles and sky directions | 575 | // Cache the pixel solid angles and sky directions |
| 515 | - m_solidangle.reserve(m_bkgmap.npix()); | ||
| 516 | - m_dirs.reserve(m_bkgmap.npix()); | ||
| 517 | - for (int i = 0; i < m_bkgmap.npix(); ++i) { | ||
| 518 | - m_solidangle.push_back(m_bkgmap.solidangle(i)); | ||
| 519 | - m_dirs.push_back(m_bkgmap.inx2dir(i)); | 576 | + m_solidangle.reserve(m_counts.npix()); |
| 577 | + m_dirs.reserve(m_counts.npix()); | ||
| 578 | + for (int i = 0; i < m_counts.npix(); ++i) { | ||
| 579 | + m_solidangle.push_back(m_counts.solidangle(i)); | ||
| 580 | + m_dirs.push_back(m_counts.inx2dir(i)); | ||
| 520 | } | 581 | } |
| 521 | 582 | ||
| 522 | - // If doing a ring background subtraction, generate an alpha map and | ||
| 523 | - // make sure to cache the counts for each observation | ||
| 524 | - if (m_bkgsubtract == "RING") { | ||
| 525 | - m_alphamap = create_map(m_obs); | ||
| 526 | - m_onmap = create_map(m_obs); | 583 | + } // endif: background subtraction selected |
| 584 | + | ||
| 585 | + // Compute cosine of ring radii for RING background method | ||
| 586 | + if (m_bkgsubtract == "RING") { | ||
| 587 | + m_cos_roiradius = std::cos(m_roiradius * gammalib::deg2rad); | ||
| 588 | + m_cos_inradius = std::cos(m_inradius * gammalib::deg2rad); | ||
| 589 | + m_cos_outradius = std::cos(m_outradius * gammalib::deg2rad); | ||
| 590 | + } | ||
| 591 | + | ||
| 592 | + // Return | ||
| 593 | + return; | ||
| 594 | +} | ||
| 595 | + | ||
| 596 | + | ||
| 597 | +/***********************************************************************//** | ||
| 598 | + * @brief Generates map of pixel exclusions | ||
| 599 | + * | ||
| 600 | + * @param[in] filename Exclusion file name. | ||
| 601 | + * | ||
| 602 | + * Generates a sky map of the pixels that are to be excluded from the | ||
| 603 | + * background estimation. Pixels with values different from 0 will be | ||
| 604 | + * excluded. | ||
| 605 | + ***************************************************************************/ | ||
| 606 | +void ctskymap::setup_exclusion_map(const GFilename& filename) | ||
| 607 | +{ | ||
| 608 | + // Create exlusion map | ||
| 609 | + m_exclmap = m_counts; | ||
| 610 | + | ||
| 611 | + // Set all pixels to 0 (no pixel excluded) | ||
| 612 | + m_exclmap = 0.0; | ||
| 613 | + | ||
| 614 | + // Make sure the exclusions filename is valid | ||
| 615 | + if (is_valid_filename(filename)) { | ||
| 616 | + | ||
| 617 | + // Fill the exclusions based on the regions supplied | ||
| 618 | + if (filename.is_fits()) { | ||
| 619 | + setup_exclusion_map_fits(filename); | ||
| 620 | + } | ||
| 621 | + else { | ||
| 622 | + setup_exclusion_map_region(filename); | ||
| 527 | } | 623 | } |
| 528 | 624 | ||
| 529 | - } // endif: background subtraction selected | 625 | + } // endif: filename was valid |
| 530 | 626 | ||
| 531 | - // Write parameters into logger | ||
| 532 | - log_parameters(TERSE); | 627 | + // Return |
| 628 | + return; | ||
| 629 | +} | ||
| 630 | + | ||
| 631 | + | ||
| 632 | +/***********************************************************************//** | ||
| 633 | + * @brief Fills exclusions map from FITS image | ||
| 634 | + * | ||
| 635 | + * @param[in] filename FITS image file name. | ||
| 636 | + * | ||
| 637 | + * Sets all exclusion map pixels to 1 that correspond to non-zero pixels in | ||
| 638 | + * the exclusion sky map FITS file. | ||
| 639 | + ***************************************************************************/ | ||
| 640 | +void ctskymap::setup_exclusion_map_fits(const GFilename& filename) | ||
| 641 | +{ | ||
| 642 | + // Load the fits image | ||
| 643 | + GSkyMap inmap(filename); | ||
| 644 | + | ||
| 645 | + // Loop through the individual pixels in the exclusion map | ||
| 646 | + for (int i = 0; i < m_exclmap.npix(); ++i) { | ||
| 647 | + | ||
| 648 | + // Get the pixel direction | ||
| 649 | + GSkyDir dir = m_exclmap.pix2dir(i); | ||
| 650 | + | ||
| 651 | + // Check this sky position in the fits map | ||
| 652 | + if (inmap.contains(dir) && (inmap(inmap.dir2inx(dir)) != 0.0)) { | ||
| 653 | + | ||
| 654 | + // Set the pixel to 1 | ||
| 655 | + m_exclmap(i) = 1.0; | ||
| 656 | + | ||
| 657 | + } // endif: pixel,region overlap check | ||
| 658 | + | ||
| 659 | + } // endfor: looped over exclusion map pixels | ||
| 660 | + | ||
| 661 | + // Return | ||
| 662 | + return; | ||
| 663 | +} | ||
| 664 | + | ||
| 665 | + | ||
| 666 | +/***********************************************************************//** | ||
| 667 | + * @brief Fills exclusions map from DS9 region file | ||
| 668 | + * | ||
| 669 | + * @param[in] filename DS9 region file name. | ||
| 670 | + * | ||
| 671 | + * Sets all exclusion map pixels to 1 that are contained in any of the DS9 | ||
| 672 | + * regions. | ||
| 673 | + ***************************************************************************/ | ||
| 674 | +void ctskymap::setup_exclusion_map_region(const GFilename& filename) | ||
| 675 | +{ | ||
| 676 | + // Load the exclusion regions | ||
| 677 | + GSkyRegions regions(filename); | ||
| 678 | + | ||
| 679 | + // Loop through the individual pixels in the exclusion map | ||
| 680 | + for (int i = 0; i < m_exclmap.npix(); ++i) { | ||
| 681 | + | ||
| 682 | + // Get the pixel position | ||
| 683 | + GSkyDir dir = m_exclmap.pix2dir(i); | ||
| 684 | + | ||
| 685 | + // If pixel position overlaps with the regions | ||
| 686 | + if (regions.contains(dir)) { | ||
| 687 | + m_exclmap(i) = 1.0; | ||
| 688 | + } | ||
| 689 | + | ||
| 690 | + } // endfor: looped over exclusion map pixels | ||
| 691 | + | ||
| 692 | + // Return | ||
| 693 | + return; | ||
| 694 | +} | ||
| 695 | + | ||
| 696 | + | ||
| 697 | +/***********************************************************************//** | ||
| 698 | + * @brief Fill maps from observation container | ||
| 699 | + * | ||
| 700 | + * Fill counts and optionally acceptance maps from data in the observation | ||
| 701 | + * container. | ||
| 702 | + ***************************************************************************/ | ||
| 703 | +void ctskymap::fill_maps(void) | ||
| 704 | +{ | ||
| 705 | + // Write input observation container into logger | ||
| 706 | + log_observations(NORMAL, m_obs, "Input observation"); | ||
| 707 | + | ||
| 708 | + // Write header into logger | ||
| 709 | + log_header1(TERSE, gammalib::number("Find unbinned observation", | ||
| 710 | + m_obs.size())); | ||
| 711 | + | ||
| 712 | + // Find all unbinned CTA observations in m_obs | ||
| 713 | + std::vector<GCTAObservation*> obs_list(0); | ||
| 714 | + for (GCTAObservation* obs = first_unbinned_observation(); obs != NULL; | ||
| 715 | + obs = next_unbinned_observation()) { | ||
| 716 | + | ||
| 717 | + // Push observation into list | ||
| 718 | + obs_list.push_back(obs); | ||
| 719 | + | ||
| 720 | + // Write message | ||
| 721 | + std::string msg = " Including unbinned "+obs->instrument()+ | ||
| 722 | + " observation"; | ||
| 723 | + log_string(NORMAL, msg); | ||
| 724 | + } | ||
| 725 | + | ||
| 726 | + // Write header into logger | ||
| 727 | + log_header1(TERSE, gammalib::number("Fill map from observation", | ||
| 728 | + m_obs.size())); | ||
| 729 | + | ||
| 730 | + // Loop over all unbinned CTA observations in the container | ||
| 731 | + #pragma omp parallel for | ||
| 732 | + for (int i = 0; i < obs_list.size(); ++i) { | ||
| 733 | + | ||
| 734 | + // Get pointer to observation | ||
| 735 | + GCTAObservation* obs = obs_list[i]; | ||
| 736 | + | ||
| 737 | + // Fill events into counts map | ||
| 738 | + fill_maps_counts(obs); | ||
| 739 | + | ||
| 740 | + // Optionally compute acceptance sky map | ||
| 741 | + if (m_bkgsubtract != "NONE") { | ||
| 742 | + fill_maps_acceptance(obs); | ||
| 743 | + } | ||
| 744 | + | ||
| 745 | + // Dispose events to free memory | ||
| 746 | + obs->dispose_events(); | ||
| 747 | + | ||
| 748 | + } // endfor: looped over observations | ||
| 533 | 749 | ||
| 534 | // Return | 750 | // Return |
| 535 | return; | 751 | return; |
| @@ -537,16 +753,17 @@ void ctskymap::get_parameters(void) | @@ -537,16 +753,17 @@ void ctskymap::get_parameters(void) | ||
| 537 | 753 | ||
| 538 | 754 | ||
| 539 | /***********************************************************************//** | 755 | /***********************************************************************//** |
| 540 | - * @brief Map events into a sky map | 756 | + * @brief Fill events into counts map |
| 541 | * | 757 | * |
| 542 | * @param[in] obs CTA observation. | 758 | * @param[in] obs CTA observation. |
| 543 | * | 759 | * |
| 544 | * @exception GException::no_list | 760 | * @exception GException::no_list |
| 545 | * No event list found in observation. | 761 | * No event list found in observation. |
| 546 | * | 762 | * |
| 547 | - * This method maps the events found in a CTA events list into a sky map. | 763 | + * Fills the events found in a CTA events list into a sky map. The method |
| 764 | + * adds the events to the m_counts member. | ||
| 548 | ***************************************************************************/ | 765 | ***************************************************************************/ |
| 549 | -void ctskymap::map_events(GCTAObservation* obs) | 766 | +void ctskymap::fill_maps_counts(GCTAObservation* obs) |
| 550 | { | 767 | { |
| 551 | // Get non-const pointer on a CTA event list | 768 | // Get non-const pointer on a CTA event list |
| 552 | GCTAEventList* events = dynamic_cast<GCTAEventList*> | 769 | GCTAEventList* events = dynamic_cast<GCTAEventList*> |
| @@ -589,11 +806,11 @@ void ctskymap::map_events(GCTAObservation* obs) | @@ -589,11 +806,11 @@ void ctskymap::map_events(GCTAObservation* obs) | ||
| 589 | // Determine sky pixel | 806 | // Determine sky pixel |
| 590 | GCTAInstDir* inst = (GCTAInstDir*)&(event->dir()); | 807 | GCTAInstDir* inst = (GCTAInstDir*)&(event->dir()); |
| 591 | GSkyDir dir = inst->dir(); | 808 | GSkyDir dir = inst->dir(); |
| 592 | - GSkyPixel pixel = m_skymap.dir2pix(dir); | 809 | + GSkyPixel pixel = m_counts.dir2pix(dir); |
| 593 | 810 | ||
| 594 | // Skip if pixel is out of range | 811 | // Skip if pixel is out of range |
| 595 | - if (pixel.x() < -0.5 || pixel.x() > (m_skymap.nx() - 0.5) || | ||
| 596 | - pixel.y() < -0.5 || pixel.y() > (m_skymap.ny() - 0.5)) { | 812 | + if (pixel.x() < -0.5 || pixel.x() > (m_counts.nx() - 0.5) || |
| 813 | + pixel.y() < -0.5 || pixel.y() > (m_counts.ny() - 0.5)) { | ||
| 597 | num_outside_map++; | 814 | num_outside_map++; |
| 598 | continue; | 815 | continue; |
| 599 | } | 816 | } |
| @@ -605,49 +822,25 @@ void ctskymap::map_events(GCTAObservation* obs) | @@ -605,49 +822,25 @@ void ctskymap::map_events(GCTAObservation* obs) | ||
| 605 | } | 822 | } |
| 606 | 823 | ||
| 607 | // Fill event in skymap | 824 | // Fill event in skymap |
| 608 | - m_skymap(pixel, 0) += 1.0; | 825 | + #pragma omp critical(ctskymap_map_events) |
| 826 | + m_counts(pixel) += 1.0; | ||
| 609 | num_in_map++; | 827 | num_in_map++; |
| 610 | - | 828 | + |
| 611 | } // endfor: looped over all events | 829 | } // endfor: looped over all events |
| 612 | 830 | ||
| 613 | // Log binning results | 831 | // Log binning results |
