GModelSpectralPlawPhotonFlux.cpp
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/***************************************************************************
* GModelSpectralPlawPhotonFlux.cpp - Spectral power law model class *
* ----------------------------------------------------------------------- *
* copyright (C) 2010-2016 by Juergen Knoedlseder *
* ----------------------------------------------------------------------- *
* *
* This program is free software: you can redistribute it and/or modify *
* it under the terms of the GNU General Public License as published by *
* the Free Software Foundation, either version 3 of the License, or *
* (at your option) any later version. *
* *
* This program is distributed in the hope that it will be useful, *
* but WITHOUT ANY WARRANTY; without even the implied warranty of *
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the *
* GNU General Public License for more details. *
* *
* You should have received a copy of the GNU General Public License *
* along with this program. If not, see <http://www.gnu.org/licenses/>. *
* *
***************************************************************************/
/**
* @file GModelSpectralPlawPhotonFlux.cpp
* @brief Flux normalized power law spectral model class implementation
* @author Juergen Knoedlseder
*/
/* __ Includes ___________________________________________________________ */
#ifdef HAVE_CONFIG_H
#include <config.h>
#endif
#include <cmath>
#include "GException.hpp"
#include "GTools.hpp"
#include "GMath.hpp"
#include "GRan.hpp"
#include "GModelSpectralPlawPhotonFlux.hpp"
#include "GModelSpectralRegistry.hpp"
/* __ Constants __________________________________________________________ */
/* __ Globals ____________________________________________________________ */
const GModelSpectralPlawPhotonFlux g_spectral_plaw_phflux_seed1("PowerLaw",
"PhotonFlux",
"Index",
"LowerLimit",
"UpperLimit");
const GModelSpectralRegistry g_spectral_plaw_phflux_registry1(&g_spectral_plaw_phflux_seed1);
#if defined(G_LEGACY_XML_FORMAT)
const GModelSpectralPlawPhotonFlux g_spectral_plaw_phflux_seed2("PowerLaw2",
"Integral",
"Index",
"LowerLimit",
"UpperLimit");
const GModelSpectralRegistry g_spectral_plaw_phflux_registry2(&g_spectral_plaw_phflux_seed2);
#endif
/* __ Method name definitions ____________________________________________ */
#define G_FLUX "GModelSpectralPlawPhotonFlux::flux(GEnergy&, GEnergy&)"
#define G_EFLUX "GModelSpectralPlawPhotonFlux::eflux(GEnergy&, GEnergy&)"
#define G_MC "GModelSpectralPlawPhotonFlux::mc(GEnergy&, GEnergy&, GTime&, "\
"GRan&)"
#define G_READ "GModelSpectralPlawPhotonFlux::read(GXmlElement&)"
#define G_WRITE "GModelSpectralPlawPhotonFlux::write(GXmlElement&)"
/* __ Macros _____________________________________________________________ */
/* __ Coding definitions _________________________________________________ */
/* __ Debug definitions __________________________________________________ */
/*==========================================================================
= =
= Constructors/destructors =
= =
==========================================================================*/
/***********************************************************************//**
* @brief Void constructor
*
* Constructs empty power law photon flux model.
***************************************************************************/
GModelSpectralPlawPhotonFlux::GModelSpectralPlawPhotonFlux(void) :
GModelSpectral()
{
// Initialise members
init_members();
// Return
return;
}
/***********************************************************************//**
* @brief Model type and parameter name constructor
*
* @param[in] type Model type.
* @param[in] flux Name of photon flux parameter.
* @param[in] index Name of index parameter.
* @param[in] emin Name of emin parameter.
* @param[in] emax Name of emax parameter.
***************************************************************************/
GModelSpectralPlawPhotonFlux::GModelSpectralPlawPhotonFlux(const std::string& type,
const std::string& flux,
const std::string& index,
const std::string& emin,
const std::string& emax) :
GModelSpectral()
{
// Initialise members
init_members();
// Set model type
m_type = type;
// Set parameter names
m_flux.name(flux);
m_index.name(index);
m_emin.name(emin);
m_emax.name(emax);
// Return
return;
}
/***********************************************************************//**
* @brief Constructor
*
* @param[in] flux Photon flux (ph/cm2/s).
* @param[in] index Power law index.
* @param[in] emin Minimum energy.
* @param[in] emax Maximum energy.
*
* Construct a spectral power law from the
* - integral photon flux (in ph/cm2/s),
* - spectral index,
* - minimum energy and
* - maximum energy.
***************************************************************************/
GModelSpectralPlawPhotonFlux::GModelSpectralPlawPhotonFlux(const double& flux,
const double& index,
const GEnergy& emin,
const GEnergy& emax) :
GModelSpectral()
{
// Initialise members
init_members();
// Set parameters
m_flux.value(flux);
m_index.value(index);
m_emin.value(emin.MeV());
m_emax.value(emax.MeV());
// Return
return;
}
/***********************************************************************//**
* @brief XML constructor
*
* @param[in] xml XML element.
*
* Constructs flux normalized power law spectral model by extracting
* information from an XML element.
***************************************************************************/
GModelSpectralPlawPhotonFlux::GModelSpectralPlawPhotonFlux(const GXmlElement& xml) :
GModelSpectral()
{
// Initialise members
init_members();
// Read information from XML element
read(xml);
// Return
return;
}
/***********************************************************************//**
* @brief Copy constructor
*
* @param[in] model Spectral power law model.
***************************************************************************/
GModelSpectralPlawPhotonFlux::GModelSpectralPlawPhotonFlux(const GModelSpectralPlawPhotonFlux& model) :
GModelSpectral(model)
{
// Initialise members
init_members();
// Copy members
copy_members(model);
// Return
return;
}
/***********************************************************************//**
* @brief Destructor
***************************************************************************/
GModelSpectralPlawPhotonFlux::~GModelSpectralPlawPhotonFlux(void)
{
// Free members
free_members();
// Return
return;
}
/*==========================================================================
= =
= Operators =
= =
==========================================================================*/
/***********************************************************************//**
* @brief Assignment operator
*
* @param[in] model Spectral power law model.
* @return Spectral power law model.
***************************************************************************/
GModelSpectralPlawPhotonFlux& GModelSpectralPlawPhotonFlux::operator=(const GModelSpectralPlawPhotonFlux& model)
{
// Execute only if object is not identical
if (this != &model) {
// Copy base class members
this->GModelSpectral::operator=(model);
// Free members
free_members();
// Initialise members
init_members();
// Copy members
copy_members(model);
} // endif: object was not identical
// Return
return *this;
}
/*==========================================================================
= =
= Public methods =
= =
==========================================================================*/
/***********************************************************************//**
* @brief Clear power law model
***************************************************************************/
void GModelSpectralPlawPhotonFlux::clear(void)
{
// Free class members (base and derived classes, derived class first)
free_members();
this->GModelSpectral::free_members();
// Initialise members
this->GModelSpectral::init_members();
init_members();
// Return
return;
}
/***********************************************************************//**
* @brief Clone power law model
*
* @return Pointer to deep copy of power law model
***************************************************************************/
GModelSpectralPlawPhotonFlux* GModelSpectralPlawPhotonFlux::clone(void) const
{
// Clone power law model
return new GModelSpectralPlawPhotonFlux(*this);
}
/***********************************************************************//**
* @brief Evaluate function
*
* @param[in] srcEng True photon energy.
* @param[in] srcTime True photon arrival time.
* @param[in] gradients Compute gradients?
* @return Model value (ph/cm2/s/MeV).
*
* Computes
*
* \f[
* S_{\rm E}(E | t) = {\tt m\_flux}
* \frac{{\tt m\_index}+1}
* {{\tt e\_max}^{{\tt m\_index}+1} -
* {\tt e\_min}^{{\tt m\_index}+1}}
* E^{\tt m\_index}
* \f]
*
* for \f${\tt m\_index} \ne -1\f$ and
*
* \f[
* S_{\rm E}(E | t) =
* \frac{{\tt m\_flux}}
* {\log {\tt e\_max} - \log {\tt e\_min}}
* E^{\tt m\_index}
* \f]
*
* for \f${\tt m\_index} = -1\f$, where
* - \f${\tt e\_min}\f$ is the minimum energy of an interval,
* - \f${\tt e\_max}\f$ is the maximum energy of an interval,
* - \f${\tt m\_flux}\f$ is the photon flux between
* \f${\tt e\_min}\f$ and \f${\tt e\_max}\f$, and
* - \f${\tt m\_index}\f$ is the spectral index.