| 614 | - log_value(NORMAL, "Events in list", obs->events()->size()); | ||
| 615 | - log_value(NORMAL, "Events in map", num_in_map); | ||
| 616 | - log_value(NORMAL, "Events outside RoI", num_outside_roi); | ||
| 617 | - log_value(NORMAL, "Events outside map area", num_outside_map); | ||
| 618 | - log_value(NORMAL, "Events outside energies", num_outside_erange); | ||
| 619 | - | ||
| 620 | - // Write sky map into header | ||
| 621 | - log_header1(EXPLICIT, "Sky map"); | ||
| 622 | - log_string(EXPLICIT, m_skymap.print(m_chatter)); | ||
| 623 | - | ||
| 624 | - // Return | ||
| 625 | - return; | ||
| 626 | -} | ||
| 627 | - | ||
| 628 | - | ||
| 629 | -/***********************************************************************//** | ||
| 630 | - * @brief Estimates the background in sky map for observation | ||
| 631 | - * | ||
| 632 | - * @param[in] obs CTA observation. | ||
| 633 | - * | ||
| 634 | - * Estimates the background in the sky map for a given observation and adds | ||
| 635 | - * this estimate to the background sky map. The background estimation method | ||
| 636 | - * is specified by the "bkgsubtract" parameter which can take the following | ||
| 637 | - * values: | ||
| 638 | - * | ||
| 639 | - * NONE - No background estimation | ||
| 640 | - * IRF - Background estimation based on IRF template | ||
| 641 | - * RING - Ring background estimation | ||
| 642 | - ***************************************************************************/ | ||
| 643 | -void ctskymap::map_background(GCTAObservation* obs) | ||
| 644 | -{ | ||
| 645 | - // Dispatch to appropriate background estimation method | ||
| 646 | - if (m_bkgsubtract == "IRF") { | ||
| 647 | - map_background_irf(obs); | ||
| 648 | - } | ||
| 649 | - else if (m_bkgsubtract == "RING") { | ||
| 650 | - map_background_ring(obs); | 832 | + #pragma omp critical(ctskymap_map_events) |
| 833 | + { | ||
| 834 | + log_header3(TERSE, get_obs_header(obs)); | ||
| 835 | + log_value(NORMAL, "Events in list", obs->events()->size()); | ||
| 836 | + log_value(NORMAL, "Events in map", num_in_map); | ||
| 837 | + log_value(NORMAL, "Events outside RoI", num_outside_roi); | ||
| 838 | + log_value(NORMAL, "Events outside map area", num_outside_map); | ||
| 839 | + log_value(NORMAL, "Events outside energies", num_outside_erange); | ||
| 840 | + | ||
| 841 | + // Write sky map into header | ||
| 842 | + log_header1(EXPLICIT, "Sky map"); | ||
| 843 | + log_string(EXPLICIT, m_counts.print(m_chatter)); | ||
| 651 | } | 844 | } |
| 652 | 845 | ||
| 653 | // Return | 846 | // Return |
| @@ -656,7 +849,7 @@ void ctskymap::map_background(GCTAObservation* obs) | @@ -656,7 +849,7 @@ void ctskymap::map_background(GCTAObservation* obs) | ||
| 656 | 849 | ||
| 657 | 850 | ||
| 658 | /***********************************************************************//** | 851 | /***********************************************************************//** |
| 659 | - * @brief Estimates the background in sky map based on IRF template | 852 | + * @brief Compute background acceptance sky map based on IRF template |
| 660 | * | 853 | * |
| 661 | * @param[in] obs CTA observation. | 854 | * @param[in] obs CTA observation. |
| 662 | * | 855 | * |
| @@ -664,14 +857,14 @@ void ctskymap::map_background(GCTAObservation* obs) | @@ -664,14 +857,14 @@ void ctskymap::map_background(GCTAObservation* obs) | ||
| 664 | * No response information available for observation. | 857 | * No response information available for observation. |
| 665 | * No background template available in instrument response function. | 858 | * No background template available in instrument response function. |
| 666 | * | 859 | * |
| 667 | - * Estimates the background in the sky map using the IRF template for a given | ||
| 668 | - * observation and adds this estimate to the background sky map. The IRF | ||
| 669 | - * template is integrated numerically in energy. | 860 | + * Computes a background acceptance sky map using the IRF template for a |
| 861 | + * given observation and adds the estimate to the acceptance sky map. | ||
| 670 | ***************************************************************************/ | 862 | ***************************************************************************/ |
| 671 | -void ctskymap::map_background_irf(GCTAObservation* obs) | 863 | +void ctskymap::fill_maps_acceptance(GCTAObservation* obs) |
| 672 | { | 864 | { |
| 673 | // Get IRF response | 865 | // Get IRF response |
| 674 | - const GCTAResponseIrf* rsp = dynamic_cast<const GCTAResponseIrf*>(obs->response()); | 866 | + const GCTAResponseIrf* rsp = dynamic_cast<const GCTAResponseIrf*> |
| 867 | + (obs->response()); | ||
| 675 | 868 | ||
| 676 | // Throw an exception if observation has no instrument response function | 869 | // Throw an exception if observation has no instrument response function |
| 677 | if (rsp == NULL) { | 870 | if (rsp == NULL) { |
| @@ -694,60 +887,58 @@ void ctskymap::map_background_irf(GCTAObservation* obs) | @@ -694,60 +887,58 @@ void ctskymap::map_background_irf(GCTAObservation* obs) | ||
| 694 | throw GException::invalid_value(G_MAP_BACKGROUND_IRF, msg); | 887 | throw GException::invalid_value(G_MAP_BACKGROUND_IRF, msg); |
| 695 | } | 888 | } |
| 696 | 889 | ||
| 697 | - // Compute natural logarithm of energy range in MeV | ||
| 698 | - double lnEmin = std::log(m_emin * 1.0e6); | ||
| 699 | - double lnEmax = std::log(m_emax * 1.0e6); | 890 | + // Set minimum and maximum energy as GEnergy instances |
| 891 | + GEnergy emin(m_emin, "TeV"); | ||
| 892 | + GEnergy emax(m_emax, "TeV"); | ||
| 700 | 893 | ||
| 701 | - // Extract region of interest from observation | ||
| 702 | - GCTARoi roi = obs->roi(); | 894 | + // Extract region of interest center and radius from observation and |
| 895 | + // compute the cosine of the RoI radius. This allows to mimimize as | ||
| 896 | + // much as possible the trigonometric computations. Note that the cosine | ||
| 897 | + // of an angle is maximal for an angle of zero. This explains later why | ||
| 898 | + // we chose ">=" to test whether an angle is smaller than a given radius. | ||
| 899 | + GSkyDir roi_centre = obs->roi().centre().dir(); | ||
| 900 | + double cos_roi_radius = std::cos(obs->roi().radius() * gammalib::deg2rad); | ||
| 901 | + | ||
| 902 | + // Extract exposure | ||
| 903 | + double exposure = obs->livetime(); | ||
| 703 | 904 | ||
| 704 | // Initialise statistics | 905 | // Initialise statistics |
| 705 | - int calls = 0; | ||
| 706 | double total = 0.0; | 906 | double total = 0.0; |
| 707 | 907 | ||
| 708 | - // Loop over all background map pixels | ||
| 709 | - for (int i = 0; i < m_bkgmap.npix(); ++i) { | 908 | + // Loop over all acceptance map pixels |
| 909 | + for (int i = 0; i < m_acceptance.npix(); ++i) { | ||
| 710 | 910 | ||
| 711 | // Get sky direction of pixel | 911 | // Get sky direction of pixel |
| 712 | - GSkyDir skydir = m_bkgmap.inx2dir(i); | ||
| 713 | - | ||
| 714 | - // Convert sky direction in instrument direction | ||
| 715 | - GCTAInstDir instdir = obs->pointing().instdir(skydir); | 912 | + GSkyDir& skydir = m_dirs[i]; |
| 716 | 913 | ||
| 717 | - // If RoI is valid and instrument direction is not within RoI then | ||
| 718 | - // skip pixel | ||
| 719 | - if (roi.is_valid() && !roi.contains(instdir)) { | 914 | + // Skip pixel if it is not within the RoI |
| 915 | + if (roi_centre.cos_dist(skydir) < cos_roi_radius) { | ||
| 720 | continue; | 916 | continue; |
| 721 | } | 917 | } |
| 722 | 918 | ||
| 723 | - // Setup integration function | ||
| 724 | - ctskymap::irf_kern integrand(bkg, &instdir); | ||
| 725 | - GIntegral integral(&integrand); | ||
| 726 | - | ||
| 727 | - // Set precision (has been carefully adjusted using a test simulation | ||
| 728 | - // over the energy range 20 GeV - 120 TeV) | ||
| 729 | - integral.eps(1.0e-6); | 919 | + // Convert sky direction to instrument direction |
| 920 | + GCTAInstDir instdir = obs->pointing().instdir(skydir); | ||
| 730 | 921 | ||
| 731 | - // Do Romberg integration | ||
| 732 | - double value = integral.romberg(lnEmin, lnEmax); | 922 | + // Compute background value |
| 923 | + double value = bkg->rate_ebin(instdir, emin, emax); | ||
| 733 | 924 | ||
| 734 | - // Update number of background function calls | ||
| 735 | - calls += integral.calls(); | ||
| 736 | - | ||
| 737 | // Multiply background rate with livetime and solid angle | 925 | // Multiply background rate with livetime and solid angle |
| 738 | - value *= obs->livetime() * m_solidangle[i]; | 926 | + value *= exposure * m_solidangle[i]; |
| 739 | 927 | ||
| 740 | - // Add number of background events to background map | ||
| 741 | - m_bkgmap(i,0) += value; | 928 | + // Add number of background events to acceptance map |
| 929 | + #pragma omp critical(ctskymap_map_acceptance) | ||
| 930 | + m_acceptance(i) += value; | ||
| 742 | 931 | ||
| 743 | // Update total number of background events | 932 | // Update total number of background events |
| 744 | total += value; | 933 | total += value; |
| 745 | 934 | ||
| 746 | - } // endfor: looped over background map pixels | 935 | + } // endfor: looped over acceptance map pixels |
| 747 | 936 | ||
| 748 | - // Log background subtraction results | ||
| 749 | - log_value(NORMAL, "Events in background", int(total+0.5)); | ||
| 750 | - log_value(NORMAL, "Background evaluations", calls); | 937 | + // Log acceptance results |
| 938 | + #pragma omp critical(ctskymap_map_events) | ||
| 939 | + { | ||
| 940 | + log_value(NORMAL, "Events in background", int(total+0.5)); | ||
| 941 | + } | ||
| 751 | 942 | ||
| 752 | // Return | 943 | // Return |
| 753 | return; | 944 | return; |
| @@ -755,97 +946,99 @@ void ctskymap::map_background_irf(GCTAObservation* obs) | @@ -755,97 +946,99 @@ void ctskymap::map_background_irf(GCTAObservation* obs) | ||
| 755 | 946 | ||
| 756 | 947 | ||
| 757 | /***********************************************************************//** | 948 | /***********************************************************************//** |
| 758 | - * @brief Estimates the background in sky map based on the ring background | ||
| 759 | - * method | 949 | + * @brief Compute sky map, background map and significance map |
| 760 | * | 950 | * |
| 761 | - * @param[in] obs CTA observation. | 951 | + * Computes the sky map, background map and significance map. The following |
| 952 | + * background subtraction methods are supported: | ||
| 762 | * | 953 | * |
| 763 | - * @exception GException::invalid_value | ||
| 764 | - * No response information available for observation. | ||
| 765 | - * No background template available in instrument response function. | 954 | + * NONE |
| 955 | + * ==== | ||
| 956 | + * | ||
| 957 | + * The sky map is simply the binned counts map, no background and | ||
| 958 | + * significance maps are computed. | ||
| 959 | + * | ||
| 960 | + * IRF | ||
| 961 | + * === | ||
| 962 | + * | ||
| 963 | + * The background map is the acceptance map, and this background map is | ||
| 964 | + * subtracted from the counts map and assigned to the sky map. The | ||
| 965 | + * significance \f$\sigma_i\f$ is computed assuming Poisson statistic in | ||
| 966 | + * the Gaussian limit, using | ||
| 967 | + * | ||