*
* If the @p gradients flag is true the method will also compute the
* partial derivatives of the model with respect to the parameters using
*
* \f[
* \frac{\delta S_{\rm E}(E | t)}{\delta {\tt m\_flux}} =
* \frac{S_{\rm E}(E | t)}{{\tt m\_flux}}
* \f]
*
* \f[
* \frac{\delta S_{\rm E}(E | t)}{\delta {\tt m\_index}} =
* S_{\rm E}(E | t) \,
* \left( \frac{1}{{\tt m\_index}+1} -
* \frac{\log({\tt e\_max}) {\tt e\_max}^{{\tt m\_index}+1} -
* \log({\tt e\_min}) {\tt e\_min}^{{\tt m\_index}+1}}
* {{\tt e\_max}^{{\tt m\_index}+1} -
* {\tt e\_min}^{{\tt m\_index}+1}}
* + \ln(E) \right)
* \f]
*
* for \f${\tt m\_index} \ne -1\f$ and
*
* \f[
* \frac{\delta S_{\rm E}(E | t)}{\delta {\tt m\_index}} =
* S_{\rm E}(E | t) \, \ln(E)
* \f]
*
* for \f${\tt m\_index} = -1\f$.
***************************************************************************/
double GModelSpectralPlawPhotonFlux::eval(const GEnergy& srcEng,
const GTime& srcTime,
const bool& gradients) const
{
// Update precomputed values
update(srcEng);
// Compute function value
double value = m_flux.value() * m_norm * m_power;
// Optionally compute gradients
if (gradients) {
// Compute partial derivatives of the parameter values
double g_flux = (m_flux.is_free() && m_flux.factor_value() > 0.0)
? value / m_flux.factor_value()
: 0.0;
double g_index = (m_index.is_free())
? value * (m_g_norm + gammalib::ln10 *
srcEng.log10MeV()) * m_index.scale() : 0.0;
// Set gradients
m_flux.factor_gradient(g_flux);
m_index.factor_gradient(g_index);
} // endif: gradient computation was requested
// Compile option: Check for NaN/Inf
#if defined(G_NAN_CHECK)
if (gammalib::is_notanumber(value) || gammalib::is_infinite(value)) {
std::cout << "*** ERROR: GModelSpectralPlawPhotonFlux::eval";
std::cout << "(srcEng=" << srcEng;
std::cout << ", srcTime=" << srcTime << "):";
std::cout << " NaN/Inf encountered";
std::cout << " (value=" << value;
std::cout << ", flux=" << flux();
std::cout << ", m_norm=" << m_norm;
std::cout << ", m_power=" << m_power;
std::cout << ")" << std::endl;
}
#endif
// Return
return value;
}
/***********************************************************************//**
* @brief Returns model photon flux between [emin, emax] (units: ph/cm2/s)
*
* @param[in] emin Minimum photon energy.
* @param[in] emax Minimum photon energy.
* @return Photon flux (ph/cm2/s).
*
* Computes
*
* \f[
* \int_{\tt emin}^{\tt emax} S_{\rm E}(E | t) dE
* \f]
*
* where
* - [@p emin, @p emax] is an energy interval, and
* - \f$S_{\rm E}(E | t)\f$ is the spectral model (ph/cm2/s/MeV).
***************************************************************************/
double GModelSpectralPlawPhotonFlux::flux(const GEnergy& emin,
const GEnergy& emax) const
{
// Initialise flux
double flux = 0.0;
// Compute only if integration range is valid
if (emin < emax) {
// Case A: Index is not -1
if (index() != -1.0) {
double gamma = m_index.value() + 1.0;
double pow_emin = std::pow(emin.MeV(), gamma);
double pow_emax = std::pow(emax.MeV(), gamma);
double pow_ref_emin = std::pow(this->emin().MeV(), gamma);
double pow_ref_emax = std::pow(this->emax().MeV(), gamma);
double factor = (pow_emax - pow_emin) /
(pow_ref_emax - pow_ref_emin);
flux = m_flux.value() * factor;
}
// Case B: Index is -1
else {
double log_emin = std::log(emin.MeV());
double log_emax = std::log(emax.MeV());
double log_ref_emin = std::log(this->emin().MeV());
double log_ref_emax = std::log(this->emax().MeV());
double factor = (log_emax - log_emin) /
(log_ref_emax - log_ref_emin);
flux = m_flux.value() * factor;
}
} // endif: integration range was valid
// Return flux
return flux;
}
/***********************************************************************//**
* @brief Returns model energy flux between [emin, emax] (units: erg/cm2/s)
*
* @param[in] emin Minimum photon energy.
* @param[in] emax Minimum photon energy.
* @return Energy flux (erg/cm2/s).
*
* Computes
*
* \f[
* \int_{\tt emin}^{\tt emax} S_{\rm E}(E | t) E \, dE
* \f]
*
* where
* - [@p emin, @p emax] is an energy interval, and
* - \f$S_{\rm E}(E | t)\f$ is the spectral model (ph/cm2/s/MeV).
***************************************************************************/
double GModelSpectralPlawPhotonFlux::eflux(const GEnergy& emin,
const GEnergy& emax) const
{
// Initialise flux
double eflux = 0.0;
// Compute only if integration range is valid
if (emin < emax) {
// Compute power law normalization
double norm;
if (index() != -1.0) {
double gamma = m_index.value() + 1.0;
double pow_ref_emin = std::pow(this->emin().MeV(), gamma);
double pow_ref_emax = std::pow(this->emax().MeV(), gamma);
norm = m_flux.value() * gamma / (pow_ref_emax - pow_ref_emin);
}
else {
double log_ref_emin = std::log(this->emin().MeV());
double log_ref_emax = std::log(this->emax().MeV());
norm = m_flux.value() / (log_ref_emax - log_ref_emin);
}
// Compute energy flux
if (index() != -2.0) {
double gamma = m_index.value() + 2.0;
double pow_emin = std::pow(emin.MeV(), gamma);
double pow_emax = std::pow(emax.MeV(), gamma);
eflux = norm / gamma * (pow_emax - pow_emin);
}
// Case B: Index is -2
else {
double log_emin = std::log(emin.MeV());
double log_emax = std::log(emax.MeV());
eflux = norm * (log_emax - log_emin);
}
// Convert from MeV/cm2/s to erg/cm2/s
eflux *= gammalib::MeV2erg;
} // endif: integration range was valid
// Return flux
return eflux;
}
/***********************************************************************//**
* @brief Returns MC energy between [emin, emax]
*
* @param[in] emin Minimum photon energy.
* @param[in] emax Maximum photon energy.
* @param[in] time True photon arrival time.
* @param[in,out] ran Random number generator.
* @return Energy.
*
* @exception GException::erange_invalid
* Energy range is invalid (emin < emax required).
*
* Returns Monte Carlo energy by randomly drawing from a power law.
***************************************************************************/
GEnergy GModelSpectralPlawPhotonFlux::mc(const GEnergy& emin,
const GEnergy& emax,
const GTime& time,
GRan& ran) const
{
// Throw an exception if energy range is invalid
if (emin >= emax) {
throw GException::erange_invalid(G_MC, emin.MeV(), emax.MeV(),
"Minimum energy < maximum energy required.");
}
// Allocate energy
GEnergy energy;
// Case A: Index is not -1
if (index() != -1.0) {
double exponent = index() + 1.0;
double e_max = std::pow(emax.MeV(), exponent);
double e_min = std::pow(emin.MeV(), exponent);
double u = ran.uniform();
double eng = (u > 0.0)
? std::exp(std::log(u * (e_max - e_min) + e_min) / exponent)
: 0.0;
energy.MeV(eng);
}
// Case B: Index is -1
else {
double e_max = std::log(emax.MeV());
double e_min = std::log(emin.MeV());
double u = ran.uniform();
double eng = std::exp(u * (e_max - e_min) + e_min);
energy.MeV(eng);
}
// Return energy
return energy;
}
/***********************************************************************//**
* @brief Read model from XML element
*
* @param[in] xml XML element.
*
* Reads the spectral information from an XML element.