| 968 | + * \f[\sigma_i = \frac{N_i - B_i}{\sqrt{N_i}}\f] | ||
| 766 | * | 969 | * |
| 767 | - * Estimates the background in the sky map by summing the events within a | ||
| 768 | - * ring centered at a given pixel's position. The pixels in the ring are | ||
| 769 | - * weighted also by the background IRF value. | 970 | + * where |
| 971 | + * \f$N_i\f$ is the number of observed counts and | ||
| 972 | + * \f$B_i\f$ is the estimated number of background counts. | ||
| 973 | + * | ||
| 974 | + * RING | ||
| 975 | + * ==== | ||
| 976 | + * | ||
| 977 | + * For the @c RING method the Li & Ma significance is computed for each | ||
| 978 | + * pixel, using the @c roiradius, @c inradius and @c outradius parameters | ||
| 979 | + * to specify the radius of the On region and the Off background ring, | ||
| 980 | + * respectively. Depending on the @c usefft parameter, either an FFT is used | ||
| 981 | + * to compute the number of events and the acceptance of the On and Off | ||
| 982 | + * regions, or a direct computation is performed. While the former is faster | ||
| 983 | + * it is less accurate since it assumes Euclidean distances in the sky map. | ||
| 984 | + * The latter is slower but compute exact distance between pixels of the sky | ||
| 985 | + * map. Use FFT if the sky map is close to a cartesian grid, and use the | ||
| 986 | + * direct method if the sky map shows important distortions. | ||
| 770 | ***************************************************************************/ | 987 | ***************************************************************************/ |
| 771 | -void ctskymap::map_background_ring(GCTAObservation* obs) | 988 | +void ctskymap::compute_maps(void) |
| 772 | { | 989 | { |
| 773 | - // Get IRF response (to scale background counts) | ||
| 774 | - const GCTAResponseIrf* rsp = dynamic_cast<const GCTAResponseIrf*>(obs->response()); | 990 | + // Write header into logger |
| 991 | + log_header1(TERSE, "Compute maps"); | ||
| 775 | 992 | ||
| 776 | - // Throw an exception if observation has no instrument response function | ||
| 777 | - if (rsp == NULL) { | ||
| 778 | - std::string msg = "No response information available for "+ | ||
| 779 | - get_obs_header(obs)+" to compute IRF background. " | ||
| 780 | - "Please specify response information or use " | ||
| 781 | - "another background subtraction method."; | ||
| 782 | - throw GException::invalid_value(G_MAP_BACKGROUND_RING, msg); | 993 | + // If no background subtraction is requested then simply assign the |
| 994 | + // counts map to the skymap | ||
| 995 | + if (m_bkgsubtract == "NONE") { | ||
| 996 | + m_skymap = m_counts; | ||
| 783 | } | 997 | } |
| 784 | 998 | ||
| 785 | - // Get IRF background template | ||
| 786 | - const GCTABackground* bkg = rsp->background(); | ||
| 787 | - | ||
| 788 | - // Throw an exception if observation has no IRF background template | ||
| 789 | - if (bkg == NULL) { | ||
| 790 | - std::string msg = "No IRF background template found in instrument " | ||
| 791 | - "response function for "+ | ||
| 792 | - get_obs_header(obs)+". Please specify an instrument " | ||
| 793 | - "response function containing a background template."; | ||
| 794 | - throw GException::invalid_value(G_MAP_BACKGROUND_RING, msg); | 999 | + // else if IRF background is selected then use the acceptance as background |
| 1000 | + else if (m_bkgsubtract == "IRF") { | ||
| 1001 | + m_skymap = m_counts - m_acceptance; | ||
| 1002 | + m_bkgmap = m_acceptance; | ||
| 1003 | + m_sigmap = (m_counts - m_acceptance) / sqrt(m_counts); | ||
| 795 | } | 1004 | } |
| 796 | 1005 | ||
| 797 | - // Compute natural logarithm of energy range in MeV | ||
| 798 | - double lnEmin = std::log(m_emin * 1.0e6); | ||
| 799 | - double lnEmax = std::log(m_emax * 1.0e6); | ||
| 800 | - | ||
| 801 | - // Extract region of interest from observation | ||
| 802 | - GCTARoi roi = obs->roi(); | ||
| 803 | - | ||
| 804 | - // Initialise statistics | ||
| 805 | - int calls = 0; | ||
| 806 | - double exposure = obs->livetime(); | ||
| 807 | - | ||
| 808 | - // Loop over all map pixels | ||
| 809 | - for (int i = 0; i < m_bkgmap.npix(); ++i) { | ||
| 810 | - | ||
| 811 | - // Get sky direction of pixel | ||
| 812 | - GSkyDir& skydir = m_dirs[i]; | 1006 | + // else if RING background is selected then compute the On |
| 1007 | + else if (m_bkgsubtract == "RING") { | ||
| 813 | 1008 | ||
| 814 | - // Convert sky direction in instrument direction | ||
| 815 | - GCTAInstDir instdir = obs->pointing().instdir(skydir); | ||
| 816 | - | ||
| 817 | - // If RoI is valid and instrument direction is not within RoI then | ||
| 818 | - // skip pixel | ||
| 819 | - if (roi.is_valid() && !roi.contains(instdir)) { | ||
| 820 | - continue; | 1009 | + // Compute initial RING background |
| 1010 | + if (m_usefft) { | ||
| 1011 | + compute_maps_ring_fft(); | ||
| 1012 | + } | ||
| 1013 | + else { | ||
| 1014 | + compute_maps_ring_direct(); | ||
| 821 | } | 1015 | } |
| 822 | 1016 | ||
| 823 | - // Setup integration function | ||
| 824 | - ctskymap::irf_kern integrand(bkg, &instdir); | ||
| 825 | - GIntegral integral(&integrand); | ||
| 826 | - | ||
| 827 | - // Set precision | ||
| 828 | - integral.eps(1.0e-6); | ||
| 829 | - | ||
| 830 | - // Do Romberg integration to get the sensitivity (note: this assumes | ||
| 831 | - // the background IRF is a good approximation for the radial | ||
| 832 | - // sensitivity) | ||
| 833 | - m_alphamap(i,0) += integral.romberg(lnEmin, lnEmax) * | ||
| 834 | - m_solidangle[i] * exposure; | ||
| 835 | - | ||
| 836 | - // Store the counts in this bin | ||
| 837 | - m_onmap(i,0) += m_skymap(i,0); | 1017 | + // Store copy of exclusion regions |
| 1018 | + GSkyMap exclmap = m_exclmap; | ||
| 838 | 1019 | ||
| 839 | - // Update number of background function calls | ||
| 840 | - calls += integral.calls(); | 1020 | + // Iterative computation of exclusion regions |
| 1021 | + for (int iter = 0; iter < m_iterations; ++iter) { | ||
| 841 | 1022 | ||
| 842 | - } // endfor: Loop for caching bkg IRF sensitivity | 1023 | + // Set exclusion region from significance map |
| 1024 | + m_exclmap = exclmap; | ||
| 1025 | + for (int i = 0; i < m_exclmap.npix(); ++i) { | ||
| 1026 | + if (m_sigmap(i) > m_threshold) { | ||
| 1027 | + m_exclmap(i) = 1.0; | ||
| 1028 | + } | ||
| 1029 | + } | ||
| 1030 | + | ||
| 1031 | + // Re-compute RING background | ||
| 1032 | + if (m_usefft) { | ||
| 1033 | + compute_maps_ring_fft(); | ||
| 1034 | + } | ||
| 1035 | + else { | ||
| 1036 | + compute_maps_ring_direct(); | ||
| 1037 | + } | ||
| 843 | 1038 | ||
| 844 | - // Log background subtraction results | ||
| 845 | - log_value(NORMAL, "Alpha map evaluations", calls); | 1039 | + } // endfor: looped over iterations |
| 846 | 1040 | ||
| 847 | - // Zero out the counts map to prepare it for the next observation | ||
| 848 | - m_skymap = 0.0; | 1041 | + } |
| 849 | 1042 | ||
| 850 | // Return | 1043 | // Return |
| 851 | return; | 1044 | return; |
| @@ -853,24 +1046,85 @@ void ctskymap::map_background_ring(GCTAObservation* obs) | @@ -853,24 +1046,85 @@ void ctskymap::map_background_ring(GCTAObservation* obs) | ||
| 853 | 1046 | ||
| 854 | 1047 | ||
| 855 | /***********************************************************************//** | 1048 | /***********************************************************************//** |
| 856 | - * @brief Write keywords in FITS HDU | ||
| 857 | - * | ||
| 858 | - * @param[in,out] hdu Pointer to FITS HDU. | 1049 | + * @brief Compute the maps for RING background using a FFT |
| 859 | * | 1050 | * |
| 860 | - * Writes keywords in FITS HDU. | 1051 | + * Computes the Li & Ma significance for each sky map pixel and replaces |
| 1052 | + * the sky and background maps by the On- and Off-count maps. The computation | ||
| 1053 | + * is done using a FFT. | ||
| 861 | ***************************************************************************/ | 1054 | ***************************************************************************/ |
| 862 | -void ctskymap::write_hdu_keywords(GFitsHDU* hdu) const | 1055 | +void ctskymap::compute_maps_ring_fft(void) |
| 863 | { | 1056 | { |
| 864 | - // Continue only if pointer is valid | ||
| 865 | - if (hdu != NULL) { | 1057 | + // Log message about what is being done |
| 1058 | + log_header3(NORMAL, "Computing ring background map (FFT method)"); | ||
| 866 | 1059 | ||
| 867 | - // Set keywords | ||
| 868 | - hdu->card("BKGSUB", m_bkgsubtract, "Background substraction method"); | ||
| 869 | - hdu->card("E_MIN", m_emin, "[TeV] Lower energy boundary"); | ||
| 870 | - hdu->card("E_MAX", m_emax, "[TeV] Upper energy boundary"); | ||
| 871 | - hdu->card("EUNIT", "TeV", "Units for E_MIN and E_MAX"); | 1060 | + // Initialise maps |
| 1061 | + m_skymap = m_counts; | ||
| 1062 | + m_bkgmap = m_counts; | ||
| 1063 | + m_sigmap = m_counts; | ||
| 1064 | + m_skymap = 0.0; | ||
| 1065 | + m_bkgmap = 0.0; | ||
| 1066 | + m_sigmap = 0.0; | ||
| 872 | 1067 | ||
| 873 | - } // endif: pointer was valid | 1068 | + // Initialise statistics |
| 1069 | + int num_bad_alpha = 0; | ||
| 1070 | + | ||
| 1071 | + // Set-up sky and acceptance maps with excluded pixels according to the | ||
| 1072 | + // exclusion map | ||
| 1073 | + GSkyMap excl_counts = m_counts; | ||
| 1074 | + GSkyMap excl_acceptance = m_acceptance; | ||
| 1075 | + for (int i = 0; i < m_counts.npix(); ++i) { | ||
| 1076 | + if (m_exclmap(i) != 0.0) { | ||
| 1077 | + excl_counts(i) = 0.0; | ||
| 1078 | + excl_acceptance(i) = 0.0; | ||
| 1079 | + } | ||
| 1080 | + } | ||
| 1081 | + | ||
| 1082 | + // Convolve maps for On-region and Off-region | ||
| 1083 | + GSkyMap on_counts = ring_convolve(m_counts, 0.0, m_roiradius); | ||
| 1084 | + GSkyMap on_alpha = ring_convolve(m_acceptance, 0.0, m_roiradius); | ||
| 1085 | + GSkyMap off_counts = ring_convolve(excl_counts, m_inradius, m_outradius); | ||
| 1086 | + GSkyMap off_alpha = ring_convolve(excl_acceptance, m_inradius, m_outradius); | ||
| 1087 | + | ||
| 1088 | + // Compute maps by loop over sky map pixels | ||
| 1089 | + for (int i = 0; i < m_sigmap.npix(); ++i) { | ||
| 1090 | + | ||
| 1091 | + // Get On-counts, Off-counts and alpha value for this bin | ||
| 1092 | + double n_on = on_counts(i); | ||
| 1093 | + double n_off = off_counts(i); | ||
| 1094 | + double alpha; | ||
| 1095 | + if (off_alpha(i) == 0.0) { | ||
| 1096 | + alpha = 0.0; | ||
| 1097 | + n_on = 0.0; | ||
| 1098 | + n_off = 0.0; | ||
| 1099 | + } | ||
| 1100 | + else { | ||
| 1101 | + alpha = on_alpha(i) / off_alpha(i); | ||
| 1102 | + } | ||
| 1103 | + | ||
| 1104 | + // Store the On and alpha-weighted Off-counts | ||
| 1105 | + m_bkgmap(i) = alpha * n_off; | ||
| 1106 | + m_skymap(i) = n_on - m_bkgmap(i); | ||
| 1107 | + | ||
| 1108 | + // If alpha is zero then increment the bad alpha counter | ||
| 1109 | + if (alpha == 0.0) { | ||
| 1110 | + num_bad_alpha++; | ||
| 1111 | + } | ||
| 1112 | + | ||
| 1113 | + // ... otherwise compute and store the results | ||
| 1114 | + else { | ||
| 1115 | + m_sigmap(i) = sigma_li_ma(n_on, n_off, alpha); | ||
| 1116 | + } | ||
| 1117 | + | ||
| 1118 | + } // endfor: looped over all pixels | ||
| 1119 | + | ||
| 1120 | + // Log the number of bad-alpha bins | ||
| 1121 | + log_value(NORMAL, "Total number of pixels", m_sigmap.npix()); | ||
| 1122 | + log_value(NORMAL, "Pixels with alpha=0", num_bad_alpha); | ||
| 1123 | + | ||
| 1124 | + // Now take the square root. Since some bins can be negative, first | ||
| 1125 | + // take the absolute value of the map, square root that, then multiply | ||
| 1126 | + // each bin by its sign to preserve the +/- significance. | ||
| 1127 | + m_sigmap = sign(m_sigmap) * sqrt(abs(m_sigmap)); | ||
| 874 | 1128 | ||
| 875 | // Return | 1129 | // Return |
| 876 | return; | 1130 | return; |
| @@ -878,89 +1132,85 @@ void ctskymap::write_hdu_keywords(GFitsHDU* hdu) const | @@ -878,89 +1132,85 @@ void ctskymap::write_hdu_keywords(GFitsHDU* hdu) const | ||
| 878 | 1132 | ||
| 879 | 1133 | ||
| 880 | /***********************************************************************//** | 1134 | /***********************************************************************//** |
| 881 | - * @brief Computes the bin-by-bin significance if background subtraction | ||
| 882 | - * requested | 1135 | + * @brief Compute the pixel significance for RING background |
| 883 | * | 1136 | * |
| 884 | - * Method computes the bin-by bin significance if a background subtraction | ||
| 885 | - * method is specified. If method is "IRF", Poisson statistics (in the | ||
| 886 | - * Gaussian limit) are assumed. If method is "RING" a Li & Ma significance | ||
| 887 | - * is computed for each bin (as well as a map of the computed alpha values). | 1137 | + * Computes the Li & Ma significance for each sky map pixel and replaces |
| 1138 | + * the sky and background maps by the On- and Off-count maps. The computation | ||
| 1139 | + * is done by computing the exact distances between pixels in the sky map. | ||
| 888 | ***************************************************************************/ | 1140 | ***************************************************************************/ |
| 889 | -void ctskymap::map_significance(void) | 1141 | +void ctskymap::compute_maps_ring_direct(void) |
| 890 | { | 1142 | { |
| 891 | - // Compute significance from "RING" method (Li & Ma eq. 17) | ||
| 892 | - if (m_bkgsubtract == "RING") { | ||
| 893 | - | ||
| 894 | - // Log message about what is being done | ||
| 895 | - log_header1(NORMAL, "Computing Ring background map"); | ||
| 896 | - log_value(NORMAL, "Total pixels to process", m_onmap.npix()); | ||
| 897 | - | ||
| 898 | - // Store the number of bins with an inappropriate alpha parameter | ||
| 899 | - int num_bad_alpha = 0; | ||
| 900 | - | ||
| 901 | - // Loop through each bin in the on-counts map | ||
| 902 | - for (int i = 0; i < m_onmap.npix(); ++i) { | ||
| 903 | - | ||
| 904 | - // Initialise the on/off counts and alpha for this bin | ||
| 905 | - double n_on = 0.0; | ||
| 906 | - double n_off = 0.0; | ||
| 907 | - double alpha = 0.0; | 1143 | + // Log message about what is being done |
| 1144 | + log_header3(NORMAL, "Computing ring background map (direct method)"); | ||
| 1145 | + log_value(NORMAL, "Total pixels to process", m_counts.npix()); | ||
| 1146 | + | ||
| 1147 | + // Initialise maps | ||
| 1148 | + m_skymap = m_counts; | ||
| 1149 | + m_bkgmap = m_counts; | ||
| 1150 | + m_sigmap = m_counts; | ||
| 1151 | + m_skymap = 0.0; | ||
| 1152 | + m_bkgmap = 0.0; | ||
| 1153 | + m_sigmap = 0.0; | ||
| 908 | 1154 | ||
| 909 | - // Since this can take a long time, keep the user updated on | ||
| 910 | - // the progress when another 10% of pixels is processed | ||
| 911 | - if (i % (m_onmap.npix()/10) == 0) { | ||
| 912 | - log_value(NORMAL, "Pixels remaining", m_onmap.npix()-i); | ||
| 913 | - } | 1155 | + // Initialise statistics |
| 1156 | + int num_bad_alpha = 0; | ||
| 1157 | + | ||
| 1158 | + // Set progress logging frequency. By default the user is updated on the | ||
| 1159 | + // progress when another 10% of pixels is processed, however, if there | ||
| 1160 | + // are many pixels the user is updated each 100000 pixels. | ||
| 1161 | + int n_logpix = m_counts.npix() / 10; | ||
| 1162 | + if (n_logpix > 100000) { | ||
| 1163 | + n_logpix = 100000; | ||
| 1164 | + } | ||
| 914 | 1165 | ||
| 915 | - // Get bin coordinates | ||
| 916 | - GSkyDir& skydir = m_dirs[i]; | 1166 | + // Compute maps by loop over sky map pixels |
| 1167 | + #pragma omp parallel for | ||
| 1168 | + for (int i = 0; i < m_sigmap.npix(); ++i) { | ||
| 917 | 1169 | ||
| 918 | - // Compute the alpha and counts for this bin | ||
| 919 | - compute_ring_values(m_onmap, m_alphamap, skydir, | ||
| 920 | - n_on, n_off, alpha); | 1170 | + // Initialise the on/off counts and alpha for this bin |
| 1171 | + double n_on = 0.0; | ||
| 1172 | + double n_off = 0.0; | ||
| 1173 | + double alpha = 0.0; | ||
| 921 | 1174 | ||
| 922 | - // If alpha is zero then increment the bad alpha counter | ||
| 923 | - if (alpha == 0.0) { | ||
| 924 | - num_bad_alpha++; | ||
| 925 | - } | 1175 | + // Update user about progress (only if there are more than 10000 pixels) |
| 1176 | + if (i % n_logpix == 0 && n_logpix > 10000) { | ||
| 1177 | + #pragma omp critical(ctskymap_map_significance_ring) | ||
| 1178 | + log_value(NORMAL, "Pixels remaining", m_sigmap.npix()-i); | ||
| 1179 | + } | ||
| 926 | 1180 | ||
| 927 | - // ... otherwise store the results | ||
| 928 | - else { | 1181 | + // Compute the alpha and counts for this bin |
| 1182 | + compute_ring_values(i, m_counts, m_acceptance, n_on, n_off, alpha); | ||
| 929 | 1183 | ||
| 930 | - // Store the on-counts and alpha-weighted off-counts | ||
| 931 | - m_skymap(i,0) = n_on; | ||
| 932 | - m_bkgmap(i,0) = alpha * n_off; | 1184 | + // Store the On and alpha-weighted Off-counts |
| 1185 | + m_bkgmap(i) = alpha * n_off; | ||
| 1186 | + m_skymap(i) = n_on - m_bkgmap(i); | ||
| 933 | 1187 | ||
| 934 | - // Compute and store significance (Li & Ma eq. 17) | ||
| 935 | - if (n_on == 0.0) { | ||
| 936 | - m_sigmap(i,0) = -2.0 * n_off * std::log(1.0+alpha); | ||
| 937 | - } | ||
| 938 | - else { | ||
| 939 | - m_sigmap(i,0) = (n_on < (alpha*n_off) ? -2.0 : 2.0) * | ||
| 940 | - (n_on * std::log((1.0+alpha) * | ||
| 941 | - n_on / (alpha * (n_on+n_off))) + | ||
| 942 | - n_off * std::log((1.0+alpha) * | ||
| 943 | - n_off / (n_on+n_off))); | ||
| 944 | - } | 1188 | + // If alpha is zero then increment the bad alpha counter |
| 1189 | + if (alpha == 0.0) { | ||
| 1190 | + num_bad_alpha++; | ||
| 1191 | + #pragma omp critical(ctskymap_compute_maps_ring_direct) | ||
| 1192 | + m_sigmap(i) = 0.0; | ||
| 1193 | + } | ||
| 945 | 1194 | ||
| 946 | - } // endelse: alpha was non-zero | 1195 | + // ... otherwise store the results |
| 1196 | + else { | ||
| 947 | 1197 | ||
| 948 | - } // endfor: looped over all pixels | 1198 | + // Compute and store significance (Li & Ma eq. 17) |
| 1199 | + double sigma = sigma_li_ma(n_on, n_off, alpha); | ||
| 1200 | + #pragma omp critical(ctskymap_compute_maps_ring_direct) | ||
| 1201 | + m_sigmap(i) = sigma; | ||
| 949 | 1202 | ||
| 950 | - // Log the number of bad-alpha bins | ||
| 951 | - log_value(NORMAL, "Bins with alpha=0", num_bad_alpha); | 1203 | + } // endelse: alpha was non-zero |
| 952 | 1204 | ||
| 953 | - // Now take the square root. Since some bins can be negative, first | ||
| 954 | - // take the absolute value of the map, square root that, then multiply | ||
| 955 | - // each bin by its sign to preserve the +/- significance. | ||
| 956 | - m_sigmap = sign(m_sigmap) * sqrt(abs(m_sigmap)); | 1205 | + } // endfor: looped over all pixels |
| 957 | 1206 | ||
| 958 | - } // endif: ring background selected | 1207 | + // Log the number of bad-alpha bins |
| 1208 | + log_value(NORMAL, "Pixels with alpha=0", num_bad_alpha); | ||
| 959 | 1209 | ||
| 960 | - // Compute significance using Poisson statistics in the Gaussian limit | ||
| 961 | - else { | ||
| 962 | - m_sigmap = (m_skymap - m_bkgmap) / sqrt(m_skymap); | ||
| 963 | - } | 1210 | + // Now take the square root. Since some bins can be negative, first |
| 1211 | + // take the absolute value of the map, square root that, then multiply | ||
| 1212 | + // each bin by its sign to preserve the +/- significance. | ||
| 1213 | + m_sigmap = sign(m_sigmap) * sqrt(abs(m_sigmap)); | ||
| 964 | 1214 | ||
| 965 | // Return | 1215 | // Return |
| 966 | return; | 1216 | return; |
| @@ -970,66 +1220,107 @@ void ctskymap::map_significance(void) | @@ -970,66 +1220,107 @@ void ctskymap::map_significance(void) | ||
| 970 | /***********************************************************************//** | 1220 | /***********************************************************************//** |
| 971 | * @brief Computes Non, Noff and alpha for a counts map and sensitivity map | 1221 | * @brief Computes Non, Noff and alpha for a counts map and sensitivity map |
| 972 | * | 1222 | * |
| 973 | - * @param[in] counts Counts map | ||
| 974 | - * @param[in] sensitivity Sensitivity map | ||
| 975 | - * @param[in] position Position of the ring & roi centers | ||
| 976 | - * @param[out] non Returned estimate of ON counts | ||
| 977 | - * @param[out] noff Returned estimate of OFF counts | ||
| 978 | - * @param[out] alpha Returned estimate of alpha | 1223 | + * @param[in] ipixel Sky map pixel to consider. |
| 1224 | + * @param[in] counts Counts map. | ||
| 1225 | + * @param[in] background Background map. | ||
| 1226 | + * @param[out] non Returned estimate of On-counts. | ||
| 1227 | + * @param[out] noff Returned estimate of Off-counts. | ||
| 1228 | + * @param[out] alpha Returned estimate of alpha. | ||
| 979 | * | 1229 | * |
| 980 | - * This method computes the Non counts Noff values at a given position. It | ||
| 981 | - * also computes the alpha parameter from the passed sensitivity map. | 1230 | + * Computes the On- and Off-counts values at a given position from in counts |
| 1231 | + * map and the alpha parameter from the background map. | ||
| 1232 | + * | ||
| 1233 | + * To speed-up the computations the method considers only the pixels within | ||
| 1234 | + * a bounding box that comprises the outer background ring radius. The method | ||
| 1235 | + * considers wrapping around of pixel indices in the Right Ascension / | ||
| 1236 | + * Galactic longitude direction. | ||
| 1237 | + * | ||
| 1238 | + * If the alpha of the ring region is zero the values of @p non, @p noff, | ||
| 1239 | + * and @p alpha will be set to zero. | ||
| 982 | ***************************************************************************/ | 1240 | ***************************************************************************/ |
| 983 | -void ctskymap::compute_ring_values(const GSkyMap& counts, | ||
| 984 | - const GSkyMap& sensitivity, | ||
| 985 | - const GSkyDir& position, | 1241 | +void ctskymap::compute_ring_values(const int& ipixel, |
| 1242 | + const GSkyMap& counts, | ||
| 1243 | + const GSkyMap& background, | ||
| 986 | double& non, | 1244 | double& non, |
| 987 | double& noff, | 1245 | double& noff, |
| 988 | double& alpha) | 1246 | double& alpha) |
| 989 | { | 1247 | { |
| 990 | - // Reset Non and Noff | ||
| 991 | - non = 0.0; | ||
| 992 | - noff = 0.0; | 1248 | + // Initialise return values (non, noff and alpha) |
| 1249 | + non = 0.0; | ||
| 1250 | + noff = 0.0; | ||