***************************************************************************/
void GModelSpectralPlawPhotonFlux::read(const GXmlElement& xml)
{
// Get parameter pointers
const GXmlElement* flux = gammalib::xml_get_par(G_READ, xml, m_flux.name());
const GXmlElement* index = gammalib::xml_get_par(G_READ, xml, m_index.name());
const GXmlElement* emin = gammalib::xml_get_par(G_READ, xml, m_emin.name());
const GXmlElement* emax = gammalib::xml_get_par(G_READ, xml, m_emax.name());
// Read parameters
m_flux.read(*flux);
m_index.read(*index);
m_emin.read(*emin);
m_emax.read(*emax);
// Return
return;
}
/***********************************************************************//**
* @brief Write model into XML element
*
* @param[in] xml XML element.
*
* @exception GException::model_invalid_spectral
* Existing XML element is not of type "PowerLaw"
*
* Writes the spectral information into an XML element.
***************************************************************************/
void GModelSpectralPlawPhotonFlux::write(GXmlElement& xml) const
{
// Set model type
if (xml.attribute("type") == "") {
xml.attribute("type", type());
}
// Verify model type
if (xml.attribute("type") != type()) {
throw GException::model_invalid_spectral(G_WRITE, xml.attribute("type"),
"Spectral model is not of type \""+type()+"\".");
}
// Get XML parameters
GXmlElement* flux = gammalib::xml_need_par(G_WRITE, xml, m_flux.name());
GXmlElement* index = gammalib::xml_need_par(G_WRITE, xml, m_index.name());
GXmlElement* emin = gammalib::xml_need_par(G_WRITE, xml, m_emin.name());
GXmlElement* emax = gammalib::xml_need_par(G_WRITE, xml, m_emax.name());
// Write parameters
m_flux.write(*flux);
m_index.write(*index);
m_emin.write(*emin);
m_emax.write(*emax);
// Return
return;
}
/***********************************************************************//**
* @brief Print power law information
*
* @param[in] chatter Chattiness.
* @return String containing power law information.
***************************************************************************/
std::string GModelSpectralPlawPhotonFlux::print(const GChatter& chatter) const
{
// Initialise result string
std::string result;
// Continue only if chatter is not silent
if (chatter != SILENT) {
// Append header
result.append("=== GModelSpectralPlawPhotonFlux ===");
// Append information
result.append("\n"+gammalib::parformat("Number of parameters"));
result.append(gammalib::str(size()));
for (int i = 0; i < size(); ++i) {
result.append("\n"+m_pars[i]->print(chatter));
}
} // endif: chatter was not silent
// Return result
return result;
}
/*==========================================================================
= =
= Private methods =
= =
==========================================================================*/
/***********************************************************************//**
* @brief Initialise class members
***************************************************************************/
void GModelSpectralPlawPhotonFlux::init_members(void)
{
// Initialise model type
m_type = "PowerLaw";
// Initialise photon flux
m_flux.clear();
m_flux.name("PhotonFlux");
m_flux.unit("ph/cm2/s");
m_flux.scale(1.0);
m_flux.value(1.0); // default: 1.0
m_flux.range(0.0, 10.0); // range: [0,10]
m_flux.free();
m_flux.gradient(0.0);
m_flux.has_grad(true);
// Initialise powerlaw index
m_index.clear();
m_index.name("Index");
m_index.scale(1.0);
m_index.value(-2.0); // default: -2.0
m_index.range(-10.0,+10.0); // range: [-10,+10]
m_index.free();
m_index.gradient(0.0);
m_index.has_grad(true);
// Initialise lower limit
m_emin.clear();
m_emin.name("LowerLimit");
m_emin.unit("MeV");
m_emin.scale(1.0);
m_emin.value(100.0); // default: 100
m_emin.range(0.001, 1.0e15); // range: [0.001, 1e15]
m_emin.fix();
m_emin.gradient(0.0);
m_emin.has_grad(false);
// Initialise upper limit
m_emax.clear();
m_emax.name("UpperLimit");
m_emax.unit("MeV");
m_emax.scale(1.0);
m_emax.value(500000.0); // default: 500000
m_emin.range(0.001, 1.0e15); // range: [0.001, 1e15]
m_emax.fix();
m_emax.gradient(0.0);
m_emax.has_grad(false);
// Set parameter pointer(s)
m_pars.clear();
m_pars.push_back(&m_flux);
m_pars.push_back(&m_index);
m_pars.push_back(&m_emin);
m_pars.push_back(&m_emax);
// Initialise last parameters (for fast computation)
m_log_emin = 0.0;
m_log_emax = 0.0;
m_pow_emin = 0.0;
m_pow_emax = 0.0;
m_norm = 0.0;
m_power = 0.0;
m_last_index = 1000.0;
m_last_emin.MeV(0.0);
m_last_emax.MeV(0.0);
m_last_energy.MeV(0.0);
// Return
return;
}
/***********************************************************************//**
* @brief Copy class members
*
* @param[in] model Spectral power law model.