| 1251 | + alpha = 0.0; | ||
| 993 | 1252 | ||
| 994 | // Initialise On and Off alpha | 1253 | // Initialise On and Off alpha |
| 995 | double alpha_on = 0.0; | 1254 | double alpha_on = 0.0; |
| 996 | double alpha_off = 0.0; | 1255 | double alpha_off = 0.0; |
| 997 | 1256 | ||
| 998 | - // Define the regions necessary to do the pixel checks | ||
| 999 | - GSkyRegionCircle roi_reg(position, m_roiradius); | ||
| 1000 | - GSkyRegionCircle inner_reg(position, m_inradius); | ||
| 1001 | - GSkyRegionCircle outer_reg(position, m_outradius); | 1257 | + // Get sky direction of pixel |
| 1258 | + GSkyDir& position = m_dirs[ipixel]; | ||
| 1002 | 1259 | ||
| 1003 | - // Loop over every pixel in the observation to compute Non, Noff | ||
| 1004 | - for (int j = 0; j < counts.npix(); ++j) { | 1260 | + // Get pixel bounding box |
| 1261 | + int ix_start; | ||
| 1262 | + int ix_stop; | ||
| 1263 | + int iy_start; | ||
| 1264 | + int iy_stop; | ||
| 1265 | + ring_bounding_box(ipixel, ix_start, ix_stop, iy_start, iy_stop); | ||
| 1005 | 1266 | ||
| 1006 | - // Get the index and sky direction of this pixel | ||
| 1007 | - GSkyDir& skydir = m_dirs[j]; | 1267 | + // Get number of x pixels in sky map |
| 1268 | + int nx = counts.nx(); | ||
| 1008 | 1269 | ||
| 1009 | - // Check if pixel is inside the background region | ||
| 1010 | - if ((m_exclmap(j,0) == 0.0) && outer_reg.contains(skydir) && | ||
| 1011 | - !inner_reg.contains(skydir)) { | 1270 | + // Loop over x pixels of bounding box |
| 1271 | + for (int ix_nowrap = ix_start; ix_nowrap < ix_stop; ++ix_nowrap) { | ||
| 1012 | 1272 | ||
| 1013 | - // Update n_off | ||
| 1014 | - noff += counts(j,0); | 1273 | + // Compute x pixel index by wrapping the pixel index into the |
| 1274 | + // interval [0,nx[ | ||
| 1275 | + int ix = ix_nowrap; | ||
| 1276 | + if (ix < 0) { | ||
| 1277 | + ix += nx; | ||
| 1278 | + } | ||
| 1279 | + else if (ix >= nx) { | ||
| 1280 | + ix -= nx; | ||
| 1281 | + } | ||
| 1015 | 1282 | ||
| 1016 | - // Update alpha_off | ||
| 1017 | - alpha_off += sensitivity(j,0); | 1283 | + // Initialise pixel index |
| 1284 | + int i = ix + iy_start * nx; | ||
| 1018 | 1285 | ||
| 1019 | - } | 1286 | + // Loop over y pixels of bounding box |
| 1287 | + for (int iy = iy_start; iy < iy_stop; ++iy, i += nx) { | ||
| 1288 | + | ||
| 1289 | + // Get the index and sky direction of this pixel | ||
| 1290 | + GSkyDir& skydir = m_dirs[i]; | ||
| 1291 | + | ||
| 1292 | + // Only consider pixels within the outer radius of the background | ||
| 1293 | + // region | ||
| 1294 | + if (position.cos_dist(skydir) >= m_cos_outradius) { | ||
| 1295 | + | ||
| 1296 | + // Check if pixel is inside the background region | ||
| 1297 | + if ((m_exclmap(i) == 0.0) && | ||
| 1298 | + (position.cos_dist(skydir) < m_cos_inradius)) { | ||
| 1299 | + | ||
| 1300 | + // Update n_off | ||
| 1301 | + noff += counts(i); | ||
| 1302 | + | ||
| 1303 | + // Update alpha_off | ||
| 1304 | + alpha_off += background(i); | ||
| 1305 | + | ||
| 1306 | + } | ||
| 1307 | + | ||
| 1308 | + // ... otherwise check if pixel is inside source region | ||
| 1309 | + else if (position.cos_dist(skydir) >= m_cos_roiradius) { | ||
| 1310 | + | ||
| 1311 | + // Update n_on | ||
| 1312 | + non += counts(i); | ||
| 1020 | 1313 | ||
| 1021 | - // ... otherwise check if pixel is inside source region | ||
| 1022 | - else if (roi_reg.contains(skydir)) { | 1314 | + // Update alpha_on |
| 1315 | + alpha_on += background(i); | ||
| 1023 | 1316 | ||
| 1024 | - // Update n_on for significance computation | ||
| 1025 | - non += counts(j,0); | 1317 | + } // endif: source and background region check |
| 1026 | 1318 | ||
| 1027 | - // Update alpha_on | ||
| 1028 | - alpha_on += sensitivity(j,0); | 1319 | + } // endif: pixel is within outer radius of background region |
| 1029 | 1320 | ||
| 1030 | - } // endif: source and background region check | 1321 | + } // endfor: looped over y pixels |
| 1031 | 1322 | ||
| 1032 | - } // endfor: looped over pixels | 1323 | + } // endfor: looped over x pixels |
| 1033 | 1324 | ||
| 1034 | // Compute alpha. If the off region does not have any sensitivity then | 1325 | // Compute alpha. If the off region does not have any sensitivity then |
| 1035 | // set Non = Noff = 0 | 1326 | // set Non = Noff = 0 |
| @@ -1048,34 +1339,100 @@ void ctskymap::compute_ring_values(const GSkyMap& counts, | @@ -1048,34 +1339,100 @@ void ctskymap::compute_ring_values(const GSkyMap& counts, | ||
| 1048 | 1339 | ||
| 1049 | 1340 | ||
| 1050 | /***********************************************************************//** | 1341 | /***********************************************************************//** |
| 1051 | - * @brief Generates map of pixel exclusions | 1342 | + * @brief Computes bounding box for RING background computation |
| 1052 | * | 1343 | * |
| 1053 | - * @param[in] filename Exclusion file name. | 1344 | + * @param[in] ipixel Sky map pixel to consider. |
| 1345 | + * @param[out] ix1 Index of first pixel in x. | ||
| 1346 | + * @param[out] ix2 Index after last pixel in x. | ||
| 1347 | + * @param[out] iy1 Index of first pixel in y. | ||
| 1348 | + * @param[out] iy2 Index after last pixel in y. | ||
| 1054 | * | 1349 | * |
| 1055 | - * Generates a sky map of the pixels that are to be excluded from the | ||
| 1056 | - * background estimation. Pixels with values different from 0 will be | ||
| 1057 | - * excluded. | 1350 | + * Computes the bounding box that contained the background ring for a |
| 1351 | + * specific pixel for the RING background method. | ||
| 1352 | + * | ||
| 1353 | + * The method determines the local pixel scale for the requested pixel and | ||
| 1354 | + * draws a bounding box with 1.5 times the outer background ring radius | ||
| 1355 | + * around the pixel. In the x direction the pixel indices are unconstrained, | ||
| 1356 | + * and the client has to assure that the pixel value is comprised within | ||
| 1357 | + * the validity range (this is required to handle the longitude wrap around). | ||
| 1358 | + * In the y direction the pixel indices are constrained to [0,ny], where | ||
| 1359 | + * ny is the number of y pixels in the sky map. | ||
| 1058 | ***************************************************************************/ | 1360 | ***************************************************************************/ |
| 1059 | -void ctskymap::map_exclusions(const GFilename& filename) | 1361 | +void ctskymap::ring_bounding_box(const int& ipixel, int& ix1, int& ix2, |
| 1362 | + int& iy1, int& iy2) const | ||
| 1060 | { | 1363 | { |
| 1061 | - // Create exlusion map | ||
| 1062 | - m_exclmap = create_map(m_obs); | 1364 | + // Get number of pixels in x and y direction |
| 1365 | + int nx = m_counts.nx(); | ||
| 1366 | + int ny = m_counts.ny(); | ||
| 1367 | + | ||
| 1368 | + // Get x and y index of pixel to consider | ||
| 1369 | + int ix0 = ipixel % nx; | ||
| 1370 | + int iy0 = ipixel / nx; | ||
| 1371 | + | ||
| 1372 | + // Get pointer on WCS projection | ||
| 1373 | + const GWcs* wcs = dynamic_cast<const GWcs*>(m_counts.projection()); | ||
| 1374 | + if (wcs == NULL) { | ||
| 1375 | + std::string msg = "Sky map is not a WCS projection. Method is only " | ||
| 1376 | + "valid for WCS projections."; | ||
| 1377 | + throw GException::invalid_value(G_RING_BOUNDING_BOX, msg); | ||
| 1378 | + } | ||
| 1063 | 1379 | ||
| 1064 | - // Set all pixels to 0 (no pixel excluded) | ||
| 1065 | - m_exclmap = 0.0; | 1380 | + // Get X and Y step size |
| 1381 | + double dx_binsz = wcs->cdelt(0); | ||
| 1382 | + double dy_binsz = wcs->cdelt(1); | ||
| 1066 | 1383 | ||
| 1067 | - // Make sure the exclusions filename is valid | ||
| 1068 | - if (is_valid_filename(filename)) { | 1384 | + // Compute pixel increment in x-direction |
| 1385 | + double dx = 0.0; | ||
| 1386 | + int ix = (ix0 > 0) ? ix0 - 1 : ix0 + 1; | ||
| 1387 | + if (ix < nx) { | ||
| 1388 | + dx = m_dirs[ipixel].dist_deg(m_dirs[ix+iy0*nx]); | ||
| 1389 | + } | ||
| 1390 | + if (dx < dx_binsz) { | ||
| 1391 | + dx = dx_binsz; | ||
| 1392 | + } | ||
| 1069 | 1393 | ||
| 1070 | - // Fill the exclusions based on the regions supplied | ||
| 1071 | - if (filename.is_fits()) { | ||
| 1072 | - map_exclusions_fits(filename); | 1394 | + // Compute pixel increment in y-direction |
| 1395 | + double dy = 0.0; | ||
| 1396 | + int iy = (iy0 > 0) ? iy0 - 1 : iy0 + 1; | ||
| 1397 | + if (iy < ny) { | ||
| 1398 | + dx = m_dirs[ipixel].dist_deg(m_dirs[ix0+iy*nx]); | ||
| 1399 | + } | ||
| 1400 | + if (dy < dy_binsz) { | ||
| 1401 | + dy = dy_binsz; | ||
| 1402 | + } | ||
| 1403 | + | ||
| 1404 | + // Compute bounding box half size in x and y. The outer radius is | ||
| 1405 | + // multiplied by 1.5 to have some margin in case of map distortions | ||
| 1406 | + int nx_bbox = int(1.5 * m_outradius / dx); | ||
| 1407 | + int ny_bbox = int(1.5 * m_outradius / dy); | ||
| 1408 | + | ||
| 1409 | + // Compute index range for x. We allow that indices are smaller than 0 | ||
| 1410 | + // or equal or larger than nx to handle wrap around, which needs to be | ||
| 1411 | + // done in the client method. | ||
| 1412 | + if (2*nx_bbox < nx) { | ||
| 1413 | + ix1 = ix0 - nx_bbox; | ||
| 1414 | + ix2 = ix0 + nx_bbox; | ||
| 1415 | + } | ||
| 1416 | + else { | ||
| 1417 | + ix1 = 0; | ||
| 1418 | + ix2 = nx; | ||
| 1419 | + } | ||
| 1420 | + | ||
| 1421 | + // Compute index range for y. The index range is restricted to [0,ny]. | ||
| 1422 | + if (2*ny_bbox < ny) { | ||
| 1423 | + iy1 = iy0 - ny_bbox; | ||
| 1424 | + iy2 = iy0 + ny_bbox; | ||
| 1425 | + if (iy1 < 0) { | ||
| 1426 | + iy1 = 0; | ||
| 1073 | } | 1427 | } |
| 1074 | - else { | ||
| 1075 | - map_exclusions_reg(filename); | 1428 | + if (iy2 > ny) { |
| 1429 | + iy2 = ny; | ||
| 1076 | } | 1430 | } |
| 1077 | - | ||
| 1078 | - } // endif: filename was valid | 1431 | + } |
| 1432 | + else { | ||
| 1433 | + iy1 = 0; | ||
| 1434 | + iy2 = ny; | ||
| 1435 | + } | ||
| 1079 | 1436 | ||
| 1080 | // Return | 1437 | // Return |
| 1081 | return; | 1438 | return; |
| @@ -1083,64 +1440,166 @@ void ctskymap::map_exclusions(const GFilename& filename) | @@ -1083,64 +1440,166 @@ void ctskymap::map_exclusions(const GFilename& filename) | ||
| 1083 | 1440 | ||
| 1084 | 1441 | ||
| 1085 | /***********************************************************************//** | 1442 | /***********************************************************************//** |
| 1086 | - * @brief Fills exclusions map from FITS image | 1443 | + * @brief Return FFT kernel for background ring |
| 1087 | * | 1444 | * |
| 1088 | - * @param[in] filename FITS image file name. | 1445 | + * @param[in] map Sky map to be convolved with a background ring. |
| 1446 | + * @param[in] rmin Minimum ring radius (degrees). | ||
| 1447 | + * @param[in] rmax Maximum ring radius (degrees). | ||
| 1448 | + * @return FFT kernel. | ||
| 1089 | * | 1449 | * |
| 1090 | - * Sets all exclusion map pixels to 1 that correspond to non-zero pixels in | ||
| 1091 | - * the exclusion sky map FITS file. | 1450 | + * Computes the FFT kernel for a backgrund ring. |
| 1092 | ***************************************************************************/ | 1451 | ***************************************************************************/ |
| 1093 | -void ctskymap::map_exclusions_fits(const GFilename& filename) | 1452 | +GSkyMap ctskymap::ring_convolve(const GSkyMap& map, const double& rmin, |
| 1453 | + const double& rmax) const | ||
| 1094 | { | 1454 | { |
| 1095 | - // Load the fits image | ||
| 1096 | - GSkyMap inmap(filename); | 1455 | + // Copy input map |
| 1456 | + GSkyMap conv_map = map; | ||
| 1097 | 1457 | ||
| 1098 | - // Loop through the individual pixels in the exclusion map | ||
| 1099 | - for (int i = 0; i < m_exclmap.npix(); ++i) { | 1458 | + // Get FFT of ring kernel |
| 1459 | + GFft fft_kernel(ring_kernel(rmin, rmax)); | ||
| 1100 | 1460 | ||
| 1101 | - // Get the pixel direction | ||
| 1102 | - GSkyDir dir = m_exclmap.pix2dir(i); | 1461 | + // Extract sky map into Ndarray |
| 1462 | + GNdarray array(conv_map.nx(), conv_map.ny()); | ||
| 1463 | + double *dst = array.data(); | ||
| 1464 | + for (int i = 0; i < conv_map.npix(); ++i) { | ||
| 1465 | + *dst++ = conv_map(i); | ||
| 1466 | + } | ||
| 1103 | 1467 | ||
| 1104 | - // Check this sky position in the fits map | ||
| 1105 | - if (inmap.contains(dir) && (inmap(inmap.dir2inx(dir)) != 0.0)) { | 1468 | + // FFT of sky map |
| 1469 | + GFft fft_array = GFft(array); | ||
| 1106 | 1470 | ||
| 1107 | - // Set the pixel to 1 | ||
| 1108 | - m_exclmap(i) = 1.0; | 1471 | + // Multiply FFT of sky map with FFT of kernel |
| 1472 | + GFft fft_smooth = fft_array * fft_kernel; | ||
| 1109 | 1473 | ||
| 1110 | - } // endif: pixel,region overlap check | 1474 | + // Backward transform sky map |
| 1475 | + GNdarray smooth = fft_smooth.backward(); | ||
| 1111 | 1476 | ||
| 1112 | - } // endfor: looped over exclusion map pixels | 1477 | + // Insert sky map |
| 1478 | + double *src = smooth.data(); | ||
| 1479 | + for (int i = 0; i < conv_map.npix(); ++i) { | ||
| 1480 | + conv_map(i) = *src++; | ||
| 1481 | + } | ||
| 1113 | 1482 | ||
| 1114 | - // Return | ||
| 1115 | - return; | 1483 | + // Return convolved map |
| 1484 | + return conv_map; | ||
| 1116 | } | 1485 | } |
| 1117 | 1486 | ||
| 1118 | 1487 | ||
| 1119 | /***********************************************************************//** | 1488 | /***********************************************************************//** |
| 1120 | - * @brief Fills exclusions map from DS9 region file | 1489 | + * @brief Return FFT kernel for background ring |
| 1121 | * | 1490 | * |
| 1122 | - * @param[in] filename DS9 region file name. | 1491 | + * @param[in] rmin Minimum ring radius (degrees). |
| 1492 | + * @param[in] rmax Maximum ring radius (degrees). | ||
| 1493 | + * @return FFT kernel. | ||
| 1123 | * | 1494 | * |
| 1124 | - * Sets all exclusion map pixels to 1 that are contained in any of the DS9 | ||
| 1125 | - * regions. | 1495 | + * @exception GException::invalid_value |
| 1496 | + * Sky map is not a WCS projection. | ||
| 1497 | + * | ||
| 1498 | + * Computes the FFT kernel for a background ring. The computation is done | ||
| 1499 | + * assuming that the sky map represents a cartesian grid, and distances are | ||
| 1500 | + * computed in that grid using Euclidean distances. The @p rmin and @p rmax | ||
| 1501 | + * arguments refer to a ring radius in these Euclidean distances. | ||
| 1126 | ***************************************************************************/ | 1502 | ***************************************************************************/ |
| 1127 | -void ctskymap::map_exclusions_reg(const GFilename& filename) | 1503 | +GNdarray ctskymap::ring_kernel(const double& rmin, const double& rmax) const |
| 1128 | { | 1504 | { |
| 1129 | - // Load the exclusion regions | ||
| 1130 | - GSkyRegions regions(filename); | 1505 | + // Get pointer on WCS projection |
| 1506 | + const GWcs* wcs = dynamic_cast<const GWcs*>(m_counts.projection()); | ||
| 1507 | + if (wcs == NULL) { | ||
| 1508 | + std::string msg = "Sky map is not a WCS projection. Method is only " | ||
| 1509 | + "valid for WCS projections."; | ||
| 1510 | + throw GException::invalid_value(G_RING_KERNEL, msg); | ||
| 1511 | + } | ||
| 1131 | 1512 | ||
| 1132 | - // Loop through the individual pixels in the exclusion map | ||
| 1133 | - for (int i = 0; i < m_exclmap.npix(); ++i) { | 1513 | + // Get X and Y step size |
| 1514 | + double dx = wcs->cdelt(0); | ||
| 1515 | + double dy = wcs->cdelt(1); | ||
| 1516 | + | ||
| 1517 | + // Initialise kernel | ||
| 1518 | + GNdarray kern(m_counts.nx(), m_counts.ny()); | ||
| 1519 | + | ||
| 1520 | + // Fill kernel | ||
| 1521 | + for (int ix1 = 0, ix2 = m_counts.nx(); ix1 < m_counts.nx(); ++ix1, --ix2) { | ||
| 1522 | + double x = ix1 * dx; | ||
| 1523 | + double xqs = x * x; | ||
| 1524 | + for (int iy1 = 0, iy2 = m_counts.ny(); iy1 < m_counts.ny(); ++iy1, --iy2) { | ||
| 1525 | + double y = iy1 * dy; | ||
| 1526 | + double r = std::sqrt(xqs + y*y); | ||
| 1527 | + if ((r >= rmin) && (r <= rmax)) { | ||
| 1528 | + kern(ix1,iy1) += 1.0; | ||
| 1529 | + if (ix2 < m_counts.nx()) { | ||
| 1530 | + kern(ix2,iy1) += 1.0; | ||
| 1531 | + } | ||
| 1532 | + if (iy2 < m_counts.ny()) { | ||
| 1533 | + kern(ix1,iy2) += 1.0; | ||
| 1534 | + } | ||
| 1535 | + if ((ix2 < m_counts.nx()) && (iy2 < m_counts.ny())) { | ||
| 1536 | + kern(ix2,iy2) += 1.0; | ||
| 1537 | + } | ||
| 1538 | + } | ||
| 1539 | + } | ||
| 1540 | + } | ||
| 1134 | 1541 | ||
| 1135 | - // Get the pixel position | ||
| 1136 | - GSkyDir dir = m_exclmap.pix2dir(i); | 1542 | + // Return kernel |
| 1543 | + return kern; | ||
| 1544 | +} | ||
| 1137 | 1545 | ||
| 1138 | - // If pixel position overlaps with the regions | ||
| 1139 | - if (regions.contains(dir)) { | ||
| 1140 | - m_exclmap(i) = 1.0; | ||
| 1141 | - } | ||
| 1142 | 1546 | ||
| 1143 | - } // endfor: looped over exclusion map pixels | 1547 | +/***********************************************************************//** |
| 1548 | + * @brief Compute significance following Li & Ma | ||
| 1549 | + * | ||
| 1550 | + * @param[in] n_on Number of On-counts. | ||
| 1551 | + * @param[in] n_off Number of Off-counts. | ||
| 1552 | + * @param[in] alpha Alpha parameters. | ||
| 1553 | + * @return Significance. | ||
| 1554 | + * | ||
| 1555 | + * Computes the significance following Li & Ma, Equation (17). | ||
| 1556 | + ***************************************************************************/ | ||
| 1557 | +double ctskymap::sigma_li_ma(const double& n_on, | ||
| 1558 | + const double& n_off, | ||
| 1559 | + const double& alpha) const | ||
| 1560 | +{ | ||
| 1561 | + // Allocate result | ||
| 1562 | + double sigma; | ||
| 1563 | + | ||
| 1564 | + // Handle special case of no On-counts | ||
| 1565 | + if (n_on == 0.0) { | ||
| 1566 | + sigma = -2.0 * n_off * std::log(1.0+alpha); | ||
| 1567 | + } | ||
| 1568 | + | ||
| 1569 | + // ... otherwise handle general case | ||
| 1570 | + else { | ||
| 1571 | + sigma = (n_on < (alpha*n_off) ? -2.0 : 2.0) * | ||
| 1572 | + (n_on * std::log((1.0+alpha) * n_on / (alpha * (n_on+n_off))) + | ||
| 1573 | + n_off * std::log((1.0+alpha) * n_off / (n_on+n_off))); | ||
| 1574 | + } | ||
| 1575 | + | ||
| 1576 | + // Return sigma | ||
| 1577 | + return sigma; | ||
| 1578 | +} | ||
| 1579 | + | ||
| 1580 | + | ||
| 1581 | +/***********************************************************************//** | ||
| 1582 | + * @brief Write sky map into FITS file | ||
| 1583 | + * | ||
| 1584 | + * @param[in,out] fits FITS file. | ||
| 1585 | + * @param[in] map Sky map. | ||
| 1586 | + * @param[in] extname Extension name. | ||
| 1587 | + * | ||
| 1588 | + * Write one sky map with the extension name and keywords into the FITS file. | ||
| 1589 | + ***************************************************************************/ | ||
| 1590 | +void ctskymap::write_map(GFits& fits, const GSkyMap& map, const std::string& extname) const | ||
| 1591 | +{ | ||
| 1592 | + // Write map into FITS file | ||
| 1593 | + GFitsHDU* hdu = map.write(fits); | ||
| 1594 | + | ||
| 1595 | + // Set map extension name | ||
| 1596 | + if (hdu != NULL) { | ||
| 1597 | + hdu->extname(extname); | ||
| 1598 | + } | ||
| 1599 | + | ||
| 1600 | + // Write keywords into map extension | ||
| 1601 | + write_ogip_keywords(hdu); | ||
| 1602 | + write_hdu_keywords(hdu); | ||
| 1144 | 1603 | ||
| 1145 | // Return | 1604 | // Return |
| 1146 | return; | 1605 | return; |
| @@ -1148,21 +1607,36 @@ void ctskymap::map_exclusions_reg(const GFilename& filename) | @@ -1148,21 +1607,36 @@ void ctskymap::map_exclusions_reg(const GFilename& filename) | ||
| 1148 | 1607 | ||
| 1149 | 1608 | ||
| 1150 | /***********************************************************************//** | 1609 | /***********************************************************************//** |
| 1151 | - * @brief Estimates the background in sky map based on IRF template | 1610 | + * @brief Write keywords in FITS HDU |
| 1152 | * | 1611 | * |
| 1153 | - * @param[in] lnE Natural logarithm of energy in MeV. | 1612 | + * @param[in,out] hdu Pointer to FITS HDU. |
| 1613 | + * | ||
| 1614 | + * Writes keywords in FITS HDU. | ||
| 1154 | ***************************************************************************/ | 1615 | ***************************************************************************/ |
| 1155 | -double ctskymap::irf_kern::eval(const double& lnE) | 1616 | +void ctskymap::write_hdu_keywords(GFitsHDU* hdu) const |
| 1156 | { | 1617 | { |
| 1157 | - // Get log10 of energy in TeV | ||
| 1158 | - double logE = lnE * gammalib::inv_ln10 - 6; | 1618 | + // Continue only if pointer is valid |
| 1619 | + if (hdu != NULL) { | ||
| 1620 | + | ||
| 1621 | + // Set keywords | ||
| 1622 | + hdu->card("BKGSUB", m_bkgsubtract, "Background substraction method"); | ||
| 1623 | + hdu->card("E_MIN", m_emin, "[TeV] Lower energy boundary"); | ||
| 1624 | + hdu->card("E_MAX", m_emax, "[TeV] Upper energy boundary"); | ||
| 1625 | + hdu->card("EUNIT", "TeV", "Units for E_MIN and E_MAX"); | ||
| 1159 | 1626 | ||
| 1160 | - // Get function value | ||
| 1161 | - double value = (*m_bgd)(logE, m_dir->detx(), m_dir->dety()); | 1627 | + // Write RING background keywords |
| 1628 | + if (m_bkgsubtract == "RING") { | ||
| 1629 | + hdu->card("USEFFT", m_usefft, "Use FFT for RING background"); | ||
| 1630 | + hdu->card("ROIRAD", m_roiradius, "[deg] Source region radius"); | ||
| 1631 | + hdu->card("INRAD", m_inradius, "[deg] Inner background ring radius"); | ||
| 1632 | + hdu->card("OUTRAD", m_outradius, "[deg] Outer background ring radius"); | ||
| 1633 | + hdu->card("ITER", m_iterations, "Exclusion map iterations"); | ||
| 1634 | + hdu->card("THRES", m_threshold, "Exclusion map threshold"); | ||
| 1635 | + hdu->card("EXCLMAP", m_inexclusion.url(), "Exclusion map name"); | ||
| 1636 | + } | ||
| 1162 | 1637 | ||
| 1163 | - // Correct for variable substitution | ||
| 1164 | - value *= std::exp(lnE); | 1638 | + } // endif: pointer was valid |
| 1165 | 1639 | ||
| 1166 | - // Return value | ||
| 1167 | - return value; | 1640 | + // Return |
| 1641 | + return; | ||
| 1168 | } | 1642 | } |
src/ctskymap/ctskymap.hpp
| 1 | /*************************************************************************** | 1 | /*************************************************************************** |