***************************************************************************/
void GModelSpectralPlawPhotonFlux::copy_members(const GModelSpectralPlawPhotonFlux& model)
{
// Copy members
m_type = model.m_type;
m_flux = model.m_flux;
m_index = model.m_index;
m_emin = model.m_emin;
m_emax = model.m_emax;
// Set parameter pointer(s)
m_pars.clear();
m_pars.push_back(&m_flux);
m_pars.push_back(&m_index);
m_pars.push_back(&m_emin);
m_pars.push_back(&m_emax);
// Copy bookkeeping information
m_log_emin = model.m_log_emin;
m_log_emax = model.m_log_emax;
m_pow_emin = model.m_pow_emin;
m_pow_emax = model.m_pow_emax;
m_norm = model.m_norm;
m_power = model.m_power;
m_last_index = model.m_last_index;
m_last_emin = model.m_last_emin;
m_last_emax = model.m_last_emax;
m_last_energy = model.m_last_energy;
// Return
return;
}
/***********************************************************************//**
* @brief Delete class members
***************************************************************************/
void GModelSpectralPlawPhotonFlux::free_members(void)
{
// Return
return;
}
/***********************************************************************//**
* @brief Update precomputed values
*
* @param[in] srcEng Source energy
***************************************************************************/
void GModelSpectralPlawPhotonFlux::update(const GEnergy& srcEng) const
{
// Compute index+1
double gamma = index() + 1.0;
// Change in spectral index?
if (index() != m_last_index) {
// Save actual spectral index
m_last_index = index();
// Change in energy boundaries?
if (emin() != m_last_emin || emax() != m_last_emax) {
m_log_emin = std::log(emin().MeV());
m_last_emin = emin();
m_log_emax = std::log(emax().MeV());
m_last_emax = emax();
}
// Compute normalization factors
if (gamma != 0.0) {
m_pow_emin = std::pow(emin().MeV(), gamma);
m_pow_emax = std::pow(emax().MeV(), gamma);
double d = m_pow_emax - m_pow_emin;
m_norm = gamma / d;
m_g_norm = 1.0/gamma -
(m_pow_emax*m_log_emax - m_pow_emin*m_log_emin)/d;
}
else {
m_norm = 1.0 / (m_log_emax - m_log_emin);
m_g_norm = 0.0;
}
// Update power law factor
m_power = std::pow(srcEng.MeV(), index());
m_last_energy = srcEng;
} // endif: change in spectral index
// ... no change in spectral index
else {
// Change in energy boundaries?
if (emin() != m_last_emin || emax() != m_last_emax) {
// Update energy boundaries
m_log_emin = std::log(emin().MeV());
m_last_emin = emin();
m_log_emax = std::log(emax().MeV());
m_last_emax = emax();
// Compute power law normalization
if (gamma != 0.0) {
m_pow_emin = std::pow(emin().MeV(), gamma);
m_pow_emax = std::pow(emax().MeV(), gamma);
double d = m_pow_emax - m_pow_emin;
m_norm = gamma / d;
m_g_norm = 1.0/gamma -
(m_pow_emax*m_log_emax - m_pow_emin*m_log_emin)/d;
}
else {
m_norm = 1.0 / (m_log_emax - m_log_emin);
m_g_norm = 0.0;
}
} // endif: change in energy boundaries
// Change in energy?
if (srcEng != m_last_energy) {
m_power = std::pow(srcEng.MeV(), index());
m_last_energy = srcEng;
}
} // endelse: no change in spectral index
// Return
return;
}