| 2 | * ctskymap - Sky mapping tool * | 2 | * ctskymap - Sky mapping tool * |
| 3 | * ----------------------------------------------------------------------- * | 3 | * ----------------------------------------------------------------------- * |
| 4 | - * copyright (C) 2010-2017 by Juergen Knoedlseder * | 4 | + * copyright (C) 2010-2018 by Juergen Knoedlseder * |
| 5 | * ----------------------------------------------------------------------- * | 5 | * ----------------------------------------------------------------------- * |
| 6 | * * | 6 | * * |
| 7 | * This program is free software: you can redistribute it and/or modify * | 7 | * This program is free software: you can redistribute it and/or modify * |
| @@ -64,59 +64,69 @@ public: | @@ -64,59 +64,69 @@ public: | ||
| 64 | 64 | ||
| 65 | protected: | 65 | protected: |
| 66 | // Protected methods | 66 | // Protected methods |
| 67 | - void init_members(void); | ||
| 68 | - void copy_members(const ctskymap& app); | ||
| 69 | - void free_members(void); | ||
| 70 | - void get_parameters(void); | ||
| 71 | - void map_events(GCTAObservation* obs); | ||
| 72 | - void map_background(GCTAObservation* obs); | ||
| 73 | - void map_background_irf(GCTAObservation* obs); | ||
| 74 | - void map_background_ring(GCTAObservation* obs); | ||
| 75 | - void map_significance(void); | ||
| 76 | - void map_exclusions(const GFilename& filename); | ||
| 77 | - void map_exclusions_fits(const GFilename& filename); | ||
| 78 | - void map_exclusions_reg(const GFilename& filename); | ||
| 79 | - void compute_ring_values(const GSkyMap& counts, | ||
| 80 | - const GSkyMap& sensitivity, | ||
| 81 | - const GSkyDir& position, | ||
| 82 | - double& non, double& noff, double& alpha); | ||
| 83 | - void write_hdu_keywords(GFitsHDU* hdu) const; | ||
| 84 | - | ||
| 85 | - // Background integration kernel | ||
| 86 | - class irf_kern : public GFunction { | ||
| 87 | - public: | ||
| 88 | - irf_kern(const GCTABackground* bgd, | ||
| 89 | - const GCTAInstDir* dir) : | ||
| 90 | - m_bgd(bgd), | ||
| 91 | - m_dir(dir) { } | ||
| 92 | - double eval(const double& lnE); | ||
| 93 | - protected: | ||
| 94 | - const GCTABackground* m_bgd; //!< Pointer to background | ||
| 95 | - const GCTAInstDir* m_dir; //!< Pointer to instrument direction | ||
| 96 | - }; | 67 | + void init_members(void); |
| 68 | + void copy_members(const ctskymap& app); | ||
| 69 | + void free_members(void); | ||
| 70 | + void get_parameters(void); | ||
| 71 | + void setup_maps(void); | ||
| 72 | + void setup_exclusion_map(const GFilename& filename); | ||
| 73 | + void setup_exclusion_map_fits(const GFilename& filename); | ||
| 74 | + void setup_exclusion_map_region(const GFilename& filename); | ||
| 75 | + void fill_maps(void); | ||
| 76 | + void fill_maps_counts(GCTAObservation* obs); | ||
| 77 | + void fill_maps_acceptance(GCTAObservation* obs); | ||
| 78 | + void compute_maps(void); | ||
| 79 | + void compute_maps_ring_fft(void); | ||
| 80 | + void compute_maps_ring_direct(void); | ||
| 81 | + void compute_ring_values(const int& ipixel, | ||
| 82 | + const GSkyMap& counts, | ||
| 83 | + const GSkyMap& background, | ||
| 84 | + double& non, | ||
| 85 | + double& noff, | ||
| 86 | + double& alpha); | ||
| 87 | + void ring_bounding_box(const int& ipixel, int& ix1, int& ix2, | ||
| 88 | + int& iy1, int& iy2) const; | ||
| 89 | + GSkyMap ring_convolve(const GSkyMap& map, const double& rmin, | ||
| 90 | + const double& rmax) const; | ||
| 91 | + GNdarray ring_kernel(const double& rmin, const double& rmax) const; | ||
| 92 | + double sigma_li_ma(const double& n_on, | ||
| 93 | + const double& n_off, | ||
| 94 | + const double& alpha) const; | ||
| 95 | + void write_map(GFits& fits, | ||
| 96 | + const GSkyMap& map, | ||
| 97 | + const std::string& extname) const; | ||
| 98 | + void write_hdu_keywords(GFitsHDU* hdu) const; | ||
| 97 | 99 | ||
| 98 | // User parameters | 100 | // User parameters |
| 99 | GFilename m_outmap; //!< Output file name | 101 | GFilename m_outmap; //!< Output file name |
| 102 | + GFilename m_inexclusion; //!< Exclusion map file name | ||
| 100 | double m_emin; //!< Minimum energy (TeV) | 103 | double m_emin; //!< Minimum energy (TeV) |
| 101 | double m_emax; //!< Maximum energy (TeV) | 104 | double m_emax; //!< Maximum energy (TeV) |
| 102 | std::string m_bkgsubtract; //!< Background subtraction method | 105 | std::string m_bkgsubtract; //!< Background subtraction method |
| 103 | double m_roiradius; //!< Region of interest radius for RING bkg. | 106 | double m_roiradius; //!< Region of interest radius for RING bkg. |
| 104 | - double m_inradius; //!< Inner ring radius for RING bkg. | ||
| 105 | - double m_outradius; //!< Outer ring radius for RING bkg. | 107 | + double m_inradius; //!< Inner ring radius for RING background |
| 108 | + double m_outradius; //!< Outer ring radius for RING background | ||
| 109 | + int m_iterations; //!< Number of iterations for RING background | ||
| 110 | + double m_threshold; //!< Threshold for RING background | ||
| 111 | + bool m_usefft; //!< Use FFT for RING background | ||
| 106 | bool m_publish; //!< Publish sky map? | 112 | bool m_publish; //!< Publish sky map? |
| 107 | GChatter m_chatter; //!< Chattiness | 113 | GChatter m_chatter; //!< Chattiness |
| 108 | 114 | ||
| 109 | // Protected members | 115 | // Protected members |
| 116 | + bool m_has_inmap; //!< Has valid input map | ||
| 110 | GSkyMap m_skymap; //!< Sky map | 117 | GSkyMap m_skymap; //!< Sky map |
| 111 | GSkyMap m_bkgmap; //!< Background map | 118 | GSkyMap m_bkgmap; //!< Background map |
| 112 | GSkyMap m_sigmap; //!< Significance map | 119 | GSkyMap m_sigmap; //!< Significance map |
| 120 | + GSkyMap m_counts; //!< Counts map | ||
| 121 | + GSkyMap m_acceptance; //!< Acceptance map | ||
| 113 | GSkyMap m_exclmap; //!< Exclusion map for RING background | 122 | GSkyMap m_exclmap; //!< Exclusion map for RING background |
| 114 | - GSkyMap m_alphamap; //!< Alpha map values for RING background | ||
| 115 | - GSkyMap m_onmap; //!< On counts map for RING background | ||
| 116 | 123 | ||
| 117 | // Caching variables to prevent multiple computations of the same thing | 124 | // Caching variables to prevent multiple computations of the same thing |
| 118 | - std::vector<double> m_solidangle; //!< Cached pixel solid angles | ||
| 119 | - std::vector<GSkyDir> m_dirs; //!< Cached pixel directions | 125 | + std::vector<double> m_solidangle; //!< Cached pixel solid angles |
| 126 | + std::vector<GSkyDir> m_dirs; //!< Cached pixel directions | ||
| 127 | + double m_cos_roiradius; //!< Cosine of RoI radius | ||
| 128 | + double m_cos_inradius; //!< Cosine of inner ring radius | ||
| 129 | + double m_cos_outradius; //!< Cosine of outer ring radius | ||
| 120 | }; | 130 | }; |
| 121 | 131 | ||
| 122 | 132 |
src/ctskymap/ctskymap.par
| @@ -19,6 +19,7 @@ | @@ -19,6 +19,7 @@ | ||
| 19 | inobs, f, a, events.fits,,, "Input event list or observation definition XML file" | 19 | inobs, f, a, events.fits,,, "Input event list or observation definition XML file" |
| 20 | caldb, s, a, prod2,,, "Calibration database" | 20 | caldb, s, a, prod2,,, "Calibration database" |
| 21 | irf, s, a, South_0.5h,,, "Instrument response function" | 21 | irf, s, a, South_0.5h,,, "Instrument response function" |
| 22 | +inmap, f, h, NONE,,, "Input skymap file" | ||
| 22 | outmap, f, a, skymap.fits,,, "Output skymap file" | 23 | outmap, f, a, skymap.fits,,, "Output skymap file" |
| 23 | 24 | ||
| 24 | # | 25 | # |
| @@ -43,10 +44,13 @@ yref, r, a, 22.01,-90,90, "Second coordinate of image center in degrees (DEC | @@ -43,10 +44,13 @@ yref, r, a, 22.01,-90,90, "Second coordinate of image center in degrees (DEC | ||
| 43 | # Background subtraction parameters | 44 | # Background subtraction parameters |
| 44 | #================================== | 45 | #================================== |
| 45 | bkgsubtract, s, a, NONE, NONE|IRF|RING,, "Background subtraction method" | 46 | bkgsubtract, s, a, NONE, NONE|IRF|RING,, "Background subtraction method" |
| 46 | -roiradius, r, a, 0.2,,, "Source region radius for estimating on-counts (degrees)" | ||
| 47 | -inradius, r, a, 0.6,,, "Inner ring radius (degrees)" | ||
| 48 | -outradius, r, a, 0.8,,, "Outer ring radius (degrees)" | 47 | +roiradius, r, a, 0.1,,, "Source region radius for estimating on-counts (degrees)" |
| 48 | +inradius, r, a, 0.6,,, "Inner background ring radius (degrees)" | ||
| 49 | +outradius, r, a, 0.8,,, "Outer background ring radius (degrees)" | ||
| 50 | +iterations, i, a, 0,0,100, "Number of iterations for exclusion regions computation" | ||
| 51 | +threshold, r, a, 5.0,,, "Significance threshold for exclusion regions computation" | ||
| 49 | inexclusion, f, h, NONE,,, "Exclusion map or DS9 region file name" | 52 | inexclusion, f, h, NONE,,, "Exclusion map or DS9 region file name" |
| 53 | +usefft, b, h, yes,,, "Use FFT for ring computation?" | ||
| 50 | 54 | ||
| 51 | # | 55 | # |
| 52 | # Standard parameters | 56 | # Standard parameters |
src/support/ctobservation.cpp
| @@ -319,6 +319,48 @@ const GCTAObservation* ctobservation::next_unbinned_observation(void) const | @@ -319,6 +319,48 @@ const GCTAObservation* ctobservation::next_unbinned_observation(void) const | ||
| 319 | 319 | ||
| 320 | 320 | ||
| 321 | /***********************************************************************//** | 321 | /***********************************************************************//** |
| 322 | + * @brief Read OGIP keywords from FITS HDU | ||
| 323 | + * | ||
| 324 | + * @param[in,out] hdu Pointer to FITS HDU. | ||
| 325 | + * | ||
| 326 | + * Read OGIP keywords from FITS HDU. | ||
| 327 | + ***************************************************************************/ | ||
| 328 | +void ctobservation::read_ogip_keywords(GFitsHDU* hdu) const | ||
| 329 | +{ | ||
| 330 | + // Continue only if pointer is valid | ||
| 331 | + if (hdu != NULL) { | ||
| 332 | + | ||
| 333 | + // Get observation information | ||
| 334 | + m_ogip_telescope = (hdu->has_card("TELESCOP")) ? hdu->string("TELESCOP") : ""; | ||
| 335 | + | ||
| 336 | + // Get observation time information | ||
| 337 | + std::string date_obs = (hdu->has_card("DATE-OBS")) ? hdu->string("DATE-OBS") : ""; | ||
| 338 | + std::string time_obs = (hdu->has_card("TIME-OBS")) ? hdu->string("TIME-OBS") : ""; | ||
| 339 | + std::string date_end = (hdu->has_card("DATE-END")) ? hdu->string("DATE-END") : ""; | ||
| 340 | + std::string time_end = (hdu->has_card("TIME-END")) ? hdu->string("TIME-END") : ""; | ||
| 341 | + m_ogip_telapse = (hdu->has_card("TELAPSE")) ? hdu->real("TELAPSE") : 0.0; | ||
| 342 | + m_ogip_ontime = (hdu->has_card("ONTIME")) ? hdu->real("ONTIME") : 0.0; | ||
| 343 | + m_ogip_livetime = (hdu->has_card("LIVETIME")) ? hdu->real("LIVETIME") : 0.0; | ||
| 344 | + m_ogip_exposure = (hdu->has_card("EXPOSURE")) ? hdu->real("EXPOSURE") : 0.0; | ||
| 345 | + | ||
| 346 | + // Get OGIP start and stop time | ||
| 347 | + std::string tstart = date_obs + "T" + time_obs; | ||
| 348 | + std::string tstop = date_end + "T" + time_end; | ||
| 349 | + if (tstart != "T") { | ||
| 350 | + m_ogip_tstart.utc(tstart); | ||
| 351 | + } | ||
| 352 | + if (tstop != "T") { | ||
| 353 | + m_ogip_tstop.utc(tstop); | ||
| 354 | + } | ||
| 355 | + | ||
| 356 | + } // endif: pointer was valid | ||
| 357 | + | ||
| 358 | + // Return | ||
| 359 | + return; | ||
| 360 | +} | ||
| 361 | + | ||
| 362 | + | ||
| 363 | +/***********************************************************************//** | ||
| 322 | * @brief Write OGIP keywords in FITS HDU | 364 | * @brief Write OGIP keywords in FITS HDU |
| 323 | * | 365 | * |
| 324 | * @param[in,out] hdu Pointer to FITS HDU. | 366 | * @param[in,out] hdu Pointer to FITS HDU. |
src/support/ctobservation.hpp
| 1 | /*************************************************************************** | 1 | /*************************************************************************** |
| 2 | * ctobservation - Base class for observation tools * | 2 | * ctobservation - Base class for observation tools * |
| 3 | * ----------------------------------------------------------------------- * | 3 | * ----------------------------------------------------------------------- * |
| 4 | - * copyright (C) 2016-2017 by Juergen Knoedlseder * | 4 | + * copyright (C) 2016-2018 by Juergen Knoedlseder * |
| 5 | * ----------------------------------------------------------------------- * | 5 | * ----------------------------------------------------------------------- * |
| 6 | * * | 6 | * * |
| 7 | * This program is free software: you can redistribute it and/or modify * | 7 | * This program is free software: you can redistribute it and/or modify * |
| @@ -73,6 +73,7 @@ protected: | @@ -73,6 +73,7 @@ protected: | ||
| 73 | GCTAObservation* next_unbinned_observation(void); | 73 | GCTAObservation* next_unbinned_observation(void); |
| 74 | const GCTAObservation* first_unbinned_observation(void) const; | 74 | const GCTAObservation* first_unbinned_observation(void) const; |
| 75 | const GCTAObservation* next_unbinned_observation(void) const; | 75 | const GCTAObservation* next_unbinned_observation(void) const; |
| 76 | + void read_ogip_keywords(GFitsHDU* hdu) const; | ||
| 76 | void write_ogip_keywords(GFitsHDU* hdu) const; | 77 | void write_ogip_keywords(GFitsHDU* hdu) const; |
| 77 | void set_obs_statistic(const std::string& statistic); | 78 | void set_obs_statistic(const std::string& statistic); |
| 78 | void save_events_fits(void); | 79 | void save_events_fits(void); |
src/support/ctool.cpp
| @@ -650,7 +650,11 @@ GEbounds ctool::create_ebounds(void) | @@ -650,7 +650,11 @@ GEbounds ctool::create_ebounds(void) | ||
| 650 | ***************************************************************************/ | 650 | ***************************************************************************/ |
| 651 | GSkyMap ctool::create_map(const GObservations& obs) | 651 | GSkyMap ctool::create_map(const GObservations& obs) |
| 652 | { | 652 | { |
| 653 | - // Read task parameters | 653 | + // Read coordinate system and projection |
| 654 | + std::string coordsys = (*this)["coordsys"].string(); | ||
| 655 | + std::string proj = (*this)["proj"].string(); | ||
| 656 | + | ||
| 657 | + // Read sky map reference | ||
| 654 | double xref = 0.0; | 658 | double xref = 0.0; |
| 655 | double yref = 0.0; | 659 | double yref = 0.0; |
| 656 | bool usepnt = (*this)["usepnt"].boolean(); | 660 | bool usepnt = (*this)["usepnt"].boolean(); |
| @@ -658,11 +662,11 @@ GSkyMap ctool::create_map(const GObservations& obs) | @@ -658,11 +662,11 @@ GSkyMap ctool::create_map(const GObservations& obs) | ||
| 658 | xref = (*this)["xref"].real(); | 662 | xref = (*this)["xref"].real(); |
| 659 | yref = (*this)["yref"].real(); | 663 | yref = (*this)["yref"].real(); |
| 660 | } | 664 | } |
| 661 | - std::string proj = (*this)["proj"].string(); | ||
| 662 | - std::string coordsys = (*this)["coordsys"].string(); | ||
| 663 | - double binsz = (*this)["binsz"].real(); | ||
| 664 | - int nxpix = (*this)["nxpix"].integer(); | ||
| 665 | - int nypix = (*this)["nypix"].integer(); | 665 | + |
| 666 | + // Read sky map pixel size and number of bins | ||
| 667 | + double binsz = (*this)["binsz"].real(); | ||
| 668 | + int nxpix = (*this)["nxpix"].integer(); | ||
| 669 | + int nypix = (*this)["nypix"].integer(); | ||
| 666 | 670 | ||
| 667 | // If requested, get pointing from observations | 671 | // If requested, get pointing from observations |
| 668 | if (usepnt) { | 672 | if (usepnt) { |
test/data/irf_file.fits.gz
No preview for this file type
test/test_csobsinfo.py
| @@ -112,7 +112,7 @@ class Test(test): | @@ -112,7 +112,7 @@ class Test(test): | ||
| 112 | obsinfo['ra'] = 83.63 | 112 | obsinfo['ra'] = 83.63 |
| 113 | obsinfo['dec'] = 22.01 | 113 | obsinfo['dec'] = 22.01 |
| 114 | obsinfo['logfile'] = 'csobsinfo_py1.log' | 114 | obsinfo['logfile'] = 'csobsinfo_py1.log' |
| 115 | - obsinfo['chatter'] = 2 | 115 | + obsinfo['chatter'] = 3 |
| 116 | 116 | ||
| 117 | # Run csobsinfo script and save XML file | 117 | # Run csobsinfo script and save XML file |
| 118 | obsinfo.logFileOpen() # Make sure we get a log file | 118 | obsinfo.logFileOpen() # Make sure we get a log file |
| @@ -122,21 +122,20 @@ class Test(test): | @@ -122,21 +122,20 @@ class Test(test): | ||
| 122 | # Check DS9 file | 122 | # Check DS9 file |
| 123 | self._check_ds9_file('csobsinfo_py1.reg') | 123 | self._check_ds9_file('csobsinfo_py1.reg') |
| 124 | 124 | ||
| 125 | - # Set-up csobsinfo | ||
| 126 | - obsinfo = cscripts.csobsinfo() | ||
| 127 | - obsinfo['inobs'] = self._inobs | ||
| 128 | - obsinfo['outds9file'] = 'csobsinfo_py2.reg' | ||
| 129 | - obsinfo['offset'] = True | ||
| 130 | - obsinfo['ra'] = 83.63 | ||
| 131 | - obsinfo['dec'] = 22.01 | ||
| 132 | - obsinfo['logfile'] = 'csobsinfo_py2.log' | ||
| 133 | - obsinfo['chatter'] = 3 | ||
| 134 | - | ||
| 135 | - # Execute csobsinfo script | ||
| 136 | - obsinfo.execute() | ||
| 137 | - | ||
| 138 | - # Check DS9 file | ||
| 139 | - self._check_ds9_file('csobsinfo_py2.reg') | 125 | + # Check result access methods |
| 126 | + self.test_value(len(obsinfo.zeniths()), 1, 'Test number of zenith angles') | ||
| 127 | + self.test_value(obsinfo.zeniths()[0], 0.0, 'Test zenith angle') | ||
| 128 | + self.test_value(len(obsinfo.azimuths()), 1, 'Test number of azimuth angles') | ||
| 129 | + self.test_value(obsinfo.azimuths()[0], 0.0, 'Test azimuth angle') | ||
| 130 | + self.test_value(len(obsinfo.ras()), 1, 'Test number of Right Ascensions') | ||
| 131 | + self.test_value(obsinfo.ras()[0], 83.63, 'Test Right Ascension') | ||
| 132 | + self.test_value(len(obsinfo.decs()), 1, 'Test number of Declinations') | ||
| 133 | + self.test_value(obsinfo.decs()[0], 22.51, 'Test Declination') | ||
| 134 | + self.test_value(len(obsinfo.offsets()), 1, 'Test number of offsets') | ||
| 135 | + self.test_value(obsinfo.offsets()[0], 0.5, 'Test offset angle') | ||
| 136 | + self.test_value(obsinfo.ebounds().size(), 1, 'Test number of energy boundaries') | ||
| 137 | + self.test_value(obsinfo.ebounds().emin().GeV(), 100.0, 'Test minimum energy') | ||
| 138 | + self.test_value(obsinfo.ebounds().emax().TeV(), 100.0, 'Test maximum energy') | ||
| 140 | 139 | ||
| 141 | # Return | 140 | # Return |
| 142 | return | 141 | return |
| @@ -151,13 +150,12 @@ class Test(test): | @@ -151,13 +150,12 @@ class Test(test): | ||
| 151 | 150 | ||
| 152 | # Expect "fk5" in first line | 151 | # Expect "fk5" in first line |
| 153 | line = f.readline().strip('\n') | 152 | line = f.readline().strip('\n') |
| 154 | - self.test_assert(line == 'fk5', | ||
| 155 | - 'Check for "fk5" in first line') | 153 | + self.test_value(line, 'fk5', |
| 154 | + 'Test for "fk5" in first line of DS9 file') | ||
| 156 | 155 | ||
| 157 | # Expect "fk5" in first line | 156 | # Expect "fk5" in first line |
| 158 | line = f.readline().strip('\n') | 157 | line = f.readline().strip('\n') |
| 159 | - self.test_assert(line[0:6] == 'point(', | ||
| 160 | - 'Check for "point(" in second line') | 158 | + self.test_value(line[0:6], 'point(', 'Test for "point(" in second line of DS9 file') |
| 161 | 159 | ||
| 162 | # Close file | 160 | # Close file |
| 163 | f.close() | 161 | f.close() |
test/test_ctskymap.py
| @@ -248,6 +248,7 @@ class Test(test): | @@ -248,6 +248,7 @@ class Test(test): | ||
| 248 | skymap['roiradius'] = 0.1 | 248 | skymap['roiradius'] = 0.1 |
| 249 | skymap['inradius'] = 0.6 | 249 | skymap['inradius'] = 0.6 |
| 250 | skymap['outradius'] = 0.8 | 250 | skymap['outradius'] = 0.8 |
| 251 | + skymap['iterations'] = 0 | ||
| 251 | skymap['inexclusion'] = 'NONE' | 252 | skymap['inexclusion'] = 'NONE' |
| 252 | skymap['caldb'] = self._caldb | 253 | skymap['caldb'] = self._caldb |
| 253 | skymap['irf'] = self._irf | 254 | skymap['irf'] = self._irf |
test/test_obsutils.py
| @@ -2,7 +2,7 @@ | @@ -2,7 +2,7 @@ | ||
| 2 | # ========================================================================== | 2 | # ========================================================================== |
| 3 | # This scripts performs unit tests for the obsutils module | 3 | # This scripts performs unit tests for the obsutils module |
| 4 | # | 4 | # |
| 5 | -# Copyright (C) 2017 Juergen Knoedlseder | 5 | +# Copyright (C) 2017-2018 Juergen Knoedlseder |
| 6 | # | 6 | # |
| 7 | # This program is free software: you can redistribute it and/or modify | 7 | # This program is free software: you can redistribute it and/or modify |
| 8 | # it under the terms of the GNU General Public License as published by | 8 | # it under the terms of the GNU General Public License as published by |
| @@ -214,7 +214,7 @@ class Test(test): | @@ -214,7 +214,7 @@ class Test(test): | ||
| 214 | # Check simulation results | 214 | # Check simulation results |
| 215 | self.test_value(res.size(), 1, 'Check number of observations') | 215 | self.test_value(res.size(), 1, 'Check number of observations') |
| 216 | self.test_value(res.models().size(), 2, 'Check number of models') | 216 | self.test_value(res.models().size(), 2, 'Check number of models') |
| 217 | - self.test_value(res.nobserved(), 24, 'Check number of observed events') | 217 | + self.test_value(res.nobserved(), 23, 'Check number of observed events') |
| 218 | self.test_value(res.npred(), 0.0, 'Check number of predicted events') | 218 | self.test_value(res.npred(), 0.0, 'Check number of predicted events') |
| 219 | self.test_value(res[0].eventtype(), 'CountsCube', 'Check event type') | 219 | self.test_value(res[0].eventtype(), 'CountsCube', 'Check event type') |
| 220 | self.test_value(res[0].events().ebounds().emin().TeV(), 1.0, | 220 | self.test_value(res[0].events().ebounds().emin().TeV(), 1.0, |
| @@ -223,7 +223,7 @@ class Test(test): | @@ -223,7 +223,7 @@ class Test(test): | ||
| 223 | 'Check minimum energy') | 223 | 'Check minimum energy') |
| 224 | self.test_value(res[0].events().ebounds().size(), 5, | 224 | self.test_value(res[0].events().ebounds().size(), 5, |
| 225 | 'Check number of energy bins') | 225 | 'Check number of energy bins') |
| 226 | - self.test_value(res[0].events().number(), 24, | 226 | + self.test_value(res[0].events().number(), 23, |
| 227 | 'Check number of events in cube') | 227 | 'Check number of events in cube') |
| 228 | 228 | ||
| 229 | # Check energy dispersion flag | 229 | # Check energy dispersion flag